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Date:      Tue, 16 Apr 2019 21:04:03 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - 120armv7-quarterly][math/py-gau2grid] Failed for py36-gau2grid-1.3.1 in build
Message-ID:  <201904162104.x3GL430S086607@beefy13.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: yuri@FreeBSD.org
Ident:          $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $
Log URL:        http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/499069/logs/py36-gau2grid-1.3.1.log
Build URL:      http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=499069
Log:

=>> Building math/py-gau2grid
build started at Tue Apr 16 21:03:19 UTC 2019
port directory: /usr/ports/math/py-gau2grid
package name: py36-gau2grid-1.3.1
building for: FreeBSD 120armv7-quarterly-job-06 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $
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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py36-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[120armv7-quarterly-job-06] Installing pkg-1.10.5_5...
[120armv7-quarterly-job-06] Extracting pkg-1.10.5_5: .......... done
===>   py36-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py36-gau2grid-1.3.1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-gau2grid-1.3.1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py36-gau2grid-1.3.1 for building
=> SHA256 Checksum OK for dgasmith-gau2grid-v1.3.1_GH0.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
<snip>

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
===>   py36-gau2grid-1.3.1 depends on executable: cmake - found
===>   Returning to build of py36-gau2grid-1.3.1
===>   py36-gau2grid-1.3.1 depends on file: /usr/local/bin/cmake - found
===>   py36-gau2grid-1.3.1 depends on executable: ninja - not found
===>   Installing existing package /packages/All/ninja-1.8.2_1,2.txz
[120armv7-quarterly-job-06] Installing ninja-1.8.2_1,2...
[120armv7-quarterly-job-06] `-- Installing python27-2.7.16...
[120armv7-quarterly-job-06] `-- Extracting python27-2.7.16: .......... done
[120armv7-quarterly-job-06] Extracting ninja-1.8.2_1,2: ......... done
Message from python27-2.7.16:

===========================================================================

Note that some standard Python modules are provided as separate ports
as they require additional dependencies. They are available as:

bsddb           databases/py-bsddb
gdbm            databases/py-gdbm
sqlite3         databases/py-sqlite3
tkinter         x11-toolkits/py-tkinter

===========================================================================
===>   py36-gau2grid-1.3.1 depends on executable: ninja - found
===>   Returning to build of py36-gau2grid-1.3.1
===>   py36-gau2grid-1.3.1 depends on file: /usr/local/bin/python3.6 - found
===========================================================================
=======================<phase: lib-depends    >============================
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py36-gau2grid-1.3.1
===>  Performing out-of-source build
/bin/mkdir -p /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build
-- The C compiler identification is Clang 6.0.1
-- Check for working C compiler: /nxb-bin/usr/bin/cc
-- Check for working C compiler: /nxb-bin/usr/bin/cc -- works
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Detecting C compile features
-- Detecting C compile features - done
-- Setting (unspecified) option MAX_AM: 8
-- Setting (unspecified) option SPHERICAL_ORDER: gaussian
-- Setting (unspecified) option CARTESIAN_ORDER: row
-- Setting option MAX_AM: 8
-- Setting option CMAKE_BUILD_TYPE: Release
-- Setting (unspecified) option ENABLE_XHOST: ON
-- Performing Test CMAKE_C_FLAGS [-xHost] - Failed
-- Performing Test CMAKE_C_FLAGS [-march=native] - Failed
CMake Warning at cmake/psi4OptionsTools.cmake:94 (message):
  Option unfulfilled as none of -xHost;-march=native valid
Call Stack (most recent call first):
  cmake/psi4OptionsTools.cmake:137 (add_C_or_CXX_flags)
  cmake/psi4OptionsTools.cmake:168 (add_C_flags)
  cmake/psi4OptionsTools.cmake:186 (add_flags)
  CMakeLists.txt:22 (option_with_flags)


-- Setting (unspecified) option BUILD_FPIC: ON
-- Setting (unspecified) option BUILD_SHARED_LIBS: ON
-- Setting (unspecified) option ENABLE_GENERIC: OFF
-- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib
-- Setting option PYMOD_INSTALL_LIBDIR: /usr/local/lib/python3.6/site-packages
-- Setting option INSTALL_PYMOD: ON
-- Setting (unspecified) option NATIVE_PYTHON_INSTALL: OFF
-- gau2grid install: /usr/local
-- Found PythonInterp: /usr/local/bin/python3.6 (found suitable version "3.6.8", minimum required is "3.6") 
-- Found PythonLibs: /usr/local/lib/libpython3.6m.so
-- Found Python 3.6: /usr/local/bin/python3.6 (found version 3.6.8)
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
  File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module>
    from . import overrides
  File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module>
    from numpy.core._multiarray_umath import (
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import core
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module>
    raise ImportError(msg)
ImportError: 

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
Here is how to proceed:
- If you're working with a numpy git repository, try `git clean -xdf`
  (removes all files not under version control) and rebuild numpy.
- If you are simply trying to use the numpy version that you have installed:
  your installation is broken - please reinstall numpy.
- If you have already reinstalled and that did not fix the problem, then:
  1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6),
     and that you have no directories in your PATH or PYTHONPATH that can
     interfere with the Python and numpy versions you're trying to use.
  2. If (1) looks fine, you can open a new issue at
     https://github.com/numpy/numpy/issues.  Please include details on:
     - how you installed Python
     - how you installed numpy
     - your operating system
     - whether or not you have multiple versions of Python installed
     - if you built from source, your compiler versions and ideally a build log

     Note: this error has many possible causes, so please don't comment on
     an existing issue about this - open a new one instead.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

-- Configuring done
-- Generating done
CMake Warning:
  Manually-specified variables were not used by the project:

    BOOST_PYTHON_SUFFIX
    CMAKE_COLOR_MAKEFILE
    CMAKE_CXX_COMPILER
    CMAKE_CXX_FLAGS
    CMAKE_CXX_FLAGS_DEBUG
    CMAKE_CXX_FLAGS_RELEASE
    CMAKE_C_FLAGS_DEBUG
    CMAKE_EXE_LINKER_FLAGS
    CMAKE_MODULE_LINKER_FLAGS
    CMAKE_VERBOSE_MAKEFILE
    THREADS_HAVE_PTHREAD_ARG


-- Build files have been written to: /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build
===========================================================================
=======================<phase: build          >============================
===>  Building for py36-gau2grid-1.3.1
[1/9] cd /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build && /usr/local/bin/python3.6 -c "import sys;                                      sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1');                                      import gau2grid as gg;                                      gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build', cartesian_order='row', spherical_order='gaussian')"
FAILED: gau2grid.h gau2grid_orbital.c gau2grid_phi.c gau2grid_deriv1.c gau2grid_deriv2.c gau2grid_spherical.c gau2grid_helper.c 
cd /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build && /usr/local/bin/python3.6 -c "import sys;                                      sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1');                                      import gau2grid as gg;                                      gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build', cartesian_order='row', spherical_order='gaussian')"
Traceback (most recent call last):
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module>
    from . import multiarray
  File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module>
    from . import overrides
  File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module>
    from numpy.core._multiarray_umath import (
ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "<string>", line 1, in <module>
  File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1/gau2grid/__init__.py", line 5, in <module>
    from . import RSH
  File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1/gau2grid/RSH.py", line 10, in <module>
    import numpy as np
  File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module>
    from . import core
  File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module>
    raise ImportError(msg)
ImportError: 

IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE!

Importing the multiarray numpy extension module failed.  Most
likely you are trying to import a failed build of numpy.
Here is how to proceed:
- If you're working with a numpy git repository, try `git clean -xdf`
  (removes all files not under version control) and rebuild numpy.
- If you are simply trying to use the numpy version that you have installed:
  your installation is broken - please reinstall numpy.
- If you have already reinstalled and that did not fix the problem, then:
  1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6),
     and that you have no directories in your PATH or PYTHONPATH that can
     interfere with the Python and numpy versions you're trying to use.
  2. If (1) looks fine, you can open a new issue at
     https://github.com/numpy/numpy/issues.  Please include details on:
     - how you installed Python
     - how you installed numpy
     - your operating system
     - whether or not you have multiple versions of Python installed
     - if you built from source, your compiler versions and ideally a build log

     Note: this error has many possible causes, so please don't comment on
     an existing issue about this - open a new one instead.

Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5"

ninja: build stopped: subcommand failed.
*** Error code 1

Stop.
make: stopped in /usr/ports/math/py-gau2grid



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