From owner-freebsd-ports-bugs@FreeBSD.ORG Thu Nov 14 11:10:01 2013 Return-Path: Delivered-To: freebsd-ports-bugs@smarthost.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 60C7ABD9 for ; Thu, 14 Nov 2013 11:10:01 +0000 (UTC) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:1900:2254:206c::16:87]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 4395320C4 for ; Thu, 14 Nov 2013 11:10:01 +0000 (UTC) Received: from freefall.freebsd.org (localhost [127.0.0.1]) by freefall.freebsd.org (8.14.7/8.14.7) with ESMTP id rAEBA1xB085566 for ; Thu, 14 Nov 2013 11:10:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.7/8.14.7/Submit) id rAEBA1Ob085565; Thu, 14 Nov 2013 11:10:01 GMT (envelope-from gnats) Resent-Date: Thu, 14 Nov 2013 11:10:01 GMT Resent-Message-Id: <201311141110.rAEBA1Ob085565@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Johannes Jost Meixner Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id AB638821 for ; Thu, 14 Nov 2013 11:02:51 +0000 (UTC) Received: from dd16522.kasserver.com (dd16522.kasserver.com [85.13.137.124]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 2794F2056 for ; Thu, 14 Nov 2013 11:02:51 +0000 (UTC) Received: from mx12.chaot.net (62.65.222.235.cable.starman.ee [62.65.222.235]) by dd16522.kasserver.com (Postfix) with ESMTPSA id 6EC7C456227; Thu, 14 Nov 2013 12:02:48 +0100 (CET) Received: from localhost (1003@localhost [local]); by mx12.chaot.net (OpenSMTPD) with ESMTPA id 8751d9c5; Thu, 14 Nov 2013 13:02:47 +0200 (EET) Message-Id: <594357577.enqueue@mx12.chaot.net> Date: Thu, 14 Nov 2013 13:02:46 +0200 (EET) From: Johannes Jost Meixner To: FreeBSD-gnats-submit@freebsd.org X-Send-Pr-Version: 3.113 Subject: ports/183951: [PATCH] math/py-pymc: update to 2.3,1 Cc: wenheping@gmail.com X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.16 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 14 Nov 2013 11:10:01 -0000 >Number: 183951 >Category: ports >Synopsis: [PATCH] math/py-pymc: update to 2.3,1 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Thu Nov 14 11:10:00 UTC 2013 >Closed-Date: >Last-Modified: >Originator: Johannes Jost Meixner >Release: FreeBSD 11.0-CURRENT amd64 >Organization: >Environment: System: FreeBSD mx12.chaot.net 11.0-CURRENT FreeBSD 11.0-CURRENT #3: Thu Nov 7 16:08:22 EET >Description: - Update to 2.3,1 - Add license - Add matplotlib dependency as per docs/INSTALL.rst - Add DOCS option - Add stage support Port maintainer (wenheping@gmail.com) is cc'd. Generated with FreeBSD Port Tools 0.99_8 (mode: update, diff: ports) >How-To-Repeat: >Fix: --- py27-pymc-2.3,1.patch begins here --- diff -ruN /usr/ports/math/py-pymc/Makefile ./Makefile --- /usr/ports/math/py-pymc/Makefile 2013-10-26 03:52:33.000000000 +0300 +++ ./Makefile 2013-11-14 12:58:21.017349595 +0200 @@ -1,9 +1,8 @@ # Created by: Wen Heping -# $FreeBSD: math/py-pymc/Makefile 331644 2013-10-26 00:52:33Z gerald $ +# $FreeBSD$ PORTNAME= pymc -PORTVERSION= 2.0 -PORTREVISION= 1 +PORTVERSION= 2.3 PORTEPOCH= 1 CATEGORIES= math python MASTER_SITES= CHEESESHOP @@ -12,11 +11,35 @@ MAINTAINER= wenheping@gmail.com COMMENT= Markov Chain Monte Carlo Sampling Toolkit -BUILD_DEPENDS= ${PYNUMPY} -RUN_DEPENDS:= ${BUILD_DEPENDS} +LICENSE= AFL +LICENSE_NAME= Academic Free License +LICENSE_FILE= ${WRKSRC}/LICENSE +LICENSE_PERMS= auto-accept dist-mirror dist-sell pkg-mirror pkg-sell + +BUILD_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib +LIB_DEPENDS= liblapack.so:${PORTSDIR}/math/lapack \ + libblas.so:${PORTSDIR}/math/blas +RUN_DEPENDS= ${PYNUMPY} \ + ${PYTHON_PKGNAMEPREFIX}matplotlib>0:${PORTSDIR}/math/py-matplotlib + +OPTIONS_DEFINE= DOCS +DOCSDIR= ${PREFIX}/share/doc/py-${PORTNAME} USE_PYTHON= yes USE_PYDISTUTILS= yes +PYTHON_P3K_PLIST_HACK= yes +PORTDOCS= * + +post-install: + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/flib.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/gp/cov_funs/distances.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/gp/cov_funs/isotropic_cov_funs.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/gp/incomplete_chol.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/gp/linalg_utils.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/Container_values.so + ${STRIP_CMD} ${STAGEDIR}${PYTHON_SITELIBDIR}/${PORTNAME}/LazyFunction.so + ${MKDIR} ${STAGEDIR}${DOCSDIR} + ${INSTALL_DATA} ${WRKSRC}/docs/*.rst ${STAGEDIR}${DOCSDIR} -NO_STAGE= yes .include diff -ruN /usr/ports/math/py-pymc/distinfo ./distinfo --- /usr/ports/math/py-pymc/distinfo 2012-07-14 16:54:48.000000000 +0300 +++ ./distinfo 2013-11-14 10:22:13.226930415 +0200 @@ -1,2 +1,2 @@ -SHA256 (pymc-2.0.tar.gz) = 15bbf1e0df9e080d367d639462c4b2b9290826ca069a76ac2bc79d795fe6e653 -SIZE (pymc-2.0.tar.gz) = 1200416 +SHA256 (pymc-2.3.tar.gz) = db029c59d6a04f0c97d88993151c4ee58c76b9ad5c71ead7ee250088ba4cce0d +SIZE (pymc-2.3.tar.gz) = 13080085 diff -ruN /usr/ports/math/py-pymc/pkg-descr ./pkg-descr --- /usr/ports/math/py-pymc/pkg-descr 2012-07-14 16:54:48.000000000 +0300 +++ ./pkg-descr 2013-11-14 10:43:55.937529554 +0200 @@ -1,11 +1,9 @@ -Bayesian estimation, particularly using Markov chain Monte -Carlo (MCMC), is an increasingly relevant approach to -statistical estimation. However, few statistical software -packages implement MCMC samplers, and they are non-trivial - to code by hand. pymc is a python package that implements -the Metropolis-Hastings algorithm as a python class, and is -extremely flexible and applicable to a large suite of problems. -pymc includes methods for summarizing output, plotting, -goodness-of-fit and convergence diagnostics. +Bayesian estimation, particularly using Markov chain Monte Carlo (MCMC), is an +increasingly relevant approach to statistical estimation. However, few +statistical software packages implement MCMC samplers, and they are non-trivial +to code by hand. pymc is a python package that implements the +Metropolis-Hastings algorithm as a python class, and is extremely flexible and +applicable to a large suite of problems. pymc includes methods for summarizing +output, plotting, goodness-of-fit and convergence diagnostics. -WWW: http://pypi.python.org/pypi/pymc/ +WWW: http://pypi.python.org/pypi/pymc/ diff -ruN /usr/ports/math/py-pymc/pkg-plist ./pkg-plist --- /usr/ports/math/py-pymc/pkg-plist 2012-07-14 16:54:48.000000000 +0300 +++ ./pkg-plist 2013-11-14 12:27:27.886763032 +0200 @@ -1,3 +1,7 @@ +%%PYTHON_SITELIBDIR%%/pymc-2.3-py2.7.egg-info +%%PYTHON_SITELIBDIR%%/pymc/CircularStochastic.py +%%PYTHON_SITELIBDIR%%/pymc/CircularStochastic.pyc +%%PYTHON_SITELIBDIR%%/pymc/CircularStochastic.pyo %%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.py %%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.pyc %%PYTHON_SITELIBDIR%%/pymc/CommonDeterministics.pyo @@ -24,6 +28,9 @@ %%PYTHON_SITELIBDIR%%/pymc/NormalApproximation.py %%PYTHON_SITELIBDIR%%/pymc/NormalApproximation.pyc %%PYTHON_SITELIBDIR%%/pymc/NormalApproximation.pyo +%%PYTHON_SITELIBDIR%%/pymc/NumpyDeterministics.py +%%PYTHON_SITELIBDIR%%/pymc/NumpyDeterministics.pyc +%%PYTHON_SITELIBDIR%%/pymc/NumpyDeterministics.pyo %%PYTHON_SITELIBDIR%%/pymc/PyMCObjects.py %%PYTHON_SITELIBDIR%%/pymc/PyMCObjects.pyc %%PYTHON_SITELIBDIR%%/pymc/PyMCObjects.pyo @@ -36,6 +43,9 @@ %%PYTHON_SITELIBDIR%%/pymc/__init__.py %%PYTHON_SITELIBDIR%%/pymc/__init__.pyc %%PYTHON_SITELIBDIR%%/pymc/__init__.pyo +%%PYTHON_SITELIBDIR%%/pymc/calc_utils.py +%%PYTHON_SITELIBDIR%%/pymc/calc_utils.pyc +%%PYTHON_SITELIBDIR%%/pymc/calc_utils.pyo %%PYTHON_SITELIBDIR%%/pymc/database/__init__.py %%PYTHON_SITELIBDIR%%/pymc/database/__init__.pyc %%PYTHON_SITELIBDIR%%/pymc/database/__init__.pyo @@ -45,9 +55,9 @@ %%PYTHON_SITELIBDIR%%/pymc/database/hdf5.py %%PYTHON_SITELIBDIR%%/pymc/database/hdf5.pyc %%PYTHON_SITELIBDIR%%/pymc/database/hdf5.pyo -%%PYTHON_SITELIBDIR%%/pymc/database/mysql.py -%%PYTHON_SITELIBDIR%%/pymc/database/mysql.pyc -%%PYTHON_SITELIBDIR%%/pymc/database/mysql.pyo +%%PYTHON_SITELIBDIR%%/pymc/database/hdf5ea.py +%%PYTHON_SITELIBDIR%%/pymc/database/hdf5ea.pyc +%%PYTHON_SITELIBDIR%%/pymc/database/hdf5ea.pyo %%PYTHON_SITELIBDIR%%/pymc/database/no_trace.py %%PYTHON_SITELIBDIR%%/pymc/database/no_trace.pyc %%PYTHON_SITELIBDIR%%/pymc/database/no_trace.pyo @@ -63,6 +73,9 @@ %%PYTHON_SITELIBDIR%%/pymc/database/txt.py %%PYTHON_SITELIBDIR%%/pymc/database/txt.pyc %%PYTHON_SITELIBDIR%%/pymc/database/txt.pyo +%%PYTHON_SITELIBDIR%%/pymc/datatypes.py +%%PYTHON_SITELIBDIR%%/pymc/datatypes.pyc +%%PYTHON_SITELIBDIR%%/pymc/datatypes.pyo %%PYTHON_SITELIBDIR%%/pymc/decorators.py %%PYTHON_SITELIBDIR%%/pymc/decorators.pyc %%PYTHON_SITELIBDIR%%/pymc/decorators.pyo @@ -72,39 +85,72 @@ %%PYTHON_SITELIBDIR%%/pymc/distributions.py %%PYTHON_SITELIBDIR%%/pymc/distributions.pyc %%PYTHON_SITELIBDIR%%/pymc/distributions.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/DisasterModel.py -%%PYTHON_SITELIBDIR%%/pymc/examples/DisasterModel.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/DisasterModel.pyo %%PYTHON_SITELIBDIR%%/pymc/examples/__init__.py %%PYTHON_SITELIBDIR%%/pymc/examples/__init__.pyc %%PYTHON_SITELIBDIR%%/pymc/examples/__init__.pyo %%PYTHON_SITELIBDIR%%/pymc/examples/custom_step.py %%PYTHON_SITELIBDIR%%/pymc/examples/custom_step.pyc %%PYTHON_SITELIBDIR%%/pymc/examples/custom_step.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model.py +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_gof.py +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_gof.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_gof.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_linear.py +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_linear.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_linear.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_missing.py +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_missing.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_missing.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_null.py +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_null.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/disaster_model_null.pyo %%PYTHON_SITELIBDIR%%/pymc/examples/gelman_bioassay.py %%PYTHON_SITELIBDIR%%/pymc/examples/gelman_bioassay.pyc %%PYTHON_SITELIBDIR%%/pymc/examples/gelman_bioassay.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1.py -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.py -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_gof.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_missing.py -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_missing.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/model_1_missing.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/model_2.py -%%PYTHON_SITELIBDIR%%/pymc/examples/model_2.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/model_2.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.py -%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/model_3.pyo -%%PYTHON_SITELIBDIR%%/pymc/examples/straightlinefit.py -%%PYTHON_SITELIBDIR%%/pymc/examples/straightlinefit.pyc -%%PYTHON_SITELIBDIR%%/pymc/examples/straightlinefit.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/MCMC.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/MCMC.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/MCMC.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/PyMCmodel.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/PyMCmodel.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/PyMCmodel.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/__init__.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/__init__.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/__init__.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/basiscov.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/basiscov.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/basiscov.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/cov.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/cov.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/cov.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/covparams.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/covparams.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/covparams.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mean.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mean.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mean.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mesh_choice.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mesh_choice.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/mesh_choice.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/observation.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/observation.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/observation.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/realizations.py +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/realizations.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/gp/realizations.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma.py +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma_data.py +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma_data.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/melanoma_data.pyo %%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.py %%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.pyc %%PYTHON_SITELIBDIR%%/pymc/examples/weibull_fit.pyo +%%PYTHON_SITELIBDIR%%/pymc/examples/zip.py +%%PYTHON_SITELIBDIR%%/pymc/examples/zip.pyc +%%PYTHON_SITELIBDIR%%/pymc/examples/zip.pyo %%PYTHON_SITELIBDIR%%/pymc/flib.so %%PYTHON_SITELIBDIR%%/pymc/gp/BasisCovariance.py %%PYTHON_SITELIBDIR%%/pymc/gp/BasisCovariance.pyc @@ -124,9 +170,6 @@ %%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.py %%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.pyc %%PYTHON_SITELIBDIR%%/pymc/gp/NearlyFullRankCovariance.pyo -%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.py -%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.pyc -%%PYTHON_SITELIBDIR%%/pymc/gp/PyMC_objects.pyo %%PYTHON_SITELIBDIR%%/pymc/gp/Realization.py %%PYTHON_SITELIBDIR%%/pymc/gp/Realization.pyc %%PYTHON_SITELIBDIR%%/pymc/gp/Realization.pyo @@ -147,38 +190,44 @@ %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/cov_utils.pyo %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/distances.so %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/isotropic_cov_funs.so +%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/nsmatern.py +%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/nsmatern.pyc +%%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/nsmatern.pyo %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.py %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.pyc %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs/wrapped_distances.pyo +%%PYTHON_SITELIBDIR%%/pymc/gp/gp_submodel.py +%%PYTHON_SITELIBDIR%%/pymc/gp/gp_submodel.pyc +%%PYTHON_SITELIBDIR%%/pymc/gp/gp_submodel.pyo %%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.py %%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.pyc %%PYTHON_SITELIBDIR%%/pymc/gp/gpplots.pyo %%PYTHON_SITELIBDIR%%/pymc/gp/incomplete_chol.so %%PYTHON_SITELIBDIR%%/pymc/gp/linalg_utils.so +%%PYTHON_SITELIBDIR%%/pymc/gp/step_methods.py +%%PYTHON_SITELIBDIR%%/pymc/gp/step_methods.pyc +%%PYTHON_SITELIBDIR%%/pymc/gp/step_methods.pyo %%PYTHON_SITELIBDIR%%/pymc/graph.py %%PYTHON_SITELIBDIR%%/pymc/graph.pyc %%PYTHON_SITELIBDIR%%/pymc/graph.pyo +%%PYTHON_SITELIBDIR%%/pymc/progressbar.py +%%PYTHON_SITELIBDIR%%/pymc/progressbar.pyc +%%PYTHON_SITELIBDIR%%/pymc/progressbar.pyo +%%PYTHON_SITELIBDIR%%/pymc/six.py +%%PYTHON_SITELIBDIR%%/pymc/six.pyc +%%PYTHON_SITELIBDIR%%/pymc/six.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/__init__.py %%PYTHON_SITELIBDIR%%/pymc/tests/__init__.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/__init__.pyo -%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.py -%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.pyc -%%PYTHON_SITELIBDIR%%/pymc/tests/check_dependencies.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.py %%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/objectmodel.pyo -%%PYTHON_SITELIBDIR%%/pymc/tests/screen.py -%%PYTHON_SITELIBDIR%%/pymc/tests/screen.pyc -%%PYTHON_SITELIBDIR%%/pymc/tests/screen.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/test_AM.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_AM.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_AM.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_GP_MCMC.pyo -%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.py -%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.pyc -%%PYTHON_SITELIBDIR%%/pymc/tests/test_LazyFunction.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_MCMCSampler.pyo @@ -206,6 +255,9 @@ %%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_distributions.pyo +%%PYTHON_SITELIBDIR%%/pymc/tests/test_gradients.py +%%PYTHON_SITELIBDIR%%/pymc/tests/test_gradients.pyc +%%PYTHON_SITELIBDIR%%/pymc/tests/test_gradients.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_graph.pyo @@ -218,6 +270,9 @@ %%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_mean.pyo +%%PYTHON_SITELIBDIR%%/pymc/tests/test_missing.py +%%PYTHON_SITELIBDIR%%/pymc/tests/test_missing.pyc +%%PYTHON_SITELIBDIR%%/pymc/tests/test_missing.pyo %%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_norm_approx.pyo @@ -227,12 +282,36 @@ %%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.py %%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.pyc %%PYTHON_SITELIBDIR%%/pymc/tests/test_realization.pyo +%%PYTHON_SITELIBDIR%%/pymc/tests/test_special_methods.py +%%PYTHON_SITELIBDIR%%/pymc/tests/test_special_methods.pyc +%%PYTHON_SITELIBDIR%%/pymc/tests/test_special_methods.pyo +%%PYTHON_SITELIBDIR%%/pymc/tests/test_utils.py +%%PYTHON_SITELIBDIR%%/pymc/tests/test_utils.pyc +%%PYTHON_SITELIBDIR%%/pymc/tests/test_utils.pyo +%%PYTHON_SITELIBDIR%%/pymc/threadpool.py +%%PYTHON_SITELIBDIR%%/pymc/threadpool.pyc +%%PYTHON_SITELIBDIR%%/pymc/threadpool.pyo %%PYTHON_SITELIBDIR%%/pymc/utils.py %%PYTHON_SITELIBDIR%%/pymc/utils.pyc %%PYTHON_SITELIBDIR%%/pymc/utils.pyo -@dirrm %%PYTHON_SITELIBDIR%%/pymc/tests -@dirrm %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs -@dirrm %%PYTHON_SITELIBDIR%%/pymc/gp -@dirrm %%PYTHON_SITELIBDIR%%/pymc/examples -@dirrm %%PYTHON_SITELIBDIR%%/pymc/database -@dirrm %%PYTHON_SITELIBDIR%%/pymc +%%PORTDOCS%%%%DOCSDIR%%/INSTALL.rst +%%PORTDOCS%%%%DOCSDIR%%/README.rst +%%PORTDOCS%%%%DOCSDIR%%/conclusion.rst +%%PORTDOCS%%%%DOCSDIR%%/database.rst +%%PORTDOCS%%%%DOCSDIR%%/distributions.rst +%%PORTDOCS%%%%DOCSDIR%%/extending.rst +%%PORTDOCS%%%%DOCSDIR%%/index.rst +%%PORTDOCS%%%%DOCSDIR%%/modelbuilding.rst +%%PORTDOCS%%%%DOCSDIR%%/modelchecking.rst +%%PORTDOCS%%%%DOCSDIR%%/modelfitting.rst +%%PORTDOCS%%%%DOCSDIR%%/references.rst +%%PORTDOCS%%%%DOCSDIR%%/theory.rst +%%PORTDOCS%%%%DOCSDIR%%/tutorial.rst +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/tests +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/gp/cov_funs +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/gp +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/examples/gp +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/examples +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc/database +@dirrmtry %%PYTHON_SITELIBDIR%%/pymc +%%PORTDOCS%%@dirrmtry %%DOCSDIR%% --- py27-pymc-2.3,1.patch ends here --- >Release-Note: >Audit-Trail: >Unformatted: