From owner-svn-ports-head@freebsd.org Sat Sep 21 02:51:27 2019 Return-Path: Delivered-To: svn-ports-head@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 94ABFF329F; Sat, 21 Sep 2019 02:51:27 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 46Zw8H3VQTz40NG; Sat, 21 Sep 2019 02:51:27 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 5950578EE; Sat, 21 Sep 2019 02:51:27 +0000 (UTC) (envelope-from jwb@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id x8L2pRiG001605; Sat, 21 Sep 2019 02:51:27 GMT (envelope-from jwb@FreeBSD.org) Received: (from jwb@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id x8L2pRfs001603; Sat, 21 Sep 2019 02:51:27 GMT (envelope-from jwb@FreeBSD.org) Message-Id: <201909210251.x8L2pRfs001603@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jwb set sender to jwb@FreeBSD.org using -f From: "Jason W. Bacon" Date: Sat, 21 Sep 2019 02:51:26 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r512462 - head/biology/p5-TrimGalore X-SVN-Group: ports-head X-SVN-Commit-Author: jwb X-SVN-Commit-Paths: head/biology/p5-TrimGalore X-SVN-Commit-Revision: 512462 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 21 Sep 2019 02:51:27 -0000 Author: jwb Date: Sat Sep 21 02:51:26 2019 New Revision: 512462 URL: https://svnweb.freebsd.org/changeset/ports/512462 Log: biology/p5-TrimGalore: Upgrade to 0.6.4 Improved adapter autodetection, minor bug fixes. Modified: head/biology/p5-TrimGalore/Makefile head/biology/p5-TrimGalore/distinfo Modified: head/biology/p5-TrimGalore/Makefile ============================================================================== --- head/biology/p5-TrimGalore/Makefile Sat Sep 21 02:44:54 2019 (r512461) +++ head/biology/p5-TrimGalore/Makefile Sat Sep 21 02:51:26 2019 (r512462) @@ -1,7 +1,7 @@ # $FreeBSD$ PORTNAME= TrimGalore -DISTVERSION= 0.6.1 +DISTVERSION= 0.6.4 CATEGORIES= biology perl5 python PKGNAMEPREFIX= p5- @@ -11,7 +11,7 @@ COMMENT= Wrapper around Cutadapt and FastQC for adapte LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>0:biology/py-cutadapt@${PY_FLAVOR} \ +RUN_DEPENDS= ${PYTHON_PKGNAMEPREFIX}cutadapt>=2.5:biology/py-cutadapt@${PY_FLAVOR} \ fastqc>0:biology/fastqc # Future: Can 3.4+ be determined from cutadapt dep? Modified: head/biology/p5-TrimGalore/distinfo ============================================================================== --- head/biology/p5-TrimGalore/distinfo Sat Sep 21 02:44:54 2019 (r512461) +++ head/biology/p5-TrimGalore/distinfo Sat Sep 21 02:51:26 2019 (r512462) @@ -1,3 +1,3 @@ -TIMESTAMP = 1553345061 -SHA256 (FelixKrueger-TrimGalore-0.6.1_GH0.tar.gz) = 658578c29d007fe66f9ab49608442be703a6fcf535db06eb82659c7edccb62b0 -SIZE (FelixKrueger-TrimGalore-0.6.1_GH0.tar.gz) = 26825390 +TIMESTAMP = 1568381106 +SHA256 (FelixKrueger-TrimGalore-0.6.4_GH0.tar.gz) = eb57e18203d8a1dce1397b930a348a9969eebaa758b8a7304d04c22f216cea2d +SIZE (FelixKrueger-TrimGalore-0.6.4_GH0.tar.gz) = 26827580