Date: Fri, 30 Jun 2006 16:39:06 +0100 (BST) From: S Roberts <stacey@vickiandstacey.com> To: FreeBSD-gnats-submit@FreeBSD.org Cc: sem@FreeBSD.org Subject: ports/99647: portupgrade -R portupgrade-2.1.1,2 breaks pkgdb Message-ID: <200606301539.k5UFd6AI013838@localhost.vickiandstacey.com> Resent-Message-ID: <200606301540.k5UFeJDE069014@freefall.freebsd.org>
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>Number: 99647 >Category: ports >Synopsis: portupgrade -R portupgrade-2.1.1,2 breaks pkgdb >Confidential: no >Severity: serious >Priority: high >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: sw-bug >Submitter-Id: current-users >Arrival-Date: Fri Jun 30 15:40:19 GMT 2006 >Closed-Date: >Last-Modified: >Originator: S Roberts >Release: FreeBSD 6.1-STABLE i386 >Organization: >Environment: System: FreeBSD chimera.vickiandstacey.com 6.1-STABLE FreeBSD 6.1-STABLE #0: Sun May 28 11:47:03 BST 2006 sroberts@chimera.vickiandstacey.com:/usr/obj/usr/src/sys/STEEL i386 >Description: After fresh cvsup of ports tree today, attempts to portupgrade portupgrade to latest in ports results in broken pkgdb. Here is the output from the portupgrade process: # portupgrade -R portupgrade-2.1.1,2 ---> Upgrading 'portupgrade-2.1.1,2' to 'portupgrade-2.1.3.1,2' (sysutils/portupgrade) ---> Building '/usr/ports/sysutils/portupgrade' ===> Cleaning for ruby-1.8.4_8,1 ===> Cleaning for ruby18-bdb-0.5.9 ===> Cleaning for perl-5.8.8 ===> Cleaning for db41-4.1.25_3 ===> Cleaning for portupgrade-2.1.3.1,2 ===> Vulnerability check disabled, database not found ===> Found saved configuration for portupgrade-2.0.1_2,1 => pkgtools-2.1.3.1.tar.bz2 doesn't seem to exist in /usr/ports/distfiles/. => Attempting to fetch from ftp://ftp.FreeBSD.org/pub/FreeBSD/ports/local-distfiles/sem/. pkgtools-2.1.3.1.tar.bz2 100% of 107 kB 88 kBps ===> Extracting for portupgrade-2.1.3.1,2 => MD5 Checksum OK for pkgtools-2.1.3.1.tar.bz2. => SHA256 Checksum OK for pkgtools-2.1.3.1.tar.bz2. ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/bin/ruby18 - found ===> Patching for portupgrade-2.1.3.1,2 ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/bin/ruby18 - found ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/bin/ruby18 - found ===> Configuring for portupgrade-2.1.3.1,2 ===> Building for portupgrade-2.1.3.1,2 ===> bin (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/bin /usr/local/bin/ruby18 -wc pkg_fetch Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' pkg_fetch > .build/pkg_fetch /usr/local/bin/ruby18 -wc pkg_glob Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' pkg_glob > .build/pkg_glob /usr/local/bin/ruby18 -wc pkg_sort Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' pkg_sort > .build/pkg_sort /usr/local/bin/ruby18 -wc pkgdb Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' pkgdb > .build/pkgdb /usr/local/bin/ruby18 -wc portcvsweb Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' portcvsweb > .build/portcvsweb /usr/local/bin/ruby18 -wc portsclean Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' portsclean > .build/portsclean /usr/local/bin/ruby18 -wc portsdb Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' portsdb > .build/portsdb /usr/local/bin/ruby18 -wc portupgrade Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' portupgrade > .build/portupgrade /usr/local/bin/ruby18 -wc portversion Syntax OK /usr/local/bin/ruby18 -pe ' if $. == 1; if /^#!/; sub /^#!\s*\S*(\benv\s+)?\bruby/, "#!/usr/local/bin/ruby18"; else; $_ = "#!/usr/local/bin/ruby18\n" + $_; end; end' portversion > .build/portversion gzip -cn pkg_deinstall.1 > pkg_deinstall.1.gz gzip -cn pkg_fetch.1 > pkg_fetch.1.gz gzip -cn pkg_glob.1 > pkg_glob.1.gz gzip -cn pkg_sort.1 > pkg_sort.1.gz gzip -cn pkgdb.1 > pkgdb.1.gz gzip -cn portcvsweb.1 > portcvsweb.1.gz gzip -cn portsclean.1 > portsclean.1.gz gzip -cn portsdb.1 > portsdb.1.gz gzip -cn portupgrade.1 > portupgrade.1.gz gzip -cn portversion.1 > portversion.1.gz ===> etc (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/etc /usr/local/bin/ruby18 -p -e 'sub(%r:/usr/local:, "/usr/local")' -e 'sub(%r:(/etc/rc\.subr):, "/usr/local\\1") if !File.exist?("/etc/rc.subr")' status-pkg.sh > .build/status-pkg.sh gzip -cn pkgtools.conf.5 > pkgtools.conf.5.gz ===> lib (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/lib /usr/local/bin/ruby18 -wc pkg.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkg.rb > .build/pkg.rb /usr/local/bin/ruby18 -wc pkgdb.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkgdb.rb > .build/pkgdb.rb /usr/local/bin/ruby18 -wc pkginfo.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkginfo.rb > .build/pkginfo.rb /usr/local/bin/ruby18 -wc pkgmisc.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkgmisc.rb > .build/pkgmisc.rb /usr/local/bin/ruby18 -wc pkgtools.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkgtools.rb > .build/pkgtools.rb /usr/local/bin/ruby18 -wc pkgtsort.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkgtsort.rb > .build/pkgtsort.rb /usr/local/bin/ruby18 -wc pkgversion.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' pkgversion.rb > .build/pkgversion.rb /usr/local/bin/ruby18 -wc portinfo.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' portinfo.rb > .build/portinfo.rb /usr/local/bin/ruby18 -wc ports.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' ports.rb > .build/ports.rb /usr/local/bin/ruby18 -wc portsdb.rb Syntax OK /usr/local/bin/ruby18 -p -e 'sub %r:/usr/local:, "/usr/local"' portsdb.rb > .build/portsdb.rb ===> misc (all) ===> misc/bash (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/misc/bash ===> misc/tcsh (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/misc/tcsh ===> misc/zsh (all) Warning: Object directory not changed from original /usr/ports/sysutils/portupgrade/work/pkgtools-2.1.3.1/misc/zsh ---> Backing up the old version ---> Uninstalling the old version ---> Deinstalling 'portupgrade-2.1.1,2' [Updating the pkgdb <format:bdb1_btree> in /var/db/pkg ... - 366 packages found (-1 +0) (...) done] ---> Installing the new version via the port ===> Installing for portupgrade-2.1.3.1,2 ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/bin/ruby18 - found ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/lib/ruby/site_ruby/1.8/i386-freebsd6/bdb.so - found ===> portupgrade-2.1.3.1,2 depends on file: /usr/local/bin/perl5.8.8 - found ===> Generating temporary packing list ===> Checking if sysutils/portupgrade already installed ===> bin (install) install -o root -g wheel -m 555 .build/pkg_fetch /usr/local/sbin/pkg_fetch install -o root -g wheel -m 555 .build/pkg_glob /usr/local/sbin/pkg_glob install -o root -g wheel -m 555 .build/pkg_sort /usr/local/sbin/pkg_sort install -o root -g wheel -m 555 .build/pkgdb /usr/local/sbin/pkgdb install -o root -g wheel -m 555 .build/portcvsweb /usr/local/sbin/portcvsweb install -o root -g wheel -m 555 .build/portsclean /usr/local/sbin/portsclean install -o root -g wheel -m 555 .build/portsdb /usr/local/sbin/portsdb install -o root -g wheel -m 555 .build/portupgrade /usr/local/sbin/portupgrade install -o root -g wheel -m 555 .build/portversion /usr/local/sbin/portversion install -o root -g wheel -m 444 pkg_deinstall.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 pkg_fetch.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 pkg_glob.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 pkg_sort.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 pkgdb.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 portcvsweb.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 portsclean.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 portsdb.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 portupgrade.1.gz /usr/local/man/man1 install -o root -g wheel -m 444 portversion.1.gz /usr/local/man/man1 /usr/local/man/man1/pkg_which.1.gz -> /usr/local/man/man1/pkgdb.1.gz /usr/local/man/man1/portinstall.1.gz -> /usr/local/man/man1/portupgrade.1.gz /usr/local/man/man1/ports_glob.1.gz -> /usr/local/man/man1/portsdb.1.gz /usr/local/sbin/pkg_deinstall -> /usr/local/sbin/pkg_glob /usr/local/sbin/pkg_which -> /usr/local/sbin/pkgdb /usr/local/sbin/portinstall -> /usr/local/sbin/portupgrade /usr/local/sbin/ports_glob -> /usr/local/sbin/portsdb ===> etc (install) install -o root -g wheel -m 555 .build/status-pkg.sh /usr/local/etc/pkgtools.status-pkg.sh install -o root -g wheel -m 444 pkgtools.conf /usr/local/etc/pkgtools.conf.sample install -o root -g wheel -m 444 pkgtools.conf.5.gz /usr/local/man/man5 ===> lib (install) install -o root -g wheel -m 444 .build/pkg.rb .build/pkgdb.rb .build/pkginfo.rb .build/pkgmisc.rb .build/pkgtools.rb .build/pkgtsort.rb .build/pkgversion.rb .build/portinfo.rb .build/ports.rb .build/portsdb.rb `/usr/local/bin/ruby18 -rrbconfig -e 'puts "%s/%s.%s" % %w[sitedir MAJOR MINOR].map { |k| Config::CONFIG[k] }'` ===> misc (install) ===> misc/bash (install) mkdir -p /usr/local/share/examples/pkgtools/bash install -o root -g wheel -m 444 complete.sample /usr/local/share/examples/pkgtools/bash ===> misc/tcsh (install) mkdir -p /usr/local/share/examples/pkgtools/tcsh install -o root -g wheel -m 444 complete.sample /usr/local/share/examples/pkgtools/tcsh ===> misc/zsh (install) mkdir -p /usr/local/share/zsh/site-functions install -o root -g wheel -m 444 _pkgtools /usr/local/share/zsh/site-functions mkdir -p /usr/local/share/doc/pkgtools install -c -o root -g wheel -m 444 ChangeLog NEWS README /usr/local/share/doc/pkgtools ===> Running ldconfig /sbin/ldconfig -m /usr/local/lib/compat/pkg ===> Installing ldconfig configuration file ===> Running ldconfig /sbin/ldconfig -m /usr/local/lib/compat/pkg if [ ! -f /usr/local/etc/pkgtools.conf ]; then /bin/cp -p /usr/local/etc/pkgtools.conf.sample /usr/local/etc/pkgtools.conf; fi ===> Registering installation for portupgrade-2.1.3.1,2 ===> Cleaning for ruby-1.8.4_8,1 ===> Cleaning for ruby18-bdb-0.5.9 ===> Cleaning for perl-5.8.8 ===> Cleaning for db41-4.1.25_3 ===> Cleaning for portupgrade-2.1.3.1,2 ---> Cleaning out obsolete shared libraries [Updating the pkgdb <format:bdb_btree> in /var/db/pkg ... /var/db/pkg/pkgdb.db: unexpected file type or format -- Invalid argument; rebuild needed] [Rebuilding the pkgdb <format:bdb_btree> in /var/db/pkg ... /usr/local/lib/ruby/site_ruby/1.8/pkgdb.rb:647:in `which': /var/db/pkg/pkgdb.db: unexpected file type or format -- Invalid argument: Cannot update the pkgdb!]: Cannot update the pkgdb!] (PkgDB::DBError) from /usr/local/sbin/portsclean:322:in `libclean' from /usr/local/sbin/portsclean:306:in `libclean' from /usr/local/sbin/portsclean:153:in `main' from /usr/local/lib/ruby/1.8/optparse.rb:815:in `initialize' from /usr/local/sbin/portsclean:67:in `main' from /usr/local/sbin/portsclean:684 [Updating the pkgdb <format:bdb_btree> in /var/db/pkg ... /var/db/pkg/pkgdb.db: unexpected file type or format -- Invalid argument; rebuild needed] [Rebuilding the pkgdb <format:bdb_btree> in /var/db/pkg ... /var/db/pkg/pkgdb.db: unexpected file type or format -- Invalid argument: Cannot update the pkgdb!]: Cannot update the pkgdb!] /usr/local/lib/ruby/site_ruby/1.8/pkgtools.rb:444:in `__system': Command failed [exit code 1]: /usr/local/sbin/pkgdb -aFQ (CommandFailedError) from /usr/local/lib/ruby/site_ruby/1.8/pkgtools.rb:467:in `__sudo' from /usr/local/lib/ruby/site_ruby/1.8/pkgtools.rb:473:in `xsystem!' from /usr/local/lib/ruby/site_ruby/1.8/pkgdb.rb:960:in `autofix!' from /usr/local/lib/ruby/site_ruby/1.8/pkgdb.rb:956:in `autofix' from /usr/local/sbin/portupgrade:475:in `main' from /usr/local/sbin/portupgrade:714:in `main' from /usr/local/lib/ruby/1.8/optparse.rb:815:in `initialize' from /usr/local/sbin/portupgrade:209:in `main' from /usr/local/sbin/portupgrade:1951 chimera# I attempted to run pkgdb -fu to see if this might be of any assistandce: chimera# pkgdb -fu ---> Updating the pkgdb [Rebuilding the pkgdb <format:bdb_btree> in /var/db/pkg ... /var/db/pkg/pkgdb.db: unexpected file type or format -- Invalid argument: Cannot update the pkgdb!] chimera# >How-To-Repeat: Cvsup ports tree to today's latest Portupgrade portupgrade >Fix: Don't know. >Release-Note: >Audit-Trail: >Unformatted:
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