Date: Thu, 19 Apr 2007 11:33:14 -0500 (CDT) From: Jason Bacon <bacon@smithers.neuro.mcw.edu> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/111890: [maintainer update] science/afni: Advanced Functional Neuro Imaging Message-ID: <200704191633.l3JGXEgm015422@smithers.neuro.mcw.edu> Resent-Message-ID: <200704191640.l3JGeEn0017451@freefall.freebsd.org>
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>Number: 111890 >Category: ports >Synopsis: [maintainer update] science/afni: Advanced Functional Neuro Imaging >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Thu Apr 19 16:40:12 GMT 2007 >Closed-Date: >Last-Modified: >Originator: Jason Bacon >Release: FreeBSD 5.4-RELEASE i386 >Organization: >Environment: System: FreeBSD smithers.neuro.mcw.edu 5.4-RELEASE FreeBSD 5.4-RELEASE #2: Wed Aug 24 14:54:53 CDT 2005 >Description: This is a port of AFNI, Analysis of Functional Neuro Imaging. AFNI is a tool for analyzing 3 dimensional images, especially functional MRI images used in brain mapping research. WWW: http://afni.nimh.nih.gov/ -- Jason W. Bacon <bacon@smithers.neuro.mcw.edu> Generated with FreeBSD Port Tools 0.77 Note: Removed distfile afni_doc.tgz, which is no longer updated with the rest of the afni distribution. >How-To-Repeat: >Fix: diff -ruN /usr/ports/science/afni/Makefile science/afni/Makefile --- /usr/ports/science/afni/Makefile Fri Dec 1 08:07:50 2006 +++ science/afni/Makefile Wed Apr 18 18:53:33 2007 @@ -3,7 +3,7 @@ # Date created: 11 Jan 2005 # Whom: bacon@smithers.neuro.mcw.edu # -# $FreeBSD: ports/science/afni/Makefile,v 1.9 2006/12/01 14:07:50 laszlof Exp $ +# $FreeBSD$ # ############################################################################ @@ -16,14 +16,14 @@ # Makefile.BSD, which is included in the source distribution. PORTNAME= afni -PORTVERSION= 2006.06.30.1332 +PORTVERSION= 2007.04.18.1830 CATEGORIES= science biology graphics MASTER_SITES= http://www.neuro.mcw.edu/~bacon/Ports/distfiles/AFNI/${PORTVERSION}/ \ http://afni.nimh.nih.gov/pub/dist/tgz/ -DISTFILES= afni_src.tgz afni_doc.tgz afni.1 \ +DISTFILES= afni_src.tgz afni.1 \ TTatlas+tlrc.BRIK.gz TTatlas+tlrc.HEAD CA_EZ_v1.3c-May0806.tgz DIST_SUBDIR= AFNI-${PORTVERSION} -EXTRACT_ONLY= afni_src.tgz afni_doc.tgz CA_EZ_v1.3c-May0806.tgz +EXTRACT_ONLY= afni_src.tgz CA_EZ_v1.3c-May0806.tgz MAINTAINER= bacon@smithers.neuro.mcw.edu COMMENT= Advanced Functional Neuro Imaging @@ -31,12 +31,13 @@ RUN_DEPENDS= cjpeg:${PORTSDIR}/graphics/jpeg \ mpeg_encode:${PORTSDIR}/multimedia/mpeg_encode \ whirlgif:${PORTSDIR}/graphics/whirlgif \ - ppmtogif:${PORTSDIR}/graphics/netpbm + ppmtogif:${PORTSDIR}/graphics/netpbm \ + endian:${PORTSDIR}/sysutils/endian .include <bsd.port.pre.mk> .if ${ARCH} == "sparc64" -BROKEN= Does not compile on sparc64: "undefined reference to `_mcount'" +BROKEN= Does not compile on sparc64: "undefined reference to '_mcount'" .endif USE_GETTEXT= yes @@ -54,89 +55,58 @@ MAN1= afni.1 -# these need not to be stripped -SCRIPTS=\ - @2dwarper \ - @4Daverage \ - @AfniOrient2RAImap \ - @AfniOrientSign \ - @Align_Centers \ - @Center_Distance \ - @CheckForAfniDset \ - @CommandGlobb \ - @DoPerRoi.py \ - @DTI_studio_reposition \ - @FromRAI \ - @GetAfniOrient \ - @GetAfniPrefix \ - @GetAfniView \ - @IsoMasks \ - @NoExt \ - @Purify_1D \ - @RenamePanga \ - @SUMA_AlignToExperiment \ - @SUMA_Make_Spec_Caret \ - @SUMA_Make_Spec_FS \ - @SUMA_Make_Spec_SF \ - @ToRAI \ - @UpdateAfni \ - @VolCenter \ - @align_partial_oblique \ - @auto_align \ - @auto_tlrc \ - @clip_volume \ - @fix_FSsphere \ - @make_stim_file \ - @np \ - @parse_afni_name \ - @parse_name \ - afni_base.py \ - 3dMax \ - suma_change_spec - -PLIST_FILES+= ${SCRIPTS:S|^|bin/|} - INSTALL_WRKSRC= ${WRKSRC}/BSD -INSTALL_TEMP= ${WRKSRC}/Backup.BSD +STAGE= ${WRKSRC}/stage post-extract: ${CP} -f ${FILESDIR}/Makefile.FreeBSD_PORT ${WRKSRC} ${CP} ${DISTDIR}/${DIST_SUBDIR}/afni.1 ${WRKDIR} ${REINPLACE_CMD} -e 's|%%PREFIX%%|${PREFIX}|g' ${WRKDIR}/afni.1 - @${REINPLACE_CMD} -e 's|/usr/X11R6|${X11BASE}|g' ${WRKSRC}/Makefile.FreeBSD_PORT -do-install: - ${MKDIR} ${DATADIR} ${INSTALL_TEMP} \ - ${PREFIX}/lib/afni ${PREFIX}/include/afni - @${MV} ${INSTALL_WRKSRC}/libf2c.a ${INSTALL_TEMP} - ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.so ${INSTALL_WRKSRC}/*.a \ - ${PREFIX}/lib/afni - ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.h \ - ${PREFIX}/include/afni - ${INSTALL_DATA} ${INSTALL_WRKSRC}/*.jpg ${INSTALL_WRKSRC}/*.txt \ - ${DATADIR} - @${MV} ${INSTALL_WRKSRC}/*.so \ - ${INSTALL_WRKSRC}/*.a \ - ${INSTALL_WRKSRC}/*.h \ - ${INSTALL_WRKSRC}/*.jpg \ - ${INSTALL_WRKSRC}/*.txt \ - ${INSTALL_WRKSRC}/cjpeg \ +post-build: + ${MKDIR} ${STAGE}/bin \ + ${STAGE}/scripts \ + ${STAGE}/lib \ + ${STAGE}/include \ + ${STAGE}/trash \ + ${STAGE}/doc \ + ${STAGE}/share + ${MV} ${INSTALL_WRKSRC}/libf2c.a \ + ${INSTALL_WRKSRC}/cjpeg \ ${INSTALL_WRKSRC}/djpeg \ ${INSTALL_WRKSRC}/mpeg_encode \ ${INSTALL_WRKSRC}/whirlgif \ - ${INSTALL_TEMP} -.for f in ${SCRIPTS} - ${INSTALL_SCRIPT} ${INSTALL_WRKSRC}/${f} ${PREFIX}/bin - @${MV} ${INSTALL_WRKSRC}/${f} ${INSTALL_TEMP} -.endfor - ${INSTALL_PROGRAM} ${INSTALL_WRKSRC}/* ${PREFIX}/bin + ${STAGE}/trash + ${MV} ${INSTALL_WRKSRC}/*.a \ + ${INSTALL_WRKSRC}/*.so \ + ${STAGE}/lib + ${MV} ${INSTALL_WRKSRC}/*.jpg \ + ${INSTALL_WRKSRC}/*.txt \ + ${INSTALL_WRKSRC}/AFNI.*rc \ + ${STAGE}/share + ${MV} ${INSTALL_WRKSRC}/*.h \ + ${STAGE}/include + ${MV} ${INSTALL_WRKSRC}/README* \ + ${STAGE}/doc + for binary in `${FILE} ${INSTALL_WRKSRC}/* | fgrep 'ELF' | ${AWK} -F ':' ' { print $$1 }'` ; do \ + ${MV} $${binary} ${STAGE}/bin ; \ + done + ${MV} ${INSTALL_WRKSRC}/* \ + ${STAGE}/scripts + +do-install: + ${MKDIR} ${DATADIR} ${PREFIX}/lib/afni ${PREFIX}/include/afni + ${INSTALL_DATA} ${STAGE}/lib/* ${PREFIX}/lib/afni + ${INSTALL_DATA} ${STAGE}/include/* ${PREFIX}/include/afni + ${INSTALL_DATA} ${STAGE}/share/* ${DATADIR} + ${INSTALL_PROGRAM} ${STAGE}/bin/* ${PREFIX}/bin + ${INSTALL_SCRIPT} ${STAGE}/scripts/* ${PREFIX}/bin ${INSTALL_DATA} ${DISTDIR}/${DIST_SUBDIR}/TTatlas* ${DATADIR} ${INSTALL_DATA} ${WRKDIR}/CA_EZ_v1.3c-May0806/* ${DATADIR} ${INSTALL_MAN} ${WRKDIR}/afni.1 ${PREFIX}/man/man1 - @${MV} ${INSTALL_TEMP}/* ${INSTALL_WRKSRC} .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} - ${INSTALL_DATA} ${WRKDIR}/afni_doc/* ${DOCSDIR} + ${INSTALL_DATA} ${STAGE}/doc/* ${DOCSDIR} .endif post-install: diff -ruN /usr/ports/science/afni/distinfo science/afni/distinfo --- /usr/ports/science/afni/distinfo Sun Sep 24 13:24:08 2006 +++ science/afni/distinfo Wed Apr 18 18:33:41 2007 @@ -1,18 +1,15 @@ -MD5 (AFNI-2006.06.30.1332/afni_src.tgz) = 3b496d379b62c57e2d27a1554da5cf29 -SHA256 (AFNI-2006.06.30.1332/afni_src.tgz) = f249e0b8f89a9bae4751d10785acc9e9b71ae179b42853a6c2b1977a9c363c98 -SIZE (AFNI-2006.06.30.1332/afni_src.tgz) = 11178437 -MD5 (AFNI-2006.06.30.1332/afni_doc.tgz) = 3b085de85fc46908652ae287d1cceb38 -SHA256 (AFNI-2006.06.30.1332/afni_doc.tgz) = 28bfcb085d97f63a7e6b753d784908d7f90d9d3ba735d96b18c1e893af4d6cd1 -SIZE (AFNI-2006.06.30.1332/afni_doc.tgz) = 3267095 -MD5 (AFNI-2006.06.30.1332/afni.1) = 7678276880116dcab3324dbf43d0ebf6 -SHA256 (AFNI-2006.06.30.1332/afni.1) = 5598ef2f409797c463bc90d0db44c283357dde9fdaebb943ded70ac8c0aa11c3 -SIZE (AFNI-2006.06.30.1332/afni.1) = 1702 -MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee -SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd -SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.BRIK.gz) = 159912 -MD5 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5 -SHA256 (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919 -SIZE (AFNI-2006.06.30.1332/TTatlas+tlrc.HEAD) = 1750 -MD5 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150 -SHA256 (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31 -SIZE (AFNI-2006.06.30.1332/CA_EZ_v1.3c-May0806.tgz) = 2652278 +MD5 (AFNI-2007.04.18.1830/afni_src.tgz) = 90ecae8727cadc6172517bc7149be67e +SHA256 (AFNI-2007.04.18.1830/afni_src.tgz) = 53796de972179f122ab7c557bf29d3511ed113119d04707e16b0766763f49c21 +SIZE (AFNI-2007.04.18.1830/afni_src.tgz) = 11283995 +MD5 (AFNI-2007.04.18.1830/afni.1) = 80cc1f1c6ca0ef59a3032ad63abfbdd5 +SHA256 (AFNI-2007.04.18.1830/afni.1) = 647815326aa676d005fa15de116a6f046b486530aa50a3100d8b29c11da8aaf7 +SIZE (AFNI-2007.04.18.1830/afni.1) = 1702 +MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = f5a107b049bc426af5342565f4e5beee +SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 0b5b087006e07e05c5f0c8306acaade955924f744457cec0c00844cc2e9e67cd +SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.BRIK.gz) = 159912 +MD5 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = a0ca787a2996d7e66548176808503ac5 +SHA256 (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 51c3fb158990616f355fea56886fc7c85d80ac96779f5a65a8f69207c2a85919 +SIZE (AFNI-2007.04.18.1830/TTatlas+tlrc.HEAD) = 1750 +MD5 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = dbb2caab5c030c505b306e1526d19150 +SHA256 (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = b4e9a6bbb2324c01f70d50e911793e637373040c8cca8e5f17882a146396bc31 +SIZE (AFNI-2007.04.18.1830/CA_EZ_v1.3c-May0806.tgz) = 2652278 diff -ruN /usr/ports/science/afni/pkg-message science/afni/pkg-message --- /usr/ports/science/afni/pkg-message Sun Sep 24 13:24:08 2006 +++ science/afni/pkg-message Wed Apr 18 13:57:30 2007 @@ -9,4 +9,9 @@ For AFNI configuration and usage, please visit the AFNI WEB site at http://afni.nimh.nih.gov. + +For large 3dDeconvolve analyses, you may need to increase the shared +memory limit on your system. For instructions, visit + +http://www.neuro.mcw.edu/~bacon/FreeBSD_MRI/ ============================================================================= diff -ruN /usr/ports/science/afni/pkg-plist science/afni/pkg-plist --- /usr/ports/science/afni/pkg-plist Sun Sep 24 13:24:08 2006 +++ science/afni/pkg-plist Wed Apr 18 19:04:22 2007 @@ -1,3 +1,5 @@ +bin/1dMarry +bin/1dSEM bin/1dcat bin/1ddot bin/1deval @@ -22,6 +24,8 @@ bin/3dANOVA bin/3dANOVA2 bin/3dANOVA3 +bin/3dAcost +bin/3dAllineate bin/3dAnatNudge bin/3dAnhist bin/3dAttribute @@ -29,21 +33,25 @@ bin/3dAutobox bin/3dAutomask bin/3dBRAIN_VOYAGERtoAFNI +bin/3dBlurToFWHM bin/3dBrickStat bin/3dCM bin/3dCRUISEtoAFNI bin/3dClipLevel bin/3dConvolve +bin/3dDFT bin/3dDTeig bin/3dDWItoDT bin/3dDeconvolve bin/3dDeconvolve_f bin/3dDespike bin/3dDetrend +bin/3dEmpty bin/3dEntropy bin/3dExtrema bin/3dFDR bin/3dFWHM +bin/3dFWHMx bin/3dFourier bin/3dFriedman bin/3dGetrow @@ -51,9 +59,11 @@ bin/3dInvFMRI bin/3dKruskalWallis bin/3dLRflip +bin/3dLocalBistat bin/3dLocalstat bin/3dMINCtoAFNI bin/3dMannWhitney +bin/3dMax bin/3dMean bin/3dMedianFilter bin/3dNLfim @@ -67,6 +77,7 @@ bin/3dStatClust bin/3dSurf2Vol bin/3dSurfMask +bin/3dSynthesize bin/3dTSgen bin/3dTagalign bin/3dTcat @@ -124,6 +135,44 @@ bin/3dttest bin/3dvolreg bin/4swap +bin/@2dwarper +bin/@4Daverage +bin/@AfniOrient2RAImap +bin/@AfniOrientSign +bin/@Align_Centers +bin/@Center_Distance +bin/@CheckForAfniDset +bin/@CommandGlobb +bin/@DTI_studio_reposition +bin/@DoPerRoi.py +bin/@FindAfniDsetPath +bin/@FromRAI +bin/@GetAfniID +bin/@GetAfniOrient +bin/@GetAfniPrefix +bin/@GetAfniView +bin/@IsoMasks +bin/@NoExt +bin/@Purify_1D +bin/@RenamePanga +bin/@SUMA_AlignToExperiment +bin/@SUMA_Make_Spec_Caret +bin/@SUMA_Make_Spec_FS +bin/@SUMA_Make_Spec_SF +bin/@ToRAI +bin/@UpdateAfni +bin/@VolCenter +bin/@align_partial_oblique +bin/@auto_align +bin/@auto_tlrc +bin/@clip_volume +bin/@escape- +bin/@fix_FSsphere +bin/@float_fix +bin/@make_stim_file +bin/@np +bin/@parse_afni_name +bin/@parse_name bin/AlphaSim bin/AnalyzeTrace bin/CompareSurfaces @@ -133,6 +182,7 @@ bin/CreateIcosahedron bin/DTIStudioFibertoSegments bin/Dimon +bin/DriveSuma bin/FD2 bin/FSread_annot bin/Ifile @@ -150,6 +200,7 @@ bin/ScaleToMap bin/SurfClust bin/SurfDsetInfo +bin/SurfInfo bin/SurfMeasures bin/SurfPatch bin/SurfQual @@ -161,13 +212,18 @@ bin/abut bin/adwarp bin/afni +bin/afni_base.py +bin/afni_proc.py +bin/afni_util.py bin/afni_vcheck bin/aiv +bin/ask_me.py bin/byteorder bin/cat_matvec bin/ccalc bin/cdf bin/count +bin/db_mod.py bin/dicom_hdr bin/dicom_to_raw bin/ent16 @@ -182,6 +238,7 @@ bin/imand bin/imaver bin/imcalc +bin/imcat bin/imcutup bin/imdump bin/immask @@ -191,14 +248,15 @@ bin/imstat bin/imupsam bin/inspec +bin/make_stim_times.py bin/mayo_analyze -bin/mpegtoppm bin/mritopgm bin/myget bin/nicat bin/nifti1_test bin/nifti_tool bin/nsize +bin/option_list.py bin/p2t bin/plugout_drive bin/plugout_ijk @@ -215,6 +273,7 @@ bin/sqwave bin/strblast bin/suma +bin/suma_change_spec bin/tfim bin/to3d bin/waver @@ -252,6 +311,7 @@ lib/afni/model_constant.so lib/afni/model_convgamma.so lib/afni/model_convgamma2a.so +lib/afni/model_demri_3.so lib/afni/model_diffexp.so lib/afni/model_diffusion.so lib/afni/model_gammavar.so @@ -266,6 +326,7 @@ lib/afni/model_squarewave_apf.so lib/afni/model_trnglwave_ap.so lib/afni/model_trnglwave_apf.so +lib/afni/model_zero.so lib/afni/plug_3Ddump_V2.so lib/afni/plug_3ddot.so lib/afni/plug_3ddup.so @@ -314,6 +375,8 @@ lib/afni/plug_volreg.so lib/afni/plug_wavelets.so lib/afni/plug_zeropad.so +%%DATADIR%%/AFNI.afnirc +%%DATADIR%%/AFNI.sumarc %%DATADIR%%/Dist_Stamp %%DATADIR%%/Readme_dist %%DATADIR%%/TT_N27+tlrc.BRIK.gz @@ -328,11 +391,6 @@ %%DATADIR%%/TT_N27_EZ_ML+tlrc.HEAD %%DATADIR%%/TTatlas+tlrc.BRIK.gz %%DATADIR%%/TTatlas+tlrc.HEAD -%%DATADIR%%/face_erinskinner.jpg -%%DATADIR%%/face_hang_joon_jo.jpg -%%DATADIR%%/face_melissah.jpg -%%DATADIR%%/face_sumabucks.jpg -%%DATADIR%%/splash_sscc2006.jpg %%DATADIR%%/face_JimEliassen.jpg %%DATADIR%%/face_JohannaBaas.jpg %%DATADIR%%/face_SalloumJB.jpg @@ -342,6 +400,7 @@ %%DATADIR%%/face_afniman.jpg %%DATADIR%%/face_agoldman.jpg %%DATADIR%%/face_ahammett.jpg +%%DATADIR%%/face_alexandrakofinis.jpg %%DATADIR%%/face_anewmanetal.jpg %%DATADIR%%/face_anugent.jpg %%DATADIR%%/face_asanders.jpg @@ -366,9 +425,11 @@ %%DATADIR%%/face_cscholl.jpg %%DATADIR%%/face_csenior.jpg %%DATADIR%%/face_cwettig.jpg +%%DATADIR%%/face_daveperlman.jpg %%DATADIR%%/face_dglen.jpg %%DATADIR%%/face_einstein.jpg %%DATADIR%%/face_eli.jpg +%%DATADIR%%/face_erinskinner.jpg %%DATADIR%%/face_ernv.jpg %%DATADIR%%/face_eteoh.jpg %%DATADIR%%/face_faustalui.jpg @@ -379,6 +440,9 @@ %%DATADIR%%/face_ggiulietti.jpg %%DATADIR%%/face_glarkin.jpg %%DATADIR%%/face_grant.jpg +%%DATADIR%%/face_guidon.jpg +%%DATADIR%%/face_hamepark.jpg +%%DATADIR%%/face_hang_joon_jo.jpg %%DATADIR%%/face_hanlon.jpg %%DATADIR%%/face_heekeren.jpg %%DATADIR%%/face_hoffmangobbini.jpg @@ -417,6 +481,7 @@ %%DATADIR%%/face_mbeauchamp.jpg %%DATADIR%%/face_mbelmonte.jpg %%DATADIR%%/face_megcrew.jpg +%%DATADIR%%/face_melissah.jpg %%DATADIR%%/face_mgarolera.jpg %%DATADIR%%/face_mkenney.jpg %%DATADIR%%/face_mmaieron.jpg @@ -450,12 +515,15 @@ %%DATADIR%%/face_sjapee.jpg %%DATADIR%%/face_skammy.jpg %%DATADIR%%/face_skapdoskar.jpg +%%DATADIR%%/face_sknoonan.jpg %%DATADIR%%/face_smarrett.jpg %%DATADIR%%/face_ssaad.jpg %%DATADIR%%/face_ssmall.jpg %%DATADIR%%/face_steverao.jpg +%%DATADIR%%/face_sumabucks.jpg %%DATADIR%%/face_tieshan.jpg %%DATADIR%%/face_tolkien.jpg +%%DATADIR%%/face_vdcosta.jpg %%DATADIR%%/face_vhradil.jpg %%DATADIR%%/face_vincent1.jpg %%DATADIR%%/face_vincent2.jpg @@ -491,63 +559,8 @@ %%DATADIR%%/splash_marsalbor.jpg %%DATADIR%%/splash_mcw03.jpg %%DATADIR%%/splash_sscc03.jpg +%%DATADIR%%/splash_sscc2006.jpg %%DATADIR%%/splash_vincent.jpg -%%PORTDOCS%%%%DOCSDIR%%/1dplot.ps -%%PORTDOCS%%%%DOCSDIR%%/24swap.ps -%%PORTDOCS%%%%DOCSDIR%%/2dImReg.ps -%%PORTDOCS%%%%DOCSDIR%%/2swap.ps -%%PORTDOCS%%%%DOCSDIR%%/3T_toafni.ps -%%PORTDOCS%%%%DOCSDIR%%/3dANOVA.ps -%%PORTDOCS%%%%DOCSDIR%%/3dANOVA2.ps -%%PORTDOCS%%%%DOCSDIR%%/3dANOVA3.ps -%%PORTDOCS%%%%DOCSDIR%%/3dDeconvolve.ps -%%PORTDOCS%%%%DOCSDIR%%/3dExtrema.ps -%%PORTDOCS%%%%DOCSDIR%%/3dFDR.ps -%%PORTDOCS%%%%DOCSDIR%%/3dFWHM.ps -%%PORTDOCS%%%%DOCSDIR%%/3dFriedman.ps -%%PORTDOCS%%%%DOCSDIR%%/3dIntracranial.ps -%%PORTDOCS%%%%DOCSDIR%%/3dKruskalWallis.ps -%%PORTDOCS%%%%DOCSDIR%%/3dMannWhitney.ps -%%PORTDOCS%%%%DOCSDIR%%/3dNLfim.ps -%%PORTDOCS%%%%DOCSDIR%%/3dRegAna.ps -%%PORTDOCS%%%%DOCSDIR%%/3dStatClust.ps -%%PORTDOCS%%%%DOCSDIR%%/3dTSgen.ps -%%PORTDOCS%%%%DOCSDIR%%/3dTcat.ps -%%PORTDOCS%%%%DOCSDIR%%/3dTsmooth.ps -%%PORTDOCS%%%%DOCSDIR%%/3dWavelets.ps -%%PORTDOCS%%%%DOCSDIR%%/3dWilcoxon.ps -%%PORTDOCS%%%%DOCSDIR%%/3daxialize.ps -%%PORTDOCS%%%%DOCSDIR%%/3dbuc2fim.ps -%%PORTDOCS%%%%DOCSDIR%%/3dbucket.ps -%%PORTDOCS%%%%DOCSDIR%%/3dcalc.ps -%%PORTDOCS%%%%DOCSDIR%%/3dclust.ps -%%PORTDOCS%%%%DOCSDIR%%/3dcolon.ps -%%PORTDOCS%%%%DOCSDIR%%/3ddup.ps -%%PORTDOCS%%%%DOCSDIR%%/3dfim+.ps -%%PORTDOCS%%%%DOCSDIR%%/3dfim.ps -%%PORTDOCS%%%%DOCSDIR%%/3dfractionize.ps -%%PORTDOCS%%%%DOCSDIR%%/3dhistog.ps -%%PORTDOCS%%%%DOCSDIR%%/3dinfo.ps -%%PORTDOCS%%%%DOCSDIR%%/3dmaskave.ps -%%PORTDOCS%%%%DOCSDIR%%/3dmerge.ps -%%PORTDOCS%%%%DOCSDIR%%/3dnewid.ps -%%PORTDOCS%%%%DOCSDIR%%/3dnoise.ps -%%PORTDOCS%%%%DOCSDIR%%/3dnvals.ps -%%PORTDOCS%%%%DOCSDIR%%/3dpc.ps -%%PORTDOCS%%%%DOCSDIR%%/3dproject.ps -%%PORTDOCS%%%%DOCSDIR%%/3drefit.ps -%%PORTDOCS%%%%DOCSDIR%%/3drotate.ps -%%PORTDOCS%%%%DOCSDIR%%/3dttest.ps -%%PORTDOCS%%%%DOCSDIR%%/3dvolreg.ps -%%PORTDOCS%%%%DOCSDIR%%/4swap.ps -%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.cox -%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.rhammett -%%PORTDOCS%%%%DOCSDIR%%/AFNI.changes.rickr -%%PORTDOCS%%%%DOCSDIR%%/AlphaSim.ps -%%PORTDOCS%%%%DOCSDIR%%/AlphaSim_fig.ps -%%PORTDOCS%%%%DOCSDIR%%/FD2.ps -%%PORTDOCS%%%%DOCSDIR%%/Nonparametric.ps -%%PORTDOCS%%%%DOCSDIR%%/README %%PORTDOCS%%%%DOCSDIR%%/README.Ifile %%PORTDOCS%%%%DOCSDIR%%/README.attributes %%PORTDOCS%%%%DOCSDIR%%/README.bzip2 @@ -568,41 +581,6 @@ %%PORTDOCS%%%%DOCSDIR%%/README.volreg %%PORTDOCS%%%%DOCSDIR%%/README.web %%PORTDOCS%%%%DOCSDIR%%/README.ziad -%%PORTDOCS%%%%DOCSDIR%%/RSFgen.ps -%%PORTDOCS%%%%DOCSDIR%%/Table.ps -%%PORTDOCS%%%%DOCSDIR%%/abut.ps -%%PORTDOCS%%%%DOCSDIR%%/adwarp.ps -%%PORTDOCS%%%%DOCSDIR%%/afni200.ps -%%PORTDOCS%%%%DOCSDIR%%/afni_aux.ps -%%PORTDOCS%%%%DOCSDIR%%/afni_plugins.ps -%%PORTDOCS%%%%DOCSDIR%%/afni_register.ps -%%PORTDOCS%%%%DOCSDIR%%/buckets.ps -%%PORTDOCS%%%%DOCSDIR%%/byteorder.ps -%%PORTDOCS%%%%DOCSDIR%%/ccalc.ps -%%PORTDOCS%%%%DOCSDIR%%/cdf.ps -%%PORTDOCS%%%%DOCSDIR%%/count.ps -%%PORTDOCS%%%%DOCSDIR%%/fim2.ps -%%PORTDOCS%%%%DOCSDIR%%/float_scan.ps -%%PORTDOCS%%%%DOCSDIR%%/from3d.ps -%%PORTDOCS%%%%DOCSDIR%%/ftosh.ps -%%PORTDOCS%%%%DOCSDIR%%/imand.ps -%%PORTDOCS%%%%DOCSDIR%%/imaver.ps -%%PORTDOCS%%%%DOCSDIR%%/imcalc.ps -%%PORTDOCS%%%%DOCSDIR%%/imdump.ps -%%PORTDOCS%%%%DOCSDIR%%/immask.ps -%%PORTDOCS%%%%DOCSDIR%%/imreg.ps -%%PORTDOCS%%%%DOCSDIR%%/imrotate.ps -%%PORTDOCS%%%%DOCSDIR%%/imstack.ps -%%PORTDOCS%%%%DOCSDIR%%/imstat.ps -%%PORTDOCS%%%%DOCSDIR%%/imupsam.ps -%%PORTDOCS%%%%DOCSDIR%%/mritopgm.ps -%%PORTDOCS%%%%DOCSDIR%%/nsize.ps -%%PORTDOCS%%%%DOCSDIR%%/p2t.ps -%%PORTDOCS%%%%DOCSDIR%%/sfim.ps -%%PORTDOCS%%%%DOCSDIR%%/sqwave.ps -%%PORTDOCS%%%%DOCSDIR%%/tfim.ps -%%PORTDOCS%%%%DOCSDIR%%/to3d.ps -%%PORTDOCS%%%%DOCSDIR%%/waver.ps %%PORTDOCS%%@dirrm %%DOCSDIR%% @dirrm %%DATADIR%% @dirrm lib/afni >Release-Note: >Audit-Trail: >Unformatted:
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