Date: Tue, 14 May 2013 07:17:16 -0400 From: Carmel <carmel_ny@hotmail.com> To: freebsd-ports@freebsd.org, ports@FreeBSD.org Subject: science/avogadro fails to build Message-ID: <BLU0-SMTP2967D1D87E443C905F63EA293A10@phx.gbl>
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FreeBSD-8.3 STABLE amd64 Evidently=2C the "science/avogadro" port does not have a full time maintainer. In that case=2C I will report the problem here. Basically=2C the port refused to build. It ends with this output: (it probably suffers severe line wrap distortion) cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography && /usr/bin/c++ -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dcrystallographyextension_EXPORTS -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fPIC -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/include -I/usr/local/include/qt4 -I/usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtCore -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/gl2ps -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/crystallography -o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -c /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography/ui/moc_ceviewoptionswidget.cxx Linking CXX shared module ../../../../lib/crystallographyextension.so cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/crystallography && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/crystallographyextension.dir/link.txt --verbose=3D1 /usr/bin/c++ -fPIC -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -L/usr/local/lib -shared -Wl=2C-soname=2Ccrystallographyextension.so -o ../../../../lib/crystallographyextension.so CMakeFiles/crystallographyextension.dir/avospglib.cpp.o CMakeFiles/crystallographyextension.dir/ceundo.cpp.o CMakeFiles/crystallographyextension.dir/crystallographyextension.cpp.o CMakeFiles/crystallographyextension.dir/crystalpastedialog.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstractdockwidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceabstracteditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cecoordinateeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/cematrixeditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceparametereditor.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceslabbuilder.cpp.o CMakeFiles/crystallographyextension.dir/ui/cetranslatewidget.cpp.o CMakeFiles/crystallographyextension.dir/ui/ceviewoptionswidget.cpp.o CMakeFiles/crystallographyextension.dir/moc_crystallographyextension.cxx.o CMakeFiles/crystallographyextension.dir/moc_crystalpastedialog.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstractdockwidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceabstracteditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cecoordinateeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cematrixeditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceparametereditor.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceslabbuilder.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_cetranslatewidget.cxx.o CMakeFiles/crystallographyextension.dir/ui/moc_ceviewoptionswidget.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.0 /usr/local/lib/qt4/li= bQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel /usr/local/lib/libGLU.so /usr/local/lib/libGL.so /usr/local/lib= /libSM.so /usr/local/lib/libICE.so /usr/local/lib/libX11.so /usr/local/lib/= libXext.so spglib/libspglib.a -Wl=2C-rpath=2C/usr/ports/science/avogadro/work/avogadro-1.1.0/lib:/usr/loc= al/lib:/usr/local/lib/qt4: /usr/bin/ld: spglib/libspglib.a(spglib.c.o): relocation R_X86_64_32 can not be used when making a shared object=3B recompile with -fPIC spglib/libspglib.a: could not read symbols: Bad value *** Error code 1 1 error *** Error code 2 /usr/local/bin/cmake -E cmake_progress_report /usr/ports/science/avogadro/work/avogadro-1.1.0/CMake= Files [ 65%] Building CXX object libavogadro/src/extensions/spectra/CMakeFiles/spectraextension.dir/uv.cpp.o cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra && /usr/bin/c++ -DHAVE_GCC_VISIBILITY -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_OPENGL_LIB -DQT_PLUGIN -DQT_SHARED -D_BSD_SOURCE -Dspectraextension_EXPORTS -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fPIC -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/include -I/usr/local/include/qt4 -I/usr/local/include/qt4/QtOpenGL -I/usr/local/include/qt4/QtGui -I/usr/local/include/qt4/QtCore -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src -I/usr/local/include/eigen2 -I/usr/local/include/openbabel-2.0 -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/gl2ps -I/usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extension= s/spectra -o CMakeFiles/spectraextension.dir/uv.cpp.o -c /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra/uv.cpp Linking CXX shared module ../../../../lib/spectraextension.so cd /usr/ports/science/avogadro/work/avogadro-1.1.0/libavogadro/src/extensio= ns/spectra && /usr/local/bin/cmake -E cmake_link_script CMakeFiles/spectraextension.dir/link.txt --verbose=3D1 /usr/bin/c++ -fPIC -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -fvisibility=3Dhidden -fvisibility-inlines-hidden -fpermissive -O2 -pipe -march=3Dathlon64 -idirafter /usr/local/include -fno-strict-aliasing -L/usr/local/lib -shared -Wl=2C-soname=2Cspectraextension.so -o ../../../../lib/spectraextension.so CMakeFiles/spectraextension.dir/spectraextension.cpp.o CMakeFiles/spectraextension.dir/spectradialog.cpp.o CMakeFiles/spectraextension.dir/spectratype.cpp.o CMakeFiles/spectraextension.dir/abstract_ir.cpp.o CMakeFiles/spectraextension.dir/ir.cpp.o CMakeFiles/spectraextension.dir/nmr.cpp.o CMakeFiles/spectraextension.dir/dos.cpp.o CMakeFiles/spectraextension.dir/uv.cpp.o CMakeFiles/spectraextension.dir/cd.cpp.o CMakeFiles/spectraextension.dir/raman.cpp.o CMakeFiles/spectraextension.dir/moc_spectraextension.cxx.o CMakeFiles/spectraextension.dir/moc_spectradialog.cxx.o CMakeFiles/spectraextension.dir/moc_spectratype.cxx.o CMakeFiles/spectraextension.dir/moc_abstract_ir.cxx.o CMakeFiles/spectraextension.dir/moc_ir.cxx.o CMakeFiles/spectraextension.dir/moc_nmr.cxx.o CMakeFiles/spectraextension.dir/moc_dos.cxx.o CMakeFiles/spectraextension.dir/moc_uv.cxx.o CMakeFiles/spectraextension.dir/moc_cd.cxx.o CMakeFiles/spectraextension.dir/moc_raman.cxx.o -L/usr/local/lib ../../../../lib/libavogadro.so.1.1.0 /usr/local/lib/qt4/li= bQtCore.so /usr/local/lib/qt4/libQtGui.so -lopenbabel -Wl=2C-rpath=2C/usr/ports/science/avogadro/work/avogadro-1.1.0/lib:/usr/loc= al/lib:/usr/local/lib/qt4: /usr/local/bin/cmake -E cmake_progress_report /usr/ports/science/avogadro/work/avogadro-1.1.0/CMake= Files 85 86 87 88 89 [ 65%] Built target spectraextension 1 error *** Error code 2 1 error *** Error code 1 The full build log can be viewed here: "http://seibercom.net/logs/avogadro_build.txt" --=20 Carmel =E2=9C=8C carmel_ny@hotmail.com
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