From owner-freebsd-pkg-fallout@freebsd.org Tue Aug 22 12:44:04 2017 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C4D1EDE8B34 for ; Tue, 22 Aug 2017 12:44:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id B1CE48495E for ; Tue, 22 Aug 2017 12:44:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id ADC0ADE8B33; Tue, 22 Aug 2017 12:44:04 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id AD376DE8B32 for ; Tue, 22 Aug 2017 12:44:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (package19.nyi.freebsd.org [IPv6:2610:1c1:1:6082::16:f5]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 7E7978495D; Tue, 22 Aug 2017 12:44:04 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from package19.nyi.freebsd.org (localhost [127.0.0.1]) by package19.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id v7MCi3Gw048475; Tue, 22 Aug 2017 12:44:03 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by package19.nyi.freebsd.org (8.15.2/8.15.2/Submit) id v7MCi3u3048450; Tue, 22 Aug 2017 12:44:03 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Tue, 22 Aug 2017 12:44:03 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201708221244.v7MCi3u3048450@package19.nyi.freebsd.org> To: wen@FreeBSD.org Subject: [exp - 103i386-default-build-as-user][science/R-cran-AMORE] Failed for R-cran-AMORE-0.2.14_3 in stage Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 22 Aug 2017 12:44:04 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Last committer: dbn@FreeBSD.org Ident: $FreeBSD: head/science/R-cran-AMORE/Makefile 443845 2017-06-18 18:09:16Z dbn $ Log URL: http://package19.nyi.freebsd.org/data/103i386-default-build-as-user/448504/logs/R-cran-AMORE-0.2.14_3.log Build URL: http://package19.nyi.freebsd.org/build.html?mastername=103i386-default-build-as-user&build=448504 Log: ====>> Building science/R-cran-AMORE build started at Tue Aug 22 12:43:14 UTC 2017 port directory: /usr/ports/science/R-cran-AMORE building for: FreeBSD 103i386-default-build-as-user-job-23 10.3-RELEASE-p21 FreeBSD 10.3-RELEASE-p21 i386 maintained by: wen@FreeBSD.org Makefile ident: $FreeBSD: head/science/R-cran-AMORE/Makefile 443845 2017-06-18 18:09:16Z dbn $ Poudriere version: 3.1.19-61-ga8829ba9 Host OSVERSION: 1200040 Jail OSVERSION: 1003000 Job Id: 23 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1003000 UNAME_v=FreeBSD 10.3-RELEASE-p21 UNAME_r=10.3-RELEASE-p21 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/poudriere/data/.m/103i386-default-build-as-user/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=R-cran-AMORE-0.2.14_3 OLDPWD=/ PWD=/poudriere/data/.m/103i386-default-build-as-user/ref/.p/pool MASTERNAME=103i386-default-build-as-user SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-61-ga8829ba9 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh GID=0 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran5" FC="gfortran5" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc5" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc5" XDG_DATA_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work HOME=/wrkdirs/usr/ports/science/R-cran-AMORE/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc5 -L/usr/local/lib/gcc5 -B/usr/local/ bin -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/AMORE OSREL=10.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/AMORE" EXAMPLESDIR="share/examples/AMORE" DATADIR="share/AMORE" WWWDIR="www/AMORE" ETCDIR="etc/AMORE" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/AMORE DOCSDIR=/usr/local/share/doc/AMORE EXAMPLESDIR=/usr/local/share/examples/AMORE WWWDIR=/usr/local/www/AMORE ETCDIR=/usr/local/etc/AMORE --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles FORCE_PACKAGE=yes PACKAGE_BUILDING=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=i386 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=10.3 OSVERSION=1003000 PYTHONBASE=/usr/local _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=10.3-RELEASE-p21 #### Misc Poudriere #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited sbsize (bytes, -b) unlimited pseudo-terminals (-p) unlimited --End resource limits-- =================================================== ===> License GPLv2 GPLv3 accepted by the user =========================================================================== =================================================== ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [103i386-default-build-as-user-job-23] Installing pkg-1.10.1... [103i386-default-build-as-user-job-23] Extracting pkg-1.10.1: .......... done ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-AMORE-0.2.14_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building =========================================================================== =================================================== ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building => SHA256 Checksum OK for AMORE_0.2-14.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv2 GPLv3 accepted by the user ===> Fetching all distfiles required by R-cran-AMORE-0.2.14_3 for building ===> Extracting for R-cran-AMORE-0.2.14_3 => SHA256 Checksum OK for AMORE_0.2-14.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for R-cran-AMORE-0.2.14_3 =========================================================================== =================================================== ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - not found ===> Installing existing package /packages/All/R-3.4.1_4.txz [103i386-default-build-as-user-job-23] Installing R-3.4.1_4... [103i386-default-build-as-user-job-23] `-- Installing cairo-1.14.8_1,2... [103i386-default-build-as-user-job-23] | `-- Installing dri2proto-2.8... [103i386-default-build-as-user-job-23] | `-- Extracting dri2proto-2.8: .... done [103i386-default-build-as-user-job-23] | `-- Installing fontconfig-2.12.1,1... [103i386-default-build-as-user-job-23] | | `-- Installing expat-2.2.1... [103i386-default-build-as-user-job-23] | | `-- Extracting expat-2.2.1: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing freetype2-2.8... [103i386-default-build-as-user-job-23] | | `-- Extracting freetype2-2.8: .......... done [103i386-default-build-as-user-job-23] | `-- Extracting fontconfig-2.12.1,1: .......... done Running fc-cache to build fontconfig cache... /usr/local/share/fonts: skipping, no such directory /usr/local/lib/X11/fonts: skipping, no such directory /var/db/fontconfig: cleaning cache directory fc-cache: succeeded [103i386-default-build-as-user-job-23] | `-- Installing gettext-runtime-0.19.8.1_1... [103i386-default-build-as-user-job-23] | | `-- Installing indexinfo-0.2.6... [103i386-default-build-as-user-job-23] | | `-- Extracting indexinfo-0.2.6: .... done [103i386-default-build-as-user-job-23] | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [103i386-default-build-as-user-job-23] | `-- Installing glib-2.50.2_4,1... [103i386-default-build-as-user-job-23] | | `-- Installing libffi-3.2.1... [103i386-default-build-as-user-job-23] | | `-- Extracting libffi-3.2.1: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing libiconv-1.14_10... [103i386-default-build-as-user-job-23] | | `-- Extracting libiconv-1.14_10: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing pcre-8.40_1... [103i386-default-build-as-user-job-23] | | `-- Extracting pcre-8.40_1: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing perl5-5.24.2... [103i386-default-build-as-user-job-23] | | `-- Extracting perl5-5.24.2: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing python27-2.7.13_7... [103i386-default-build-as-user-job-23] | | `-- Installing readline-7.0.3... [103i386-default-build-as-user-job-23] | `-- Extracting libXt-1.1.5,1: .......... done [103i386-default-build-as-user-job-23] `-- Extracting libXmu-1.1.2_3,1: .......... done [103i386-default-build-as-user-job-23] `-- Installing pango-1.40.6... 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[103i386-default-build-as-user-job-23] | | `-- Installing mkfontdir-1.0.7... [103i386-default-build-as-user-job-23] | | | `-- Installing mkfontscale-1.1.2... [103i386-default-build-as-user-job-23] | | | `-- Installing libfontenc-1.1.3_1... [103i386-default-build-as-user-job-23] | | | `-- Extracting libfontenc-1.1.3_1: ......... done [103i386-default-build-as-user-job-23] | | | `-- Extracting mkfontscale-1.1.2: .. done [103i386-default-build-as-user-job-23] | | `-- Extracting mkfontdir-1.0.7: .. done [103i386-default-build-as-user-job-23] | | `-- Extracting dejavu-2.37: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing font-bh-ttf-1.0.3_3... [103i386-default-build-as-user-job-23] | | `-- Extracting font-bh-ttf-1.0.3_3: .......... done [103i386-default-build-as-user-job-23] | | `-- Installing font-misc-ethiopic-1.0.3_3... [103i386-default-build-as-user-job-23] | | `-- Extracting font-misc-ethiopic-1.0.3_3: ... done [103i386-default-build-as-user-job-23] | | `-- Installing font-misc-meltho-1.0.3_3... [103i386-default-build-as-user-job-23] | | `-- Extracting font-misc-meltho-1.0.3_3: .......... done [103i386-default-build-as-user-job-23] `-- Extracting pango-1.40.6: .......... done [103i386-default-build-as-user-job-23] `-- Installing tcl86-8.6.7... [103i386-default-build-as-user-job-23] `-- Extracting tcl86-8.6.7: .......... done [103i386-default-build-as-user-job-23] `-- Installing tk86-8.6.7... [103i386-default-build-as-user-job-23] `-- Extracting tk86-8.6.7: .......... done [103i386-default-build-as-user-job-23] `-- Installing wget-1.19.1_1... [103i386-default-build-as-user-job-23] `-- Extracting wget-1.19.1_1: .......... done [103i386-default-build-as-user-job-23] Extracting R-3.4.1_4: .......... done Message from freetype2-2.8: The 2.7.x series now uses the new subpixel hinting mode (V40 port's option) as the default, emulating a modern version of ClearType. This change inevitably leads to different rendering results, and you might change port's options to adapt it to your taste (or use the new "FREETYPE_PROPERTIES" environment variable). The environment variable "FREETYPE_PROPERTIES" can be used to control the driver properties. Example: FREETYPE_PROPERTIES=truetype:interpreter-version=35 \ cff:no-stem-darkening=1 \ autofitter:warping=1 This allows to select, say, the subpixel hinting mode at runtime for a given application. The controllable properties are listed in the section "Controlling FreeType Modules" in the reference's table of contents (/usr/local/share/doc/freetype2/reference/ft2-toc.html, if documentation was installed). Message from perl5-5.24.2: The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== Message from ca_root_nss-3.32: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from trousers-0.3.14_1: To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account Message from ghostscript9-agpl-base-9.16_5: Note: in order to use the script "dvipdf", dvips must be installed. This program is provided by another package print/tex-dvipsk. FAPIfontmap and FAPIcidfmap in /usr/local/share/ghostscript/9.16/Resource/Init have to be configured if you want to use FAPI feature. Message from dejavu-2.37: Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. Message from R-3.4.1_4: ======================================================================== On 11.1 and later, there is a problem downloading R packages when gfortran is chosen as the fortran compiler. Use either of these workarounds until a permanent solution is found. 1. If you are on an amd64 system, you can use flang as the fortran compiler. 2. If you choose gfortran as the fortran compiler, you can add options(download.file.method="wget") to ~/.Rprofile followed by a newline. Details: https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=221127 ======================================================================== ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - found ===> Returning to build of R-cran-AMORE-0.2.14_3 ===> R-cran-AMORE-0.2.14_3 depends on executable: gfortran5 - found ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/as - found =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for R-cran-AMORE-0.2.14_3 =========================================================================== =================================================== =========================================================================== =================================================== ===> R-cran-AMORE-0.2.14_3 depends on file: /usr/local/bin/R - found ===> R-cran-AMORE-0.2.14_3 depends on executable: gfortran5 - found =========================================================================== =================================================== ===> Staging for R-cran-AMORE-0.2.14_3 ===> Generating temporary packing list * installing *source* package 'AMORE' ... ** package 'AMORE' successfully unpacked and MD5 sums checked ** libs gmake[1]: Entering directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src' /usr/local/bin/clang40 -I/usr/local/lib/R/include -DNDEBUG -DLIBICONV_PLUG -I/usr/local/include -isystem /usr/local/include -fpic -O2 -pipe -DLIBICONV_PLUG -fstack-protector -isystem /usr/local/include -fno-strict-aliasing -c ADAPTgd.c -o ADAPTgd.o gmake[1]: /usr/local/bin/clang40: Command not found gmake[1]: *** [/usr/local/lib/R/etc/Makeconf:159: ADAPTgd.o] Error 127 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/R-cran-AMORE/work/AMORE/src' ERROR: compilation failed for package 'AMORE' * removing '/wrkdirs/usr/ports/science/R-cran-AMORE/work/stage/usr/local/lib/R/library/AMORE' *** Error code 1 Stop. make: stopped in /usr/ports/science/R-cran-AMORE