Skip site navigation (1)Skip section navigation (2)
Date:      Sun, 31 Mar 2019 06:27:33 GMT
From:      pkg-fallout@FreeBSD.org
To:        jwb@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-i386-default][science/afni] Failed for afni-2015.11.13_8 in build
Message-ID:  <201903310627.x2V6RXmf062050@beefy11.nyi.freebsd.org>

next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     jwb@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy11.nyi.freebsd.org/data/head-i386-default/p497233_s345723/logs/afni-2015.11.13_8.log
Build URL:      http://beefy11.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p497233_s345723
Log:

=>> Building science/afni
build started at Sun Mar 31 06:06:32 UTC 2019
port directory: /usr/ports/science/afni
package name: afni-2015.11.13_8
building for: FreeBSD head-i386-default-job-02 13.0-CURRENT FreeBSD 13.0-CURRENT 1300017 i386
maintained by: jwb@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/afni/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300009
Jail OSVERSION: 1300017
Job Id: 02




!!! Jail is newer than host. (Jail: 1300017, Host: 1300009) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



---Begin Environment---
SHELL=/bin/csh
UNAME_p=i386
UNAME_m=i386
OSVERSION=1300017
UNAME_v=FreeBSD 13.0-CURRENT 1300017
UNAME_r=13.0-CURRENT
BLOCKSIZE=K
MAIL=/var/mail/root
STATUS=1
HOME=/root
PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin
LOCALBASE=/usr/local
USER=root
LIBEXECPREFIX=/usr/local/libexec/poudriere
POUDRIERE_VERSION=3.2.8-3-g02cc9753
MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref
POUDRIERE_BUILD_TYPE=bulk
PACKAGE_BUILDING=yes
SAVED_TERM=
PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool
P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS
MASTERNAME=head-i386-default
SCRIPTPREFIX=/usr/local/share/poudriere
OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p
SCRIPTPATH=/usr/local/share/poudriere/bulk.sh
POUDRIEREPATH=/usr/local/bin/poudriere
---End Environment---

---Begin Poudriere Port Flags/Env---
PORT_FLAGS=
PKGENV=
FLAVOR=
DEPENDS_ARGS=
MAKE_ARGS=
---End Poudriere Port Flags/Env---

---Begin OPTIONS List---
===> The following configuration options are available for afni-2015.11.13_8:
     DOCS=on: Build and/or install documentation
===> Use 'make config' to modify these settings
---End OPTIONS List---

--MAINTAINER--
jwb@FreeBSD.org
--End MAINTAINER--

--CONFIGURE_ARGS--

--End CONFIGURE_ARGS--

--CONFIGURE_ENV--
MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl  PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8
--End CONFIGURE_ENV--

--MAKE_ENV--
CC="cc" R_SHARE_DIR=/usr/local/lib/R/share MOTIFLIB="-L/usr/local/lib -lXm -lXp" PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/science/afni/work  XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/afni/work  HOME=/wrkdirs/usr/ports/science/afni/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/afni/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LANG=en_US.UTF-8 LC_ALL=en_US.UTF-8 PREFIX=/usr/local  LOCALBASE=/usr/local  CC="cc" CFLAGS="-O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing "  CPP="cpp" CPPFLAGS="-DLIBICONV_PLUG"  LDFLAGS=" -fstack-protector " LIBS=""  CXX="c++" CXXFLAGS="-O2 -pipe -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -DLIBICONV_PLUG "  MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install  -s -m 555"  BSD_INSTALL_LIB="install  -s -m 0644"  BSD_INSTALL_SCRIPT="install  -m 555"  BSD_INSTALL_DATA="install  -m 0644"  BSD_INSTALL_MAN=
 "install  -m 444"
--End MAKE_ENV--

--PLIST_SUB--
PORTDOCS="" PYTHON_INCLUDEDIR=include/python2.7  PYTHON_LIBDIR=lib/python2.7  PYTHON_PLATFORM=freebsd13  PYTHON_PYOEXTENSION=pyo  PYTHON_SITELIBDIR=lib/python2.7/site-packages  PYTHON_SUFFIX=27  PYTHON_VER=2.7  PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " GTK2_VERSION="2.10.0"  GTK3_VERSION="3.0.0" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local  RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.1  PERL_VER=5.28  PERL5_MAN1=lib/perl5/site_perl/man/man1  PERL5_MAN3=lib/perl5/site_perl/man/man3  SITE_PERL=lib/perl5/site_perl  SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/afni"  EXAMPLESDIR="share/examples/afni"  DATADIR="share/afni"  WWWDIR="www/afni"  ETCDIR="etc/afni"
--End PLIST_SUB--

--SUB_LIST--
PREFIX=/usr/local LOCALBASE=/usr/local  DATADIR=/usr/local/share/afni DOCSDIR=/usr/local/share/doc/afni EXAMPLESDIR=/usr/local/share/examples/afni  WWWDIR=/usr/local/www/afni ETCDIR=/usr/local/etc/afni
--End SUB_LIST--

---Begin make.conf---
USE_PACKAGE_DEPENDS=yes
BATCH=yes
WRKDIRPREFIX=/wrkdirs
PORTSDIR=/usr/ports
PACKAGES=/packages
DISTDIR=/distfiles
PACKAGE_BUILDING=yes
PACKAGE_BUILDING_FLAVORS=yes
MACHINE=i386
MACHINE_ARCH=i386
ARCH=${MACHINE_ARCH}
#### /usr/local/etc/poudriere.d/make.conf ####
# XXX: We really need this but cannot use it while 'make checksum' does not
# try the next mirror on checksum failure.  It currently retries the same
# failed mirror and then fails rather then trying another.  It *does*
# try the next if the size is mismatched though.
#MASTER_SITE_FREEBSD=yes
# Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs
MAKE_JOBS_NUMBER=2

# stable/10 includes src.conf too late but make.conf is in sys.mk
.if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*}
# Disable build of llib now that head no longer has lint(1)
LINT=	true
.endif
#### /usr/ports/Mk/Scripts/ports_env.sh ####
_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_ALTCCVERSION_921dbbb2=none
_CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o"
CC_OUTPUT_921dbbb2_58173849=yes
CC_OUTPUT_921dbbb2_9bdba57c=yes
CC_OUTPUT_921dbbb2_6a4fe7f5=yes
CC_OUTPUT_921dbbb2_6bcac02b=yes
CC_OUTPUT_921dbbb2_67d20829=yes
CC_OUTPUT_921dbbb2_bfa62e83=yes
CC_OUTPUT_921dbbb2_f0b4d593=yes
CC_OUTPUT_921dbbb2_308abb44=yes
CC_OUTPUT_921dbbb2_f00456e5=yes
CC_OUTPUT_921dbbb2_65ad290d=yes
CC_OUTPUT_921dbbb2_f2776b26=yes
CC_OUTPUT_921dbbb2_b2657cc3=yes
CC_OUTPUT_921dbbb2_380987f7=yes
CC_OUTPUT_921dbbb2_160933ec=yes
CC_OUTPUT_921dbbb2_fb62803b=yes
_OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin
_OBJC_ALTCCVERSION_921dbbb2=none
ARCH=i386
OPSYS=FreeBSD
_OSRELEASE=13.0-CURRENT
OSREL=13.0
OSVERSION=1300017
PYTHONBASE=/usr/local
CONFIGURE_MAX_CMD_LEN=262144
HAVE_PORTS_ENV=1
#### Misc Poudriere ####
GID=0
UID=0
DISABLE_MAKE_JOBS=poudriere
---End make.conf---
--Resource limits--
cpu time               (seconds, -t)  unlimited
file size           (512-blocks, -f)  unlimited
data seg size           (kbytes, -d)  524288
stack size              (kbytes, -s)  65536
core file size      (512-blocks, -c)  unlimited
max memory size         (kbytes, -m)  unlimited
locked memory           (kbytes, -l)  unlimited
max user processes              (-u)  89999
open files                      (-n)  1024
virtual mem size        (kbytes, -v)  unlimited
swap limit              (kbytes, -w)  unlimited
socket buffer size       (bytes, -b)  unlimited
pseudo-terminals                (-p)  unlimited
kqueues                         (-k)  unlimited
umtx shared locks               (-o)  unlimited
--End resource limits--
=======================<phase: check-sanity   >============================
===>  License GPLv2 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-i386-default-job-02] Installing pkg-1.10.5_5...
[head-i386-default-job-02] Extracting pkg-1.10.5_5: .......... done
===>   afni-2015.11.13_8 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of afni-2015.11.13_8
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_8 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_8 for building
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License GPLv2 accepted by the user
===> Fetching all distfiles required by afni-2015.11.13_8 for building
===>  Extracting for afni-2015.11.13_8
=> SHA256 Checksum OK for afni-2015.11.13.tar.xz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
<snip>
   if( (Fname_input == NULL) ) {
        ~~~~~~~~~~~~^~~~~~~
1dDW_Grad_o_Mat.c:458:21: note: remove extraneous parentheses around the comparison to silence this warning
   if( (Fname_input == NULL) ) {
       ~            ^      ~
1dDW_Grad_o_Mat.c:458:21: note: use '=' to turn this equality comparison into an assignment
   if( (Fname_input == NULL) ) {
                    ^~
                    =
1dDW_Grad_o_Mat.c:463:22: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
   if( (Fname_output == NULL) ) {
        ~~~~~~~~~~~~~^~~~~~~
1dDW_Grad_o_Mat.c:463:22: note: remove extraneous parentheses around the comparison to silence this warning
   if( (Fname_output == NULL) ) {
       ~             ^      ~
1dDW_Grad_o_Mat.c:463:22: note: use '=' to turn this equality comparison into an assignment
   if( (Fname_output == NULL) ) {
                     ^~
                     =
2 warnings generated.
/bin/rm -f 1dDW_Grad_o_Mat
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 1dDW_Grad_o_Mat 1dDW_Grad_o_Mat.o  ../parser.o ../parser_int.o \
	-I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib   \
	-s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \
      -lgsl -lgslcblas -lm
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA   -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -c 3dEigsToDT.c 
3dEigsToDT.c:376:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
   if( (mskd2 == NULL)) { 
        ~~~~~~^~~~~~~
3dEigsToDT.c:376:15: note: remove extraneous parentheses around the comparison to silence this warning
   if( (mskd2 == NULL)) { 
       ~      ^      ~
3dEigsToDT.c:376:15: note: use '=' to turn this equality comparison into an assignment
   if( (mskd2 == NULL)) { 
              ^~
              =
3dEigsToDT.c:401:14: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
         if( fabs(THD_get_voxel(EVALS[0],k,0) > EPS_V) )
             ^
3dEigsToDT.c:401:14: note: use function 'abs' instead
         if( fabs(THD_get_voxel(EVALS[0],k,0) > EPS_V) )
             ^~~~
             abs
2 warnings generated.
/bin/rm -f 3dEigsToDT
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dEigsToDT 3dEigsToDT.o  ../parser.o ../parser_int.o \
	-I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib   \
	-s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \
      -lgsl -lgslcblas -lm
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA   -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -c 3dDTtoNoisyDWI.c 
3dDTtoNoisyDWI.c:300:15: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
   if( (mskd2 == NULL)) { 
        ~~~~~~^~~~~~~
3dDTtoNoisyDWI.c:300:15: note: remove extraneous parentheses around the comparison to silence this warning
   if( (mskd2 == NULL)) { 
       ~      ^      ~
3dDTtoNoisyDWI.c:300:15: note: use '=' to turn this equality comparison into an assignment
   if( (mskd2 == NULL)) { 
              ^~
              =
3dDTtoNoisyDWI.c:324:14: warning: using floating point absolute value function 'fabs' when argument is of integer type [-Wabsolute-value]
         if( fabs(THD_get_voxel(DTS,k,0) > EPS_V) )
             ^
3dDTtoNoisyDWI.c:324:14: note: use function 'abs' instead
         if( fabs(THD_get_voxel(DTS,k,0) > EPS_V) )
             ^~~~
             abs
2 warnings generated.
/bin/rm -f 3dDTtoNoisyDWI
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dDTtoNoisyDWI 3dDTtoNoisyDWI.o  ../parser.o ../parser_int.o \
	-I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib   \
	-s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \
      -lgsl -lgslcblas -lm
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA   -I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -c 3dTORTOISEtoHere.c 
/bin/rm -f 3dTORTOISEtoHere
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -o 3dTORTOISEtoHere 3dTORTOISEtoHere.o  ../parser.o ../parser_int.o \
	-I. -I/usr/local/include -I/usr/local/include -I../nifti/nifti2 -I../nifti/niftilib -I../nifti/nifticdf -I../nifti/znzlib -I../3DEdge/src -I../rickr -I../ -I../niml/ -Igts/src -I../SUMA/  -L.. -s -L. -L/usr/local/lib -L/usr/lib -L/usr/local/lib   \
	-s -L. -L/usr/local/lib libtracktools.a -lmri -lf2c -lXm -lXp -lXpm -lXext -lXmu -lXt -lX11 -lm -lz -L/usr/local/lib -lexpat \
      -lgsl -lgslcblas -lm
gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13/ptaylor'
/bin/rm -f plug_clust.so
cc -O2 -pipe  -DLIBICONV_PLUG -fstack-protector -fno-strict-aliasing  -Wno-return-type -Wno-switch -DFreeBSD -DNO_GAMMA -DUSE_TRACING -DHAVE_XDBE -DSUMA_MOTIF_GLXAREA -c plug_clust.c -I. -I/usr/local/include -Inifti/nifti2 -Inifti/niftilib -Inifti/nifticdf -Inifti/znzlib -I3DEdge/src -Irickr -DHAVE_ZLIB -DHAVE_GIFTI
In file included from plug_clust.c:7:
In file included from ./afni.h:1576:
./afni_setup.h:7:9: warning: '_AFNI_SETUP_HEADER_' is used as a header guard here, followed by #define of a different macro [-Wheader-guard]
#ifndef _AFNI_SETUP_HEADER_
        ^~~~~~~~~~~~~~~~~~~
./afni_setup.h:8:9: note: '_AFNI_SETUP_HEADER' is defined here; did you mean '_AFNI_SETUP_HEADER_'?
#define _AFNI_SETUP_HEADER
        ^~~~~~~~~~~~~~~~~~
        _AFNI_SETUP_HEADER_
1 warning generated.
ld -shared -o plug_clust.so plug_clust.o
ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.11 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against local symbol in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.10 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.9 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: relocation R_386_PC32 cannot be used against symbol new_PLUGIN_interface_1999; recompile with -fPIC
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.10 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: relocation R_386_PC32 cannot be used against symbol PLUTO_add_hint; recompile with -fPIC
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.12 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: relocation R_386_PC32 cannot be used against symbol PLUTO_set_sequence; recompile with -fPIC
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: can't create dynamic relocation R_386_32 against symbol: .L.str.13 in readonly segment; recompile object files with -fPIC or pass '-Wl,-z,notext' to allow text relocations in the output
>>> defined in plug_clust.o
>>> referenced by plug_clust.c
>>>               plug_clust.o:(PLUGIN_init)

ld: error: too many errors emitted, stopping now (use -error-limit=0 to see all errors)
gmake[1]: *** [Makefile.INCLUDE:2376: plug_clust.so] Error 1
gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/afni/work/afni-2015.11.13'
*** Error code 1

Stop.
make: stopped in /usr/ports/science/afni



Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201903310627.x2V6RXmf062050>