Date: Mon, 10 Aug 2009 09:54:59 GMT From: Wen Heping <wenheping@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/137625: [Maintainer Update]biology/paml:update to 4.3 Message-ID: <200908100954.n7A9sxnE016623@www.freebsd.org> Resent-Message-ID: <200908101000.n7AA0DhM070382@freefall.freebsd.org>
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>Number: 137625 >Category: ports >Synopsis: [Maintainer Update]biology/paml:update to 4.3 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: maintainer-update >Submitter-Id: current-users >Arrival-Date: Mon Aug 10 10:00:12 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-Current >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: update to 4.3 from 4.2b >How-To-Repeat: >Fix: Patch attached with submission follows: --- Makefile.orig 2009-08-10 17:04:00.000000000 +0800 +++ Makefile 2009-08-10 17:11:05.000000000 +0800 @@ -6,7 +6,7 @@ # PORTNAME= paml -PORTVERSION= 4.2b +PORTVERSION= 4.3 CATEGORIES= biology MASTER_SITES= http://abacus.gene.ucl.ac.uk/software/ DISTNAME= ${PORTNAME}${PORTVERSION} @@ -15,7 +15,7 @@ COMMENT= Phylogenetic Analysis by Maximum Likelihood (PAML) USE_GMAKE= YES -WRKSRC= ${WRKDIR}/${PORTNAME}42/src +WRKSRC= ${WRKDIR}/${PORTNAME}43/src MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS}" BINARIES= baseml basemlg chi2 codeml evolver pamp yn00 @@ -28,7 +28,7 @@ .if !defined(NOPORTDOCS) ${MKDIR} ${DOCSDIR} .for f in ${DOC_FILES} - ${INSTALL_DATA} ${WRKDIR}/${PORTNAME}42/doc/${f} ${DOCSDIR} + ${INSTALL_DATA} ${WRKDIR}/${PORTNAME}43/doc/${f} ${DOCSDIR} .endfor .endif --- distinfo.orig 2009-08-10 17:04:07.000000000 +0800 +++ distinfo 2009-08-10 17:05:40.000000000 +0800 @@ -1,3 +1,3 @@ -MD5 (paml4.2b.tar.gz) = 9f1f5842534aeeb8101d402abaa1fee1 -SHA256 (paml4.2b.tar.gz) = fc11d44cfb31d303ec619156649dd2f264de743c64ebe21263cdffb09064904a -SIZE (paml4.2b.tar.gz) = 2637368 +MD5 (paml4.3.tar.gz) = 67ef796d0a61d959192c548043496018 +SHA256 (paml4.3.tar.gz) = eeed8c73e6ef468663dc77c8bb7b47e41358a2efca09da918c584c3009931fc4 +SIZE (paml4.3.tar.gz) = 2811793 >Release-Note: >Audit-Trail: >Unformatted:
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