From owner-freebsd-pkg-fallout@freebsd.org Thu Nov 3 19:14:47 2016 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 6167FC2D332 for ; Thu, 3 Nov 2016 19:14:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 4FCD61F07 for ; Thu, 3 Nov 2016 19:14:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id 4C3F6C2D331; Thu, 3 Nov 2016 19:14:47 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 4BDE4C2D330 for ; Thu, 3 Nov 2016 19:14:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy14.nyi.freebsd.org (beefy14.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e1]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 0C6CB1F06 for ; Thu, 3 Nov 2016 19:14:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy14.nyi.freebsd.org (localhost [127.0.0.1]) by beefy14.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id uA3JEk26093852 for ; Thu, 3 Nov 2016 19:14:46 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy14.nyi.freebsd.org (8.15.2/8.15.2/Submit) id uA3JEkgP093841; Thu, 3 Nov 2016 19:14:46 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 3 Nov 2016 19:14:46 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201611031914.uA3JEkgP093841@beefy14.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 110mips-quarterly][biology/muscle] Failed for muscle-3.8.31 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 03 Nov 2016 19:14:47 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mzaki@m.u-tokyo.ac.jp Last committer: swills@FreeBSD.org Ident: $FreeBSD: branches/2016Q4/biology/muscle/Makefile 403676 2015-12-13 16:07:27Z swills $ Log URL: http://beefy14.nyi.freebsd.org/data/110mips-quarterly/425058/logs/muscle-3.8.31.log Build URL: http://beefy14.nyi.freebsd.org/build.html?mastername=110mips-quarterly&build=425058 Log: ====>> Building biology/muscle build started at Thu Nov 3 19:14:25 UTC 2016 port directory: /usr/ports/biology/muscle building for: FreeBSD 110mips-quarterly-job-03 11.0-RELEASE-p2 FreeBSD 11.0-RELEASE-p2 r307935 mips maintained by: mzaki@m.u-tokyo.ac.jp Makefile ident: $FreeBSD: branches/2016Q4/biology/muscle/Makefile 403676 2015-12-13 16:07:27Z swills $ Poudriere version: 3.1.14 Host OSVERSION: 1200010 Jail OSVERSION: 1100122 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips UNAME_m=mips ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p2 r307935 UNAME_r=11.0-RELEASE-p2 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=mips SAVED_TERM=screen MASTERMNT=/usr/local/poudriere/data/.m/110mips-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=muscle-3.8.31 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p2 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110mips-quarterly/ref/.p/pool MASTERNAME=110mips-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/muscle/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/muscle/work HOME=/wrkdirs/usr/ports/biology/muscle/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/muscle" EXAMPLESDIR="share/examples/muscle" DATADIR="share/muscle" WWWDIR="www/muscle" ETCDIR="etc/muscle" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/muscle DOCSDIR=/usr/local/share/doc/muscle EXAMPLESDIR=/usr/local/share/examples/muscle WWWDIR=/usr/local/www/muscle ETCDIR=/usr/local/etc/muscle --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=mips MACHINE_ARCH=mips ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =================================================== =========================================================================== =================================================== ===> muscle-3.8.31 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.7_3.txz [110mips-quarterly-job-03] Installing pkg-1.8.7_3... [110mips-quarterly-job-03] Extracting pkg-1.8.7_3: .......... done ===> muscle-3.8.31 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of muscle-3.8.31 =========================================================================== =================================================== =========================================================================== =================================================== => muscle3.8.31_src.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch http://www.drive5.com/muscle/downloads3.8.31/muscle3.8.31_src.tar.gz muscle3.8.31_src.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by muscle-3.8.31 for building =========================================================================== =================================================== ===> Fetching all distfiles required by muscle-3.8.31 for building => SHA256 Checksum OK for muscle3.8.31_src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by muscle-3.8.31 for building ===> Extracting for muscle-3.8.31 => SHA256 Checksum OK for muscle3.8.31_src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for muscle-3.8.31 ===> Converting DOS text files to UNIX text files ===> Applying FreeBSD patches for muscle-3.8.31 =========================================================================== =================================================== =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for muscle-3.8.31 =========================================================================== =================================================== ===> Building for muscle-3.8.31 chmod +x ./mk ./mk c++: tracebackopt.o: No such file or directory c++: tracebacksw.o: No such file or directory c++: treefrommsa.o: No such file or directory c++: typetostr.o: No such file or directory c++: upgma2.o: No such file or directory c++: usage.o: No such file or directory c++: validateids.o: No such file or directory c++: vtml2.o: No such file or directory c++: writescorefile.o: No such file or directory c++: No input files specified ls: muscle: No such file or directory sum: muscle: No such file or directory *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/muscle/work/muscle3.8.31/src *** Error code 1 Stop. make: stopped in /usr/ports/biology/muscle