From owner-cvs-ports@FreeBSD.ORG Thu May 20 10:02:04 2010 Return-Path: Delivered-To: cvs-ports@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 819931065703; Thu, 20 May 2010 10:02:04 +0000 (UTC) (envelope-from makc@issp.ac.ru) Received: from mail.issp.ac.ru (mail.issp.ac.ru [77.236.34.3]) by mx1.freebsd.org (Postfix) with ESMTP id D0DB88FC15; Thu, 20 May 2010 10:02:03 +0000 (UTC) Received: from lqc.issp.ac.ru [77.236.34.156:19940] (HELO/EHLO lqc.issp.ac.ru, authenticated with PLAIN) by mail.issp.ac.ru with ESMTP/inet id o4KA1HZh090205 (using TLSv1/SSLv3, with cipher DHE-RSA-AES256-SHA (256 bits), verified NO) Thu, 20 May 2010 14:01:18 +0400 (MSD) From: Max Brazhnikov Organization: ISSP RAS To: Wen Heping , g.veniamin@googlemail.com Date: Thu, 20 May 2010 14:02:00 +0400 User-Agent: KMail/1.13.3 (FreeBSD/8.0-STABLE; KDE/4.4.3; i386; ; ) References: <201005200943.o4K9hEAD000151@repoman.freebsd.org> In-Reply-To: <201005200943.o4K9hEAD000151@repoman.freebsd.org> MIME-Version: 1.0 Content-Type: Text/Plain; charset="us-ascii" Content-Transfer-Encoding: 7bit Message-Id: <201005201402.01345.makc@issp.ac.ru> X-Greylist: Sender succeeded SMTP AUTH authentication, not delayed by milter-greylist-3.0 (mail.issp.ac.ru [77.236.34.3]); Thu, 20 May 2010 14:01:18 +0400 (MSD) Cc: cvs-ports@freebsd.org, cvs-all@freebsd.org, ports-committers@freebsd.org Subject: Re: cvs commit: ports/science Makefile ports/science/massxpert Makefile distinfo pkg-descr pkg-plist X-BeenThere: cvs-ports@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: CVS commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 20 May 2010 10:02:04 -0000 USE_LDCONFIG is excessive here, since no shared libraries are installed. man pages shouldn't be recorded in plist Max On Thu, 20 May 2010 09:43:14 +0000 (UTC), Wen Heping wrote: > wen 2010-05-20 09:43:14 UTC > > FreeBSD ports repository > > Modified files: > science Makefile > Added files: > science/massxpert Makefile distinfo pkg-descr pkg-plist > Log: > The massXpert project aims at providing (bio)chemists with a software > package allowing the following: > > * User-specific atom definitions and polymer chemistry definitions; > * Powerful sequence editing with user-defined glyphs for each monomer > and monomer chemical modification. Multi-region selections; > * Polymer sequence chemical/enzymatic cleavage; > * Intramolecular cross-linking, like disulfide bonds with total > resolution of the peptides generated upon enzymatic cleavage; > * Gas-phase fragmentation of oligomers; > * Mass-to-charge ratio calculations with inline change of ionization > agent; * Calculation of net electrical charge and of isoelectric point > (even by taking into account monomer modifications if polymer is a > protein); * Simulation of isotopic patterns for any chemical formula and z > charge; * A number of plugins allow 1) translation of the sequence from > one format to another (using a dictionary, like between the 1-letter code > and the 3-letter code of proteins) 2) conversion of number format > according to any localized number format 3) sort mass lists. > > PR: ports/146564 > Submitted by: Gvozdikov Veniamin > > Revision Changes Path > 1.189 +1 -0 ports/science/Makefile > 1.1 +28 -0 ports/science/massxpert/Makefile (new) > 1.1 +3 -0 ports/science/massxpert/distinfo (new) > 1.1 +20 -0 ports/science/massxpert/pkg-descr (new) > 1.1 +225 -0 ports/science/massxpert/pkg-plist (new)