From owner-freebsd-ports-bugs@FreeBSD.ORG Wed Apr 1 14:50:02 2009 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 28797106564A for ; Wed, 1 Apr 2009 14:50:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 038C48FC22 for ; Wed, 1 Apr 2009 14:50:02 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.3/8.14.3) with ESMTP id n31Eo1Tv022140 for ; Wed, 1 Apr 2009 14:50:01 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.3/8.14.3/Submit) id n31Eo1Oi022139; Wed, 1 Apr 2009 14:50:01 GMT (envelope-from gnats) Resent-Date: Wed, 1 Apr 2009 14:50:01 GMT Resent-Message-Id: <200904011450.n31Eo1Oi022139@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen Heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 8A87F106564A for ; Wed, 1 Apr 2009 14:48:12 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id 786CE8FC13 for ; Wed, 1 Apr 2009 14:48:12 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.3/8.14.3) with ESMTP id n31EmCQA033848 for ; Wed, 1 Apr 2009 14:48:12 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.3/8.14.3/Submit) id n31EmBJl033847; Wed, 1 Apr 2009 14:48:11 GMT (envelope-from nobody) Message-Id: <200904011448.n31EmBJl033847@www.freebsd.org> Date: Wed, 1 Apr 2009 14:48:11 GMT From: Wen Heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/133273: [NEW PORT]biology/p5-Bio-Glite:An Perl Interface to G-language X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 01 Apr 2009 14:50:02 -0000 >Number: 133273 >Category: ports >Synopsis: [NEW PORT]biology/p5-Bio-Glite:An Perl Interface to G-language >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Wed Apr 01 14:50:01 UTC 2009 >Closed-Date: >Last-Modified: >Originator: Wen Heping >Release: FreeBSD 8.0-CURRENT >Organization: ChangAn Middle School >Environment: FreeBSD fb8.wenjing.com 8.0-CURRENT FreeBSD 8.0-CURRENT #0: Sun Mar 22 22:12:06 CST 2009 root@fb8.wenjing.com:/usr/obj/usr/src/sys/GENERIC i386 >Description: Bio::Glite is an interface to G-language Genome Analysis Environment through its REST web service (http://www.g-language.org). This module allows almost everything G-language GAE can do, without installing all necessary tookits and modules. Advantage of this module over the standard installation of G-language GAE package is: 1. Easy installation from CPAN 2. Extremely light-weight (less than 1000 lines of code) 3. Does not require much CPU/RAM (all calculation is done on the cloud) Disadvantages includes: 1. Slower analysis speed 2. Internet connection is required 3. No other software interfaces such as the G-language Shell WWW: http://search.cpan.org/dist/Bio-Glite/ >How-To-Repeat: >Fix: Patch attached with submission follows: # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # p5-Bio-Glite # p5-Bio-Glite/Makefile # p5-Bio-Glite/distinfo # p5-Bio-Glite/pkg-descr # p5-Bio-Glite/pkg-plist # echo c - p5-Bio-Glite mkdir -p p5-Bio-Glite > /dev/null 2>&1 echo x - p5-Bio-Glite/Makefile sed 's/^X//' >p5-Bio-Glite/Makefile << '7d4ec605039b42bbd2f2e7c7f02b8b27' X# New ports collection makefile for: p5-Bio-Glite X# Date created: 1st April, 2009 X# Whom: Wen Heping X# X# $FreeBSD$ X# X XPORTNAME= Bio-Glite XPORTVERSION= 0.10 XCATEGORIES= biology perl5 XMASTER_SITES= CPAN XPKGNAMEPREFIX= p5- X XMAINTAINER= wenheping@gmail.com XCOMMENT= An Perl Interface to G-language X XBUILD_DEPENDS= p5-Data-Dumper>=2.121:${PORTSDIR}/devel/p5-Data-Dumper \ X p5-libwww>=5:${PORTSDIR}/www/p5-libwww XRUN_DEPENDS= ${BUILD_DEPENDS} X XPERL_CONFIGURE= YES X XMAN3= Bio::Glite.3 X X.include 7d4ec605039b42bbd2f2e7c7f02b8b27 echo x - p5-Bio-Glite/distinfo sed 's/^X//' >p5-Bio-Glite/distinfo << '874310c657e59fd351157696919512b2' XMD5 (Bio-Glite-0.10.tar.gz) = 54a973b4d7332fb9eca63e8b8a712161 XSHA256 (Bio-Glite-0.10.tar.gz) = f747af67efe6feb6daca599034624510f75c6f73f1509f3eef3836f2030dfc71 XSIZE (Bio-Glite-0.10.tar.gz) = 25801 874310c657e59fd351157696919512b2 echo x - p5-Bio-Glite/pkg-descr sed 's/^X//' >p5-Bio-Glite/pkg-descr << '0d62cd5c273dba69ad3f1f933fec6118' XBio::Glite is an interface to G-language Genome Analysis Environment Xthrough its REST web service (http://www.g-language.org). This module Xallows almost everything G-language GAE can do, without installing Xall necessary tookits and modules. X XAdvantage of this module over the standard installation of XG-language GAE package is: X 1. Easy installation from CPAN X 2. Extremely light-weight (less than 1000 lines of code) X 3. Does not require much CPU/RAM (all calculation is done on Xthe cloud) X XDisadvantages includes: X 1. Slower analysis speed X 2. Internet connection is required X 3. No other software interfaces such as the G-language Shell X XWWW: http://search.cpan.org/dist/Bio-Glite/ 0d62cd5c273dba69ad3f1f933fec6118 echo x - p5-Bio-Glite/pkg-plist sed 's/^X//' >p5-Bio-Glite/pkg-plist << 'be57d8e45296f0cb3f4a9f82806e8dc8' X%%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite/.packlist X%%SITE_PERL%%/Bio/Glite.pm X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio/Glite X@dirrmtry %%SITE_PERL%%/%%PERL_ARCH%%/auto/Bio X@dirrmtry %%SITE_PERL%%/Bio be57d8e45296f0cb3f4a9f82806e8dc8 exit >Release-Note: >Audit-Trail: >Unformatted: