From owner-freebsd-python@FreeBSD.ORG Sun Jul 28 16:52:03 2013 Return-Path: Delivered-To: freebsd-python@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [8.8.178.115]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTP id 9DE3C88A; Sun, 28 Jul 2013 16:52:03 +0000 (UTC) (envelope-from john@saltant.com) Received: from homiemail-a26.g.dreamhost.com (caiajhbdccah.dreamhost.com [208.97.132.207]) by mx1.freebsd.org (Postfix) with ESMTP id 6348D21DE; Sun, 28 Jul 2013 16:52:02 +0000 (UTC) Received: from homiemail-a26.g.dreamhost.com (localhost [127.0.0.1]) by homiemail-a26.g.dreamhost.com (Postfix) with ESMTP id C9B3DB805B; Sun, 28 Jul 2013 09:51:56 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha1; c=relaxed; d=saltant.com; h=message-id :date:from:mime-version:to:cc:subject:references:in-reply-to: content-type; s=saltant.com; bh=hmXjrxw2jexZV/j2FRZsyoNPjQw=; b= oF9WRFx+H9H1YHgT4r0S08Z1wU49BjG8e56O5twOKNqJY5tSkLAcWFzytWecKQRB 1VCUqyU2MUDZzxnYGopH49cHBHWwUBImNoYQWULPAxl8zfoHDG6fNNHukhiUKLFK A/ate7BwRbGlI9wnZVSVA0O5A/sPh9zgCDP5OzxYYyM= Received: from omnific.local (y.saltant.net [96.227.187.16]) (using TLSv1 with cipher DHE-RSA-AES256-SHA (256/256 bits)) (No client certificate requested) (Authenticated sender: john@saltant.com) by homiemail-a26.g.dreamhost.com (Postfix) with ESMTPSA id 65E68B8058; Sun, 28 Jul 2013 09:51:56 -0700 (PDT) Message-ID: <51F54C27.6080806@saltant.com> Date: Sun, 28 Jul 2013 12:51:51 -0400 From: "John W. O'Brien" Organization: Saltant Solutions User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10.8; rv:17.0) Gecko/20130620 Thunderbird/17.0.7 MIME-Version: 1.0 To: bug-followup@FreeBSD.org, wen@freebsd.org Subject: Re: ports/180889: [MAINTAINER] math/py-pandas: Update to 0.12.0 References: <201307271320.r6RDK8hH047052@freefall.freebsd.org> <51F3D86D.6080808@saltant.com> In-Reply-To: <51F3D86D.6080808@saltant.com> X-Enigmail-Version: 1.5.2 Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="93J1Ne9G7QAQMFJqlPhNgi4gf6rHmu8io" Cc: freebsd-python@FreeBSD.org X-BeenThere: freebsd-python@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: FreeBSD-specific Python issues List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 28 Jul 2013 16:52:03 -0000 This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --93J1Ne9G7QAQMFJqlPhNgi4gf6rHmu8io Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: quoted-printable On 7/27/13 10:25 AM, John W. O'Brien wrote: [...] > - test_pytables_native_read (pandas.io.tests.test_pytables.TestHDFStore= ) >=20 > This is somewhat more concerning, but it may be a problem with the > devel/py-tables soft dependency. Yes, pandas appears to be blameless in this case as demonstrated by the tables test error include below. wen@, Would you like me to open a PR against devel/py-tables? For reference, see the pandas test error noted above in any of these build lo= gs: https://redports.org/buildarchive/20130727114400-47308/ % python -m unittest \ tables.tests.test_basics.CheckFileTestCase.test04_openGenericHDF5File E =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D= =3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D=3D ERROR: None (tables.tests.test_basics.CheckFileTestCase) ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/local/lib/python2.7/site-packages/tables/tests/common.py", line 259, in newmethod return oldmethod(self, *args, **kwargs) File "/usr/local/lib/python2.7/site-packages/tables/tests/test_basics.py", line 1616, in test04_openGenericHDF5File ui =3D fileh.getNode(columns, "pressure", classname=3D"Array") File "/usr/local/lib/python2.7/site-packages/tables/file.py", line 1112, in getNode node =3D self._getNode(nodePath) File "/usr/local/lib/python2.7/site-packages/tables/file.py", line 1057, in _getNode node =3D self.root._g_loadChild(nodePath) File "/usr/local/lib/python2.7/site-packages/tables/group.py", line 1131, in _g_loadChild childClass =3D self._g_getChildLeafClass(childName, warn=3DTrue) File "/usr/local/lib/python2.7/site-packages/tables/group.py", line 291, in _g_getChildLeafClass childCID =3D self._g_getLChildAttr(childName, 'CLASS') File "hdf5Extension.pyx", line 708, in tables.hdf5Extension.Group._g_getLChildAttr (tables/hdf5Extension.c:6793)= HDF5ExtError: HDF5 error back trace File "H5D.c", line 345, in H5Dopen2 can't open dataset File "H5Dint.c", line 1132, in H5D_open not found File "H5Dint.c", line 1222, in H5D_open_oid unable to load type info from dataset header File "H5Omessage.c", line 484, in H5O_msg_read unable to read object header message File "H5Omessage.c", line 545, in H5O_msg_read_oh unable to decode message File "./H5Oshared.h", line 85, in H5O_dtype_shared_decode unable to decode native message File "H5Odtype.c", line 1105, in H5O_dtype_decode can't decode type File "H5Odtype.c", line 550, in H5O_dtype_decode_helper incorrect array datatype version End of HDF5 error back trace Non-existing node ``/columns/pressure`` under ``/`` ---------------------------------------------------------------------- Ran 1 test in 0.006s FAILED (errors=3D1) Closing remaining open files: /usr/local/lib/python2.7/site-packages/tables/tests/ex-noattr.h5... done --93J1Ne9G7QAQMFJqlPhNgi4gf6rHmu8io Content-Type: application/pgp-signature; name="signature.asc" Content-Description: OpenPGP digital signature Content-Disposition: attachment; filename="signature.asc" -----BEGIN PGP SIGNATURE----- Version: GnuPG/MacGPG2 v2.0.19 (Darwin) Comment: GPGTools - http://gpgtools.org Comment: Using GnuPG with Thunderbird - http://www.enigmail.net/ iQEcBAEBCgAGBQJR9UwrAAoJEBRzAKlhyP/F2YcH/0lMmqvtWjcCwuZ4CVEcpfrH P6igVsM+aE3ReT6QTOuH44BdOsDBdkIR7yrXx+deBTF9o98BW61fi8L2GKBkb2rR uF8knmvmB/DSeOk9iF2CiWqmab6g/O2kYbGkq4PJgt/+BqgG/nQZ0/VK36SRH+7L ZewE7Vbu7tshXakl0GkmBUksf8Tu0L3/eHn/F67Bob1cDxS2jVkWT+VDp5m21UV3 E/ket6INqhZ8mU8j0MojcIyWYVgxaoNUy9fzl/tZPFFW4juyvzStEPp8smXsO+A/ LjYJDk29EIShJUD2EUp8sGT4SeLvm2tzCZR8KtVKxnsZDH1TkpRcGpU5uZFIDkg= =G+vd -----END PGP SIGNATURE----- --93J1Ne9G7QAQMFJqlPhNgi4gf6rHmu8io--