From owner-freebsd-fortran@freebsd.org Sun Jan 26 13:03:19 2020 Return-Path: Delivered-To: freebsd-fortran@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id B36CD23D72B for ; Sun, 26 Jan 2020 13:03:19 +0000 (UTC) (envelope-from xavier@groumpf.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 485Cjg1wRpz4175 for ; Sun, 26 Jan 2020 13:03:19 +0000 (UTC) (envelope-from xavier@groumpf.org) Received: by mailman.nyi.freebsd.org (Postfix) id 41DB423D729; Sun, 26 Jan 2020 13:03:19 +0000 (UTC) Delivered-To: fortran@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 418B223D728; Sun, 26 Jan 2020 13:03:19 +0000 (UTC) (envelope-from xavier@groumpf.org) Received: from aragorn.amdh.fr (aragorn.groumpf.org [176.31.180.205]) by mx1.freebsd.org (Postfix) with ESMTP id 485Cjd30rkz4173; Sun, 26 Jan 2020 13:03:13 +0000 (UTC) (envelope-from xavier@groumpf.org) Received: from numenor.groumpf.org (unknown [78.251.129.10]) by aragorn.amdh.fr (Postfix) with ESMTP id 0A4D512BBB8; Sun, 26 Jan 2020 14:03:10 +0100 (CET) Received: from numenor.groumpf.org (localhost [127.0.0.1]) by numenor.groumpf.org (Postfix) with ESMTP id C940C4D240; Sun, 26 Jan 2020 14:03:10 +0100 (CET) X-Virus-Scanned: amavisd-new at groumpf.org Received: from numenor.groumpf.org ([127.0.0.1]) by numenor.groumpf.org (ns3.groumpf.org [127.0.0.1]) (amavisd-new, port 10024) with LMTP id y5V3crIogAsY; Sun, 26 Jan 2020 14:02:59 +0100 (CET) Received: from [192.168.100.20] (feanor.groumpf.org [192.168.100.20]) by numenor.groumpf.org (Postfix) with ESMTPS id 3242D4D2AA; Sun, 26 Jan 2020 14:02:59 +0100 (CET) Subject: Re: py-scipy (and others) with openblas References: <7cfb6af1-ec68-2bdc-0ed5-0405cd7fae78@groumpf.org> <20200125103852.50289133@dismail.de> To: freebsd-ports@freebsd.org From: Xavier Autocrypt: addr=xavier@groumpf.org; prefer-encrypt=mutual; keydata= mQINBFiPelQBEACjxxJccKqGx5KUjin2tIfHi571FlPG+85RiICdGgGQSt6aNLIveRoD28kU OnSpQpk6Nsq4WbQ9eyyo3e2iLJB3JK8AgUOYSHaf/9XRyXeHo+M4RGEp+nA3LfqrJ+or0HfS oS9cLkeDVOBfRSeiDeiKAZ/je7mCasL6v1PLT7vmfbIQfSFcM/GYoB+eDdWkt3Y5xRfVR1vi J1hHhiZofIfptmVEUwafSyYJq6KtHwsQX6Wart8BQtknE7KFhjF6rsqGFiAG2RHTT5VWaLZQ TqiEcSk99TedIdOU7i4WZILwx0UJ17tXoL6u1FO2dzbO3ZvSHFu8SbwmqsEA/R0XtTEueDCl B4EOO4KE8Iy9xYL4Ih4tNS67qetOiiWuHIqIUbR00+B7vFxZJh0FBBznQXy+XAMXtAtg4Oqt oN5lgnHjIlkCuJ7c8Ut27/IzMU/a4nqq4hKXMTn4iceHSA3vCEkgmbWFbAJTWPMDMzRDWPpW CZcJ0o0cG2dy4n43dhgtamk052xkD4w/OqPEoJWDHvb/zcO7gdryRzZDuOjSFHepuIttdO6E E3uWAZ/Pk7XamAIbKk8uaLUWAu4p/s2heI1IwDJUEtGzWn4WWWZqZHGdJgERL2oduwRvVvcx yY5uG063wKB2XDUcbND4bV9ey3JT7g9XLKk65Jh81P3tVXV0+wARAQABtClYYXZpZXIgSFVN QkVSVCA8eGF2aWVyQHhhdmllcmh1bWJlcnQubmV0PokCPgQTAQIAKAUCWI96VAIbLwUJB4Yf gAYLCQgHAwIGFQgCCQoLBBYCAwECHgECF4AACgkQgbW6+oca/hWw/A/9EPWOX3WgAKLrNpat 6KfJCXvFHSB1zdwfvDGnhCD5O0efs5DzI2dye0Masi0886VtByfdckIhJiSV6W9fRih9fDPe 0KVZYTR8O29gwibjtj9XpadcvxulljUKjmcUgfwhZaqHmHy4tFkjS6gE8eKc9oZsTzJQKYNp 8NsvnFSQuGeD1NCgDyNXFemIkPCG/q6+/inrcPuQJcni7wQepF4Z4E2Czq5egvglaBJUBlkf KoQwqeqM3fC4uKLhTWTqL2JAq+YxCmdDrDqepHtFlCBvcHb47FaTb0FSn8SbKkBcmzAyka6j SUGBpUuA/gZW6gWlHfKVJ7ylFO2shvkJZEX2r0p4nqUGLe+6FtBDJkPywtLWBAUMA95H/TfC EVbFiPGnG5LwQq0P/vakkKBv1O+HezJoBTTRHKzdWxyYtzc3ESGJnD6gzzq7h2yXhRsRwz4e 6IYTbN2lDSXWR1uMjyNgnYqtJto42jZ471CB6h9tGD6FnoirHk2RHRgQ9mkyxrkOUA34cJJ3 wxLza+hMfECey269QbFfP1f4IUWNmxzaGB2tEfQ8ppqCuuAMuQH9U7ZTb0B8DNKaKMjTcldz 4I36iLUkrciExs/ZutktESzUZJCedjIa96TUS2huM0VZAunSAsR1L0YX4bTYxcj0KwWfHiJV gU8K3MJqgytP7xq2mfI= Cc: phd_kimberlite@yahoo.co.jp, fortran@FreeBSD.org, starikarp@dismail.de Message-ID: <8b38bfce-7c03-4508-a605-aef136616679@groumpf.org> Date: Sun, 26 Jan 2020 14:02:54 +0100 User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:68.0) Gecko/20100101 Thunderbird/68.4.1 MIME-Version: 1.0 In-Reply-To: <20200125103852.50289133@dismail.de> Content-Type: multipart/signed; micalg=pgp-sha512; protocol="application/pgp-signature"; boundary="wniglJVlmIilZFdiwGeocDJ4r8GwWUEkJ" X-Rspamd-Queue-Id: 485Cjd30rkz4173 X-Spamd-Bar: ---- Authentication-Results: mx1.freebsd.org; dkim=none; dmarc=none; spf=none (mx1.freebsd.org: domain of xavier@groumpf.org has no SPF policy when checking 176.31.180.205) smtp.mailfrom=xavier@groumpf.org X-Spamd-Result: default: False [-4.01 / 15.00]; ARC_NA(0.00)[]; NEURAL_HAM_MEDIUM(-1.00)[-1.000,0]; RCVD_COUNT_FIVE(0.00)[5]; FROM_HAS_DN(0.00)[]; RCPT_COUNT_THREE(0.00)[4]; IP_SCORE(-0.91)[ip: (-8.29), ipnet: 176.31.0.0/16(1.66), asn: 16276(2.08), country: FR(0.00)]; HAS_ATTACHMENT(0.00)[]; MIME_GOOD(-0.20)[multipart/signed,multipart/mixed,text/plain]; TO_DN_NONE(0.00)[]; AUTH_NA(1.00)[]; DMARC_NA(0.00)[groumpf.org]; NEURAL_HAM_LONG(-1.00)[-1.000,0]; TO_MATCH_ENVRCPT_SOME(0.00)[]; RCVD_IN_DNSWL_NONE(0.00)[205.180.31.176.list.dnswl.org : 127.0.10.0]; R_SPF_NA(0.00)[]; SIGNED_PGP(-2.00)[]; RCVD_NO_TLS_LAST(0.10)[]; RECEIVED_SPAMHAUS_PBL(0.00)[10.129.251.78.khpj7ygk5idzvmvt5x4ziurxhy.zen.dq.spamhaus.net : 127.0.0.11]; R_DKIM_NA(0.00)[]; MIME_TRACE(0.00)[0:+,1:+,2:+,3:~]; ASN(0.00)[asn:16276, ipnet:176.31.0.0/16, country:FR]; FREEMAIL_CC(0.00)[yahoo.co.jp]; MID_RHS_MATCH_FROM(0.00)[]; FROM_EQ_ENVFROM(0.00)[] X-BeenThere: freebsd-fortran@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: Fortran on FreeBSD List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 26 Jan 2020 13:03:19 -0000 This is an OpenPGP/MIME signed message (RFC 4880 and 3156) --wniglJVlmIilZFdiwGeocDJ4r8GwWUEkJ Content-Type: multipart/mixed; boundary="JaxfxTNEN4sSSFRvOW8KpouVt76lcWSUR" --JaxfxTNEN4sSSFRvOW8KpouVt76lcWSUR Content-Type: text/plain; charset=utf-8 Content-Language: en-US Content-Transfer-Encoding: quoted-printable On 25/01/2020 16:38, starikarp@dismail.de wrote: > On Sat, 25 Jan 2020 14:07:57 +0100 > Xavier wrote: >=20 >> Hi, >> I looked at the posts from 22/01 about cblas/openblas, and ran in the >> very same problem. So I delete cblas, and let openblas running an >> upgrade. But pkg check -Bd show e an error, which is not fixed by >> rebuilding py37-numpy (twice): >> >>> py37-scipy is missing a required shared library: libopenblas.so >> >> The library exists : >>> lrwxr-xr-x 1 root wheel 16 Jan 25 11:59 >>> /usr/local/lib/libopenblas.so@ -> libopenblas.so.0 -rwxr-xr-x 1 >>> root wheel 31038608 Jan 25 11:59 /usr/local/lib/libopenblas.so.0* >> >> What can I do now ? >> >> TIA, >> >> Cheers, >> >> Xavier >> >=20 > I have same old work with py37-scipy and everything works... > I try the example from now and it works. > Please, check the attached jpg. >=20 Yes, indeed it works, because it is not a dependency problem, but a problem in pkg database, I verified it with a port exhibiting the problem, for which I'm sure there's shared libs : > [root@numenor ~]# pkg check -Bd suitesparse > Checking suitesparse: 100% > suitesparse is missing a required shared library: libopenblas.so But, when checking manually : > [root@numenor ~]# pkg list suitesparse |grep \.so$ |xargs ldd|grep open= blas > libopenblas.so =3D> /usr/local/lib/libopenblas.so (0x801c00000)= > libopenblas.so =3D> /usr/local/lib/libopenblas.so (0x801a00000)= > libopenblas.so =3D> /usr/local/lib/libopenblas.so (0x801600000)= In conclusion, I can safely ignore those errors I dunno whether the problem is in the packaging of the concerned port, or openblas. So, I Cc the maintainers Regards, Xavier --=20 Xavier Humbert - sysadmin & network engineer --JaxfxTNEN4sSSFRvOW8KpouVt76lcWSUR-- --wniglJVlmIilZFdiwGeocDJ4r8GwWUEkJ Content-Type: application/pgp-signature; name="signature.asc" Content-Description: OpenPGP digital signature Content-Disposition: attachment; filename="signature.asc" -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEESAZA8WgF/u/6AMGYgbW6+oca/hUFAl4tjgIACgkQgbW6+oca /hUf8A//S2jd+kcO38cvjGmpGIMNyJHu0OvHjIdJ8GGNJzq3jVt/6UVpRiCXKlVV vfHOAxaJVKJN5ErnGeEY7MdMM6IpdXQy0GZ40N/jfG2eEpQBIfJrECkugQEouLRF /fsqEgNE4za0aBqifPwaMMaaRxJO5v1PSae8zknXMpmF2jOtrByCENeL10oP7mJp h6VK2xtZzOoXQ+c+xGepxkKpZm877ZRr2v12YBP5JFncUP/Vn5FOFQUiIqswPMiy 9S53gse2vBNLUVeo4Xnz9G1r0/a8bDASmyCwsMWJ5eyzTq+JA8qGY35ka4yI3lvj +90uhZm+ZxDMS4QPlmyfLPG/pAvrs2nOqWSi+xTyUfA4Udp/4ehWk3mrOw5uLlvJ j6zBZLdseHk+Iiw2fhFJu8ZIqru9v4bHj+oTvzQg7Pe5Q/qIUBCWYBmjNo8/lALX QuvgcIq4YGLi/FIxzDeBMpRCIRirwai9yAoZR4AQwNRdcPuFF0PPdBSuWFdxx4oa 3VF+ek7mEN97qjd2nLOkZ4PY6NMsRo4cyDEklHN89dYv/U1tis2ocbA2bAeVy0TK nhcrHVuuEt2evH0lPkUhzrsRR3VFahKdQ4q5J1pIt//q4EdOLw20k4ErNr0qMyWy pglX2dNmktLR4YRV67VBEIg5MNIeRnCgtYXQzsh89W4cdLU+O7k= =lDsm -----END PGP SIGNATURE----- --wniglJVlmIilZFdiwGeocDJ4r8GwWUEkJ--