From owner-freebsd-ports-bugs@freebsd.org Sun Jul 19 01:57:04 2020 Return-Path: Delivered-To: freebsd-ports-bugs@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 36DD937A1F0 for ; Sun, 19 Jul 2020 01:57:04 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mailman.nyi.freebsd.org (unknown [127.0.1.3]) by mx1.freebsd.org (Postfix) with ESMTP id 4B8Sf80nYTz42K6 for ; Sun, 19 Jul 2020 01:57:04 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: by mailman.nyi.freebsd.org (Postfix) id 1B08A37A6AF; Sun, 19 Jul 2020 01:57:04 +0000 (UTC) Delivered-To: ports-bugs@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id 1AD4B37A4CC for ; Sun, 19 Jul 2020 01:57:04 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4B8Sf774CMz424T for ; Sun, 19 Jul 2020 01:57:03 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org (kenobi.freebsd.org [IPv6:2610:1c1:1:606c::50:1d]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id D304B14419 for ; Sun, 19 Jul 2020 01:57:03 +0000 (UTC) (envelope-from bugzilla-noreply@freebsd.org) Received: from kenobi.freebsd.org ([127.0.1.5]) by kenobi.freebsd.org (8.15.2/8.15.2) with ESMTP id 06J1v3BI015225 for ; Sun, 19 Jul 2020 01:57:03 GMT (envelope-from bugzilla-noreply@freebsd.org) Received: (from www@localhost) by kenobi.freebsd.org (8.15.2/8.15.2/Submit) id 06J1v3t4015224 for ports-bugs@FreeBSD.org; Sun, 19 Jul 2020 01:57:03 GMT (envelope-from bugzilla-noreply@freebsd.org) X-Authentication-Warning: kenobi.freebsd.org: www set sender to bugzilla-noreply@freebsd.org using -f From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 248089] [change request] biology/htslib: Upgrade to 1.10.2 + patch for libcurl API change Date: Sun, 19 Jul 2020 01:57:03 +0000 X-Bugzilla-Reason: CC X-Bugzilla-Type: new X-Bugzilla-Watch-Reason: None X-Bugzilla-Product: Ports & Packages X-Bugzilla-Component: Ports Framework X-Bugzilla-Version: Latest X-Bugzilla-Keywords: X-Bugzilla-Severity: Affects Some People X-Bugzilla-Who: jwb@freebsd.org X-Bugzilla-Status: New X-Bugzilla-Resolution: X-Bugzilla-Priority: --- X-Bugzilla-Assigned-To: portmgr@FreeBSD.org X-Bugzilla-Flags: X-Bugzilla-Changed-Fields: bug_id short_desc product version rep_platform op_sys bug_status bug_severity priority component assigned_to reporter cc attachments.created Message-ID: Content-Type: text/plain; charset="UTF-8" Content-Transfer-Encoding: quoted-printable X-Bugzilla-URL: https://bugs.freebsd.org/bugzilla/ Auto-Submitted: auto-generated MIME-Version: 1.0 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.33 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 19 Jul 2020 01:57:04 -0000 https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D248089 Bug ID: 248089 Summary: [change request] biology/htslib: Upgrade to 1.10.2 + patch for libcurl API change Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Ports Framework Assignee: portmgr@FreeBSD.org Reporter: jwb@freebsd.org CC: ports-bugs@FreeBSD.org Created attachment 216561 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D216561&action= =3Dedit Unified diff Upgrade to latest release + a fix for automatic reference downloads failing= due to a libcurl API change: https://github.com/samtools/samtools/issues/1254#issuecomment-656164294 Note that biology/htslib and biology/samtools should be upgraded at the same time to maintain API compatibility. Another PR for samtools will follow shortly. --=20 You are receiving this mail because: You are on the CC list for the bug.=