Date: Tue, 16 Apr 2019 21:04:03 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - 120armv7-quarterly][math/py-gau2grid] Failed for py36-gau2grid-1.3.1 in build Message-ID: <201904162104.x3GL430S086607@beefy13.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Log URL: http://beefy13.nyi.freebsd.org/data/120armv7-quarterly/499069/logs/py36-gau2grid-1.3.1.log Build URL: http://beefy13.nyi.freebsd.org/build.html?mastername=120armv7-quarterly&build=499069 Log: =>> Building math/py-gau2grid build started at Tue Apr 16 21:03:19 UTC 2019 port directory: /usr/ports/math/py-gau2grid package name: py36-gau2grid-1.3.1 building for: FreeBSD 120armv7-quarterly-job-06 12.0-RELEASE-p3 FreeBSD 12.0-RELEASE-p3 1200086 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2019Q2/math/py-gau2grid/Makefile 491311 2019-01-26 20:29:29Z yuri $ Poudriere version: 3.2.8-3-g02cc9753 Host OSVERSION: 1300009 Jail OSVERSION: 1200086 Job Id: 06 ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200086 UNAME_v=FreeBSD 12.0-RELEASE-p3 1200086 UNAME_r=12.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-3-g02cc9753 MASTERMNT=/usr/local/poudriere/data/.m/120armv7-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=120armv7-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/120armv7-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py36 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py36 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 HOME=/wrkdirs/usr/ports/math/py-gau2grid/work-py36 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/math/py-gau2grid/work-py36/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=opt-1.pyc PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/gau2grid" EXAMPLESDIR="share/examples/gau2grid" DATADIR="share/gau2grid" WWWDIR="www/gau2grid" ETCDIR="etc/gau2grid" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/gau2grid DOCSDIR=/usr/local/share/doc/gau2grid EXAMPLESDIR=/usr/local/share/examples/gau2grid WWWDIR=/usr/local/www/gau2grid ETCDIR=/usr/local/etc/gau2grid --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 6.0.1 (tags/RELEASE_601/final 335540) (based on LLVM 6.0.1) Target: armv7-unknown-freebsd12.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=12.0-RELEASE-p3 OSREL=12.0 OSVERSION=1200086 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSD3CLAUSE accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py36-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_5.txz [120armv7-quarterly-job-06] Installing pkg-1.10.5_5... [120armv7-quarterly-job-06] Extracting pkg-1.10.5_5: .......... done ===> py36-gau2grid-1.3.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py36-gau2grid-1.3.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-gau2grid-1.3.1 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by py36-gau2grid-1.3.1 for building => SHA256 Checksum OK for dgasmith-gau2grid-v1.3.1_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ <snip> If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> py36-gau2grid-1.3.1 depends on executable: cmake - found ===> Returning to build of py36-gau2grid-1.3.1 ===> py36-gau2grid-1.3.1 depends on file: /usr/local/bin/cmake - found ===> py36-gau2grid-1.3.1 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.8.2_1,2.txz [120armv7-quarterly-job-06] Installing ninja-1.8.2_1,2... [120armv7-quarterly-job-06] `-- Installing python27-2.7.16... [120armv7-quarterly-job-06] `-- Extracting python27-2.7.16: .......... done [120armv7-quarterly-job-06] Extracting ninja-1.8.2_1,2: ......... done Message from python27-2.7.16: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py36-gau2grid-1.3.1 depends on executable: ninja - found ===> Returning to build of py36-gau2grid-1.3.1 ===> py36-gau2grid-1.3.1 depends on file: /usr/local/bin/python3.6 - found =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for py36-gau2grid-1.3.1 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build -- The C compiler identification is Clang 6.0.1 -- Check for working C compiler: /nxb-bin/usr/bin/cc -- Check for working C compiler: /nxb-bin/usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Setting (unspecified) option MAX_AM: 8 -- Setting (unspecified) option SPHERICAL_ORDER: gaussian -- Setting (unspecified) option CARTESIAN_ORDER: row -- Setting option MAX_AM: 8 -- Setting option CMAKE_BUILD_TYPE: Release -- Setting (unspecified) option ENABLE_XHOST: ON -- Performing Test CMAKE_C_FLAGS [-xHost] - Failed -- Performing Test CMAKE_C_FLAGS [-march=native] - Failed CMake Warning at cmake/psi4OptionsTools.cmake:94 (message): Option unfulfilled as none of -xHost;-march=native valid Call Stack (most recent call first): cmake/psi4OptionsTools.cmake:137 (add_C_or_CXX_flags) cmake/psi4OptionsTools.cmake:168 (add_C_flags) cmake/psi4OptionsTools.cmake:186 (add_flags) CMakeLists.txt:22 (option_with_flags) -- Setting (unspecified) option BUILD_FPIC: ON -- Setting (unspecified) option BUILD_SHARED_LIBS: ON -- Setting (unspecified) option ENABLE_GENERIC: OFF -- Setting (unspecified) option CMAKE_INSTALL_LIBDIR: lib -- Setting option PYMOD_INSTALL_LIBDIR: /usr/local/lib/python3.6/site-packages -- Setting option INSTALL_PYMOD: ON -- Setting (unspecified) option NATIVE_PYTHON_INSTALL: OFF -- gau2grid install: /usr/local -- Found PythonInterp: /usr/local/bin/python3.6 (found suitable version "3.6.8", minimum required is "3.6") -- Found PythonLibs: /usr/local/lib/libpython3.6m.so -- [36mFound Python 3.6[m: /usr/local/bin/python3.6 (found version 3.6.8) Traceback (most recent call last): File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module> from . import multiarray File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module> from . import overrides File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module> from numpy.core._multiarray_umath import ( ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<string>", line 1, in <module> File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module> from . import core File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module> raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. Here is how to proceed: - If you're working with a numpy git repository, try `git clean -xdf` (removes all files not under version control) and rebuild numpy. - If you are simply trying to use the numpy version that you have installed: your installation is broken - please reinstall numpy. - If you have already reinstalled and that did not fix the problem, then: 1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6), and that you have no directories in your PATH or PYTHONPATH that can interfere with the Python and numpy versions you're trying to use. 2. If (1) looks fine, you can open a new issue at https://github.com/numpy/numpy/issues. Please include details on: - how you installed Python - how you installed numpy - your operating system - whether or not you have multiple versions of Python installed - if you built from source, your compiler versions and ideally a build log Note: this error has many possible causes, so please don't comment on an existing issue about this - open a new one instead. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: BOOST_PYTHON_SUFFIX CMAKE_COLOR_MAKEFILE CMAKE_CXX_COMPILER CMAKE_CXX_FLAGS CMAKE_CXX_FLAGS_DEBUG CMAKE_CXX_FLAGS_RELEASE CMAKE_C_FLAGS_DEBUG CMAKE_EXE_LINKER_FLAGS CMAKE_MODULE_LINKER_FLAGS CMAKE_VERBOSE_MAKEFILE THREADS_HAVE_PTHREAD_ARG -- Build files have been written to: /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build =========================================================================== =======================<phase: build >============================ ===> Building for py36-gau2grid-1.3.1 [1/9] cd /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build && /usr/local/bin/python3.6 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build', cartesian_order='row', spherical_order='gaussian')" FAILED: gau2grid.h gau2grid_orbital.c gau2grid_phi.c gau2grid_deriv1.c gau2grid_deriv2.c gau2grid_spherical.c gau2grid_helper.c cd /wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build && /usr/local/bin/python3.6 -c "import sys; sys.path.append('/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1'); import gau2grid as gg; gg.c_gen.generate_c_gau2grid(8, path='/wrkdirs/usr/ports/math/py-gau2grid/work-py36/.build', cartesian_order='row', spherical_order='gaussian')" Traceback (most recent call last): File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 16, in <module> from . import multiarray File "/usr/local/lib/python3.6/site-packages/numpy/core/multiarray.py", line 12, in <module> from . import overrides File "/usr/local/lib/python3.6/site-packages/numpy/core/overrides.py", line 6, in <module> from numpy.core._multiarray_umath import ( ImportError: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" During handling of the above exception, another exception occurred: Traceback (most recent call last): File "<string>", line 1, in <module> File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1/gau2grid/__init__.py", line 5, in <module> from . import RSH File "/wrkdirs/usr/ports/math/py-gau2grid/work-py36/gau2grid-1.3.1/gau2grid/RSH.py", line 10, in <module> import numpy as np File "/usr/local/lib/python3.6/site-packages/numpy/__init__.py", line 142, in <module> from . import core File "/usr/local/lib/python3.6/site-packages/numpy/core/__init__.py", line 47, in <module> raise ImportError(msg) ImportError: IMPORTANT: PLEASE READ THIS FOR ADVICE ON HOW TO SOLVE THIS ISSUE! Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. Here is how to proceed: - If you're working with a numpy git repository, try `git clean -xdf` (removes all files not under version control) and rebuild numpy. - If you are simply trying to use the numpy version that you have installed: your installation is broken - please reinstall numpy. - If you have already reinstalled and that did not fix the problem, then: 1. Check that you are using the Python you expect (you're using /usr/local/bin/python3.6), and that you have no directories in your PATH or PYTHONPATH that can interfere with the Python and numpy versions you're trying to use. 2. If (1) looks fine, you can open a new issue at https://github.com/numpy/numpy/issues. Please include details on: - how you installed Python - how you installed numpy - your operating system - whether or not you have multiple versions of Python installed - if you built from source, your compiler versions and ideally a build log Note: this error has many possible causes, so please don't comment on an existing issue about this - open a new one instead. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/math/py-gau2grid
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