From owner-svn-ports-all@freebsd.org Mon Dec 19 15:54:40 2016 Return-Path: Delivered-To: svn-ports-all@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id B11E1C88DBC; Mon, 19 Dec 2016 15:54:40 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 8B6591299; Mon, 19 Dec 2016 15:54:40 +0000 (UTC) (envelope-from sunpoet@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id uBJFsdqb041759; Mon, 19 Dec 2016 15:54:39 GMT (envelope-from sunpoet@FreeBSD.org) Received: (from sunpoet@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id uBJFsdHu041754; Mon, 19 Dec 2016 15:54:39 GMT (envelope-from sunpoet@FreeBSD.org) Message-Id: <201612191554.uBJFsdHu041754@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: sunpoet set sender to sunpoet@FreeBSD.org using -f From: Sunpoet Po-Chuan Hsieh Date: Mon, 19 Dec 2016 15:54:39 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r428942 - in head/biology: . p5-Bio-Coordinate X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 19 Dec 2016 15:54:40 -0000 Author: sunpoet Date: Mon Dec 19 15:54:39 2016 New Revision: 428942 URL: https://svnweb.freebsd.org/changeset/ports/428942 Log: - Add p5-Bio-Coordinate 1.007001 Bio::Coordinate classes are used for working with various biological coordinate systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples. WWW: http://search.cpan.org/dist/Bio-Coordinate/ Added: head/biology/p5-Bio-Coordinate/ head/biology/p5-Bio-Coordinate/Makefile (contents, props changed) head/biology/p5-Bio-Coordinate/distinfo (contents, props changed) head/biology/p5-Bio-Coordinate/pkg-descr (contents, props changed) head/biology/p5-Bio-Coordinate/pkg-plist (contents, props changed) Modified: head/biology/Makefile Modified: head/biology/Makefile ============================================================================== --- head/biology/Makefile Mon Dec 19 15:54:34 2016 (r428941) +++ head/biology/Makefile Mon Dec 19 15:54:39 2016 (r428942) @@ -58,6 +58,7 @@ SUBDIR += njplot SUBDIR += p5-AcePerl SUBDIR += p5-Bio-ASN1-EntrezGene + SUBDIR += p5-Bio-Coordinate SUBDIR += p5-Bio-Das SUBDIR += p5-Bio-Das-Lite SUBDIR += p5-Bio-GFF3 Added: head/biology/p5-Bio-Coordinate/Makefile ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Coordinate/Makefile Mon Dec 19 15:54:39 2016 (r428942) @@ -0,0 +1,24 @@ +# Created by: Sunpoet Po-Chuan Hsieh +# $FreeBSD$ + +PORTNAME= Bio-Coordinate +PORTVERSION= 1.007001 +CATEGORIES= biology perl5 +MASTER_SITES= CPAN +PKGNAMEPREFIX= p5- + +MAINTAINER= sunpoet@FreeBSD.org +COMMENT= Modules for working with biological coordinates + +LICENSE= ART10 GPLv1 +LICENSE_COMB= dual +LICENSE_FILE= ${WRKSRC}/LICENSE + +BUILD_DEPENDS= p5-BioPerl>=1.007000:biology/p5-BioPerl +RUN_DEPENDS:= ${BUILD_DEPENDS} + +NO_ARCH= yes +USE_PERL5= configure +USES= perl5 + +.include Added: head/biology/p5-Bio-Coordinate/distinfo ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Coordinate/distinfo Mon Dec 19 15:54:39 2016 (r428942) @@ -0,0 +1,3 @@ +TIMESTAMP = 1482042798 +SHA256 (Bio-Coordinate-1.007001.tar.gz) = 63c0a652ec60a2a905d71c85c08b96fcfb12fc784cac8a5d029eb9647d45d619 +SIZE (Bio-Coordinate-1.007001.tar.gz) = 44111 Added: head/biology/p5-Bio-Coordinate/pkg-descr ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Coordinate/pkg-descr Mon Dec 19 15:54:39 2016 (r428942) @@ -0,0 +1,4 @@ +Bio::Coordinate classes are used for working with various biological coordinate +systems. See Bio::Coordinate::Collection and Bio::Collection::Pair for examples. + +WWW: http://search.cpan.org/dist/Bio-Coordinate/ Added: head/biology/p5-Bio-Coordinate/pkg-plist ============================================================================== --- /dev/null 00:00:00 1970 (empty, because file is newly added) +++ head/biology/p5-Bio-Coordinate/pkg-plist Mon Dec 19 15:54:39 2016 (r428942) @@ -0,0 +1,26 @@ +%%SITE_PERL%%/Bio/Coordinate.pm +%%SITE_PERL%%/Bio/Coordinate/Chain.pm +%%SITE_PERL%%/Bio/Coordinate/Collection.pm +%%SITE_PERL%%/Bio/Coordinate/ExtrapolatingPair.pm +%%SITE_PERL%%/Bio/Coordinate/GeneMapper.pm +%%SITE_PERL%%/Bio/Coordinate/Graph.pm +%%SITE_PERL%%/Bio/Coordinate/MapperI.pm +%%SITE_PERL%%/Bio/Coordinate/Pair.pm +%%SITE_PERL%%/Bio/Coordinate/Result.pm +%%SITE_PERL%%/Bio/Coordinate/Result/Gap.pm +%%SITE_PERL%%/Bio/Coordinate/Result/Match.pm +%%SITE_PERL%%/Bio/Coordinate/ResultI.pm +%%SITE_PERL%%/Bio/Coordinate/Utils.pm +%%PERL5_MAN3%%/Bio::Coordinate.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Chain.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Collection.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::ExtrapolatingPair.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::GeneMapper.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Graph.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::MapperI.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Pair.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result::Gap.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Result::Match.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::ResultI.3.gz +%%PERL5_MAN3%%/Bio::Coordinate::Utils.3.gz