Date: Mon, 13 Sep 2021 13:43:39 +0000 From: bugzilla-noreply@freebsd.org To: ports-bugs@FreeBSD.org Subject: [Bug 258478] biology/emboss: Add wrapper to eliminate need for altered PATH Message-ID: <bug-258478-7788@https.bugs.freebsd.org/bugzilla/>
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https://bugs.freebsd.org/bugzilla/show_bug.cgi?id=3D258478 Bug ID: 258478 Summary: biology/emboss: Add wrapper to eliminate need for altered PATH Product: Ports & Packages Version: Latest Hardware: Any OS: Any Status: New Severity: Affects Some People Priority: --- Component: Individual Port(s) Assignee: wen@FreeBSD.org Reporter: jwb@freebsd.org Flags: maintainer-feedback?(wen@FreeBSD.org) Assignee: wen@FreeBSD.org Created attachment 227873 --> https://bugs.freebsd.org/bugzilla/attachment.cgi?id=3D227873&action= =3Dedit Unified diff adding C wrapper The attached patch turns emboss commands into subcommands much like those u= sed by bwa, samtools, bedtools, etc. This allows users to run emboss commands without altering their PATH, and allows simultaneous access to conflicting commands such as /usr/local/bin/garnier and /usr/local/emboss/bin/garnier. E.g. emboss garnier # Runs /usr/local/emboss/bin/garnier garnier # Runs /usr/local/bin/garnier (from biology/fasta) --=20 You are receiving this mail because: You are the assignee for the bug.=
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