From nobody Sun Mar 3 10:04:24 2024 X-Original-To: dev-commits-ports-all@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id 4Tncqs19Hyz5CSNN; Sun, 3 Mar 2024 10:04:25 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Tncqs0X4mz4b8w; Sun, 3 Mar 2024 10:04:25 +0000 (UTC) (envelope-from git@FreeBSD.org) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1709460265; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=At7y2M07oRLyR+COFYFqpYukkDdCnQvLjSV69dAON/c=; b=bf9hMJT/ybzBulmn5oulPKniXS3fzllQmdt7pgpE2+avQ2S2dr40NnQ9M73qmf99NuhtsS I5Y4lQinvMJpzo1SnrOhUUek3rweJ1FYIFx40cj7vCfUfVHk+bNUBC2lUNHw7RE6GGuaZA gxhqouG14GMh/LIa7LAEHszOfQU9XijXXtZ2s9e/FLl22f4macY1p5RZM9/I57U3dPc7Lq nFzRry+F0mVCsl4uXDeKIwh4dVYWNFj+JoIZUVGDXKtCAIGuglSjnT4l0adbFAY+lIf8kr /QcJwG8ZdEgpjKEU83iXcZtWCXEA4vJGaxer0s3wsg7GE2mJsjelj4AbXqC/Mw== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1709460265; a=rsa-sha256; cv=none; b=hS4owtRTm4nzHE5nN1zwtRxxdRYgZfywcfHg+3AM4fmcd9vRq3E2unb2ZMrD1D2iPC3ZYQ t4WP4BDAxt9YuEaiDuZCmqfMpH/sTVdPC+LrAALORWqyiVyU+CrST5PE6U+Z4HHc9lS1ye 8Joy64CodxewM5wLu4ycvblp54vlg1u0FX59EmqV128iCAfrfu5IYV3S1668D22Fqjef6m xkVToVBqonDhzVdyIDyDI2Qwsxsc5zgDTS4HER7pHlydRaYS1XIKT5GBnx+4CDqOfCX9qB FO0lRWneW8wWsOuGPlOxqPRYZiaaaqw2oUIl+GCLDk3NJP5wbvNJEjM5Ak9OyQ== ARC-Authentication-Results: i=1; mx1.freebsd.org; none ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1709460265; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=At7y2M07oRLyR+COFYFqpYukkDdCnQvLjSV69dAON/c=; b=Tmmwa14pyrJsup108HL9v8E3O1edPLK+ST+8ET96qnFf7qWC0J4s3P/AExvKH4+Fe8DGjZ 8T327xnVQHrdwSxvXN/c8zsDt9mWCa5GFk5ow3EViOIslPIpRSQkpT1Y38+76cCYM53Y/D 4tzWblR62PWqqAnzg5QJrGMDKIN+Pf46dCVoCwBttrRnvt3GwxxeLlPqlhzTF/xRuXjtqi CADPEuoFIEpEF23KtUMemf+JPOW5tWj+L/g0VizcfbYZXHR4CUSPzKS2h8Atsm6F0NlAdQ q0Simbgce7eNvrTtVyI9+MZSIWG1ePtyVRJhr3XDzGZCoxxh/qEEkuJFrItnYA== Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 4Tncqs06RgzZWs; Sun, 3 Mar 2024 10:04:25 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.17.1/8.17.1) with ESMTP id 423A4OCc090974; Sun, 3 Mar 2024 10:04:24 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.17.1/8.17.1/Submit) id 423A4OIJ090971; Sun, 3 Mar 2024 10:04:24 GMT (envelope-from git) Date: Sun, 3 Mar 2024 10:04:24 GMT Message-Id: <202403031004.423A4OIJ090971@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Nuno Teixeira Subject: git: c779176e8acd - main - biology/locarna: Move man pages to share/man List-Id: Commit messages for all branches of the ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-all List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-all@freebsd.org X-BeenThere: dev-commits-ports-all@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: eduardo X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: c779176e8acd922a35343840de84efffa4974bd0 Auto-Submitted: auto-generated The branch main has been updated by eduardo: URL: https://cgit.FreeBSD.org/ports/commit/?id=c779176e8acd922a35343840de84efffa4974bd0 commit c779176e8acd922a35343840de84efffa4974bd0 Author: Nuno Teixeira AuthorDate: 2024-03-03 09:21:58 +0000 Commit: Nuno Teixeira CommitDate: 2024-03-03 10:04:08 +0000 biology/locarna: Move man pages to share/man Approved by: portmgr (blanket) --- biology/locarna/Makefile | 2 ++ biology/locarna/pkg-plist | 56 +++++++++++++++++++++++------------------------ 2 files changed, 30 insertions(+), 28 deletions(-) diff --git a/biology/locarna/Makefile b/biology/locarna/Makefile index 53d51d26f8c8..a6c74fd931e6 100644 --- a/biology/locarna/Makefile +++ b/biology/locarna/Makefile @@ -1,5 +1,6 @@ PORTNAME= locarna DISTVERSION= 2.0.0 +PORTREVISION= 1 CATEGORIES= biology MASTER_SITES= https://github.com/s-will/LocARNA/releases/download/v${DISTVERSION}/ @@ -27,6 +28,7 @@ SHEBANG_FILES= src/Utils/locarna_mcc \ src/Tests/test_programs GNU_CONFIGURE= yes +GNU_CONFIGURE_MANPREFIX= ${PREFIX}/share INSTALL_TARGET= install-strip TEST_TARGET= check # one test fails, see https://github.com/s-will/LocARNA/issues/81 diff --git a/biology/locarna/pkg-plist b/biology/locarna/pkg-plist index 0d6039099397..aaf183bf0bec 100644 --- a/biology/locarna/pkg-plist +++ b/biology/locarna/pkg-plist @@ -103,32 +103,32 @@ lib/perl/MLocarna/Tree.pm lib/perl/MLocarna/threaded.pm lib/perl/MLocarna/unthreaded.pm libdata/pkgconfig/LocARNA-2.0.pc -man/man1/aln-seqs.pl.1.gz -man/man1/aln2fa.pl.1.gz -man/man1/alnsel.pl.1.gz -man/man1/average-dot.pl.1.gz -man/man1/dot2pp.1.gz -man/man1/exparna_p.1.gz -man/man1/exploc_p.1.gz -man/man1/gen-reliab-dot.pl.1.gz -man/man1/locarna-mea.pl.1.gz -man/man1/locarna-motif-scan.1.gz -man/man1/locarna.1.gz -man/man1/locarna_deviation.1.gz -man/man1/locarna_mcc.1.gz -man/man1/locarna_p.1.gz -man/man1/locarna_rnafold_pp.1.gz -man/man1/locarnap-predict-and-plot.pl.1.gz -man/man1/locarnap-realign-all.pl.1.gz -man/man1/locarnap-revcomp.pl.1.gz -man/man1/locarnap-revisit-RNAz-hits.pl.1.gz -man/man1/locarnap_fit.1.gz -man/man1/locarnate.1.gz -man/man1/mlocarna.1.gz -man/man1/mlocarna_nnames.1.gz -man/man1/plot-bmprobs.1.gz -man/man1/pp2dot.1.gz -man/man1/reliability-profile.pl.1.gz -man/man1/ribosum2cc.1.gz -man/man1/sparse.1.gz +share/man/man1/aln-seqs.pl.1.gz +share/man/man1/aln2fa.pl.1.gz +share/man/man1/alnsel.pl.1.gz +share/man/man1/average-dot.pl.1.gz +share/man/man1/dot2pp.1.gz +share/man/man1/exparna_p.1.gz +share/man/man1/exploc_p.1.gz +share/man/man1/gen-reliab-dot.pl.1.gz +share/man/man1/locarna-mea.pl.1.gz +share/man/man1/locarna-motif-scan.1.gz +share/man/man1/locarna.1.gz +share/man/man1/locarna_deviation.1.gz +share/man/man1/locarna_mcc.1.gz +share/man/man1/locarna_p.1.gz +share/man/man1/locarna_rnafold_pp.1.gz +share/man/man1/locarnap-predict-and-plot.pl.1.gz +share/man/man1/locarnap-realign-all.pl.1.gz +share/man/man1/locarnap-revcomp.pl.1.gz +share/man/man1/locarnap-revisit-RNAz-hits.pl.1.gz +share/man/man1/locarnap_fit.1.gz +share/man/man1/locarnate.1.gz +share/man/man1/mlocarna.1.gz +share/man/man1/mlocarna_nnames.1.gz +share/man/man1/plot-bmprobs.1.gz +share/man/man1/pp2dot.1.gz +share/man/man1/reliability-profile.pl.1.gz +share/man/man1/ribosum2cc.1.gz +share/man/man1/sparse.1.gz %%DATADIR%%/Matrices/RIBOSUM85_60