From owner-freebsd-pkg-fallout@freebsd.org Wed Aug 15 01:26:47 2018 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 8BE2B106D57C for ; Wed, 15 Aug 2018 01:26:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id 2B57E71ADC for ; Wed, 15 Aug 2018 01:26:47 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id E4052106D57B; Wed, 15 Aug 2018 01:26:46 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C2390106D57A for ; Wed, 15 Aug 2018 01:26:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 77AA471ADA; Wed, 15 Aug 2018 01:26:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (beefy10.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:ed]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 58AD723771; Wed, 15 Aug 2018 01:26:46 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy10.nyi.freebsd.org (localhost [127.0.0.1]) by beefy10.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id w7F1QkIe081054; Wed, 15 Aug 2018 01:26:46 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy10.nyi.freebsd.org (8.15.2/8.15.2/Submit) id w7F1QkpJ081052; Wed, 15 Aug 2018 01:26:46 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Wed, 15 Aug 2018 01:26:46 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201808150126.w7F1QkpJ081052@beefy10.nyi.freebsd.org> To: jwb@FreeBSD.org Subject: [package - 111i386-default][biology/unanimity] Failed for unanimity-g20180307_1 in build-depends Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.27 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 15 Aug 2018 01:26:47 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/biology/unanimity/Makefile 476723 2018-08-09 06:58:30Z jbeich $ Log URL: http://beefy10.nyi.freebsd.org/data/111i386-default/477123/logs/unanimity-g20180307_1.log Build URL: http://beefy10.nyi.freebsd.org/build.html?mastername=111i386-default&build=477123 Log: =>> Building biology/unanimity build started at Wed Aug 15 01:26:39 UTC 2018 port directory: /usr/ports/biology/unanimity package name: unanimity-g20180307_1 building for: FreeBSD 111i386-default-job-12 11.1-RELEASE-p12 FreeBSD 11.1-RELEASE-p12 i386 maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/unanimity/Makefile 476723 2018-08-09 06:58:30Z jbeich $ Poudriere version: 3.2.7-2-g1cf194be Host OSVERSION: 1200069 Jail OSVERSION: 1101001 Job Id: 12 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1101001 UNAME_v=FreeBSD 11.1-RELEASE-p12 UNAME_r=11.1-RELEASE-p12 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.7-2-g1cf194be MASTERMNT=/usr/local/poudriere/data/.m/111i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/111i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=111i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/111i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PKG_CONFIG=pkgconf PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/unanimity/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/unanimity/work HOME=/wrkdirs/usr/ports/biology/unanimity/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/unanimity/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/unanimity/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/unanimity/work HOME=/wrkdirs/usr/ports/biology/unanimity/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/unanimity/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/biology/unanimity/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing -msse2 -Wno-c++11-narrowing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing -msse2 -Wno-c++11-narrowing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PORTDOCS="" PORTEXAMPLES="" CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=11.1 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/unanimity" EXAMPLESDIR="share/examples/unanimity" DATADIR="share/unanimity" WWWDIR="www/unanimity" ETCDIR="etc/unanimity" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/unanimity DOCSDIR=/usr/local/share/doc/unanimity EXAMPLESDIR=/usr/local/share/examples/unanimity WWWDIR=/usr/local/www/unanimity ETCDIR=/usr/local/etc/unanimity --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=error: invalid value 'c++17' in '-std=c++17' CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=error: invalid value 'gnu++17' in '-std=gnu++17' _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 4.0.0 (tags/RELEASE_400/final 297347) (based on LLVM 4.0.0) Target: i386-unknown-freebsd11.1 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=11.1-RELEASE-p12 OSREL=11.1 OSVERSION=1101001 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =================================================== ===> License BSD3CLAUSE accepted by the user =========================================================================== =================================================== ===> unanimity-g20180307_1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.5_1.txz [111i386-default-job-12] Installing pkg-1.10.5_1... [111i386-default-job-12] Extracting pkg-1.10.5_1: .......... done ===> unanimity-g20180307_1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of unanimity-g20180307_1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by unanimity-g20180307_1 for building =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by unanimity-g20180307_1 for building => SHA256 Checksum OK for PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD3CLAUSE accepted by the user ===> Fetching all distfiles required by unanimity-g20180307_1 for building ===> Extracting for unanimity-g20180307_1 => SHA256 Checksum OK for PacificBiosciences-unanimity-g20180307-6f11a13e1472b8c00337ba8c5e94bf83bdab31d6_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for unanimity-g20180307_1 ===> Applying FreeBSD patches for unanimity-g20180307_1 =========================================================================== =================================================== ===> unanimity-g20180307_1 depends on package: pbseqan==g20171002 - not found ===> Installing existing package /packages/All/pbseqan-g20171002.txz [111i386-default-job-12] Installing pbseqan-g20171002... [111i386-default-job-12] Extracting pbseqan-g20171002: .......... done ===> unanimity-g20180307_1 depends on package: pbseqan==g20171002 - found ===> Returning to build of unanimity-g20180307_1 ===> unanimity-g20180307_1 depends on package: pbbam==g20180416 - not found ===> Installing existing package /packages/All/pbbam-g20180416_1.txz [111i386-default-job-12] Installing pbbam-g20180416_1... [111i386-default-job-12] `-- Installing boost-libs-1.68.0... [111i386-default-job-12] | `-- Installing icu-62.1_2,1... [111i386-default-job-12] | `-- Extracting icu-62.1_2,1: .......... done [111i386-default-job-12] `-- Extracting boost-libs-1.68.0: .......... done [111i386-default-job-12] `-- Installing htslib-1.9... [111i386-default-job-12] | `-- Installing curl-7.61.0_1... [111i386-default-job-12] | | `-- Installing ca_root_nss-3.38... [111i386-default-job-12] | | `-- Extracting ca_root_nss-3.38: ........ done [111i386-default-job-12] | | `-- Installing libnghttp2-1.32.0... [111i386-default-job-12] | | `-- Extracting libnghttp2-1.32.0: .......... done [111i386-default-job-12] | `-- Extracting curl-7.61.0_1: .......... done [111i386-default-job-12] `-- Extracting htslib-1.9: .......... done [111i386-default-job-12] Extracting pbbam-g20180416_1: .......... done Message from boost-libs-1.68.0: You have built the Boost library with thread support. Don't forget to add -pthread to your linker options when linking your code. Message from ca_root_nss-3.38: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> unanimity-g20180307_1 depends on package: pbbam==g20180416 - not found *** Error code 1 Stop. make: stopped in /usr/ports/biology/unanimity