Date: Thu, 12 Nov 2020 01:03:31 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][math/R-cran-sf] Failed for R-cran-sf-0.9.6 in stage Message-ID: <202011120103.0AC13VgO011526@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: tota@FreeBSD.org Last committer: tota@FreeBSD.org Ident: $FreeBSD: head/math/R-cran-sf/Makefile 549575 2020-09-22 11:28:26Z tota $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p554114_s367356/logs/R-cran-sf-0.9.6.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p554114_s367356 Log: =>> Building math/R-cran-sf build started at Thu Nov 12 00:59:53 UTC 2020 port directory: /usr/ports/math/R-cran-sf package name: R-cran-sf-0.9.6 building for: FreeBSD head-powerpc64-default-job-16 13.0-CURRENT FreeBSD 13.0-CURRENT 1300125 powerpc maintained by: tota@FreeBSD.org Makefile ident: $FreeBSD: head/math/R-cran-sf/Makefile 549575 2020-09-22 11:28:26Z tota $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300121 Jail OSVERSION: 1300125 Job Id: 16 !!! Jail is newer than host. (Jail: 1300125, Host: 1300121) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300125 UNAME_v=FreeBSD 13.0-CURRENT 1300125 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- tota@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- "--with-proj-api=yes" --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- F77="gfortran9" FC="gfortran9" FFLAGS="-O -Wl,-rpath=/usr/local/lib/gcc9" FCFLAGS="-Wl,-rpath=/usr/local/lib/gcc9" XDG_DATA_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/math/R-cran-sf/work HOME=/wrkdirs/usr/ports/math/R-cran-sf/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/math/R-cran-sf/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -Wl,-rpath=/usr/local/lib/gcc9 -L/usr/local/lib/gcc9 -B/usr/local/bin -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- R_MOD_DIR=lib/R/library/sf OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/sf" EXAMPLESDIR="share/examples/sf" DATADIR="share/sf" WWWDIR="www/sf" ETCDIR="etc/sf" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/sf DOCSDIR=/usr/local/share/doc/sf EXAMPLESDIR=/usr/local/share/examples/sf WWWDIR=/usr/local/www/sf ETCDIR=/usr/local/etc/sf --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 11.0.0 (git@github.com:llvm/llvm-project.git llvmorg-11.0.0-0-g176249bd673) Target: powerpc64-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=powerpc64 PPC_ABI=ELFv2 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300125 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> R-cran-sf-0.9.6 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.15.10.txz [head-powerpc64-default-job-16] Installing pkg-1.15.10... [head-powerpc64-default-job-16] Extracting pkg-1.15.10: .......... done ===> R-cran-sf-0.9.6 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of R-cran-sf-0.9.6 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-0.9.6 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-0.9.6 for building => SHA256 Checksum OK for sf_0.9-6.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 MIT accepted by the user ===> Fetching all distfiles required by R-cran-sf-0.9.6 for building ===> Extracting for R-cran-sf-0.9.6 => SHA256 Checksum OK for sf_0.9-6.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for R-cran-sf-0.9.6 =========================================================================== =======================<phase: build-depends >============================ ===> R-cran-sf-0.9.6 depends on package: R-cran-classInt>=0.4.1 - not found ===> Installing existing package /packages/All/R-cran-classInt-0.4.3_1.txz [head-powerpc64-default-job-16] Installing R-cran-classInt-0.4.3_1... [head-powerpc64-default-job-16] `-- Installing R-4.0.3_1... [head-powerpc64-default-job-16] | `-- Installing cairo-1.16.0_1,3... [head-powerpc64-default-job-16] | | `-- Installing fontconfig-2.13.92_2,1... [head-powerpc64-default-job-16] | | `-- Installing expat-2.2.8... [head-powerpc64-default-job-16] | | `-- Extracting expat-2.2.8: .......... done [head-powerpc64-default-job-16] | | `-- Installing freetype2-2.10.4... [head-powerpc64-default-job-16] | | | `-- Installing png-1.6.37... [head-powerpc64-default-job-16] | | | `-- Extracting png-1.6.37: .......... done <snip> For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===== Message from bash-completion-2.11,2: -- To enable the bash completion library, add the following to your .bashrc file: [[ $PS1 && -f /usr/local/share/bash-completion/bash_completion.sh ]] && \ source /usr/local/share/bash-completion/bash_completion.sh See /usr/local/share/doc/bash-completion/README.md for more information. ===== Message from trousers-0.3.14_3: -- To run tcsd automatically, add the following line to /etc/rc.conf: tcsd_enable="YES" You might want to edit /usr/local/etc/tcsd.conf to reflect your setup. If you want to use tcsd with software TPM emulator, use the following configuration in /etc/rc.conf: tcsd_enable="YES" tcsd_mode="emulator" tpmd_enable="YES" To use TPM, add your_account to '_tss' group like following: # pw groupmod _tss -m your_account ===== Message from ghostscript9-agpl-base-9.52_11: -- This package installs a script named dvipdf that depends on dvips. If you want to use this script you need to install print/tex-dvipsk. ===== Message from dejavu-2.37_1: -- Make sure that the freetype module is loaded. If it is not, add the following line to the "Modules" section of your X Windows configuration file: Load "freetype" Add the following line to the "Files" section of X Windows configuration file: FontPath "/usr/local/share/fonts/dejavu/" Note: your X Windows configuration file is typically /etc/X11/XF86Config if you are using XFree86, and /etc/X11/xorg.conf if you are using X.Org. ===> R-cran-sf-0.9.6 depends on package: R-cran-classInt>=0.4.1 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on package: R-cran-DBI>=0.8 - not found ===> Installing existing package /packages/All/R-cran-DBI-1.1.0_1.txz [head-powerpc64-default-job-16] Installing R-cran-DBI-1.1.0_1... [head-powerpc64-default-job-16] Extracting R-cran-DBI-1.1.0_1: .......... done ===> R-cran-sf-0.9.6 depends on package: R-cran-DBI>=0.8 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on package: R-cran-magrittr>0 - not found ===> Installing existing package /packages/All/R-cran-magrittr-1.5_4.txz [head-powerpc64-default-job-16] Installing R-cran-magrittr-1.5_4... [head-powerpc64-default-job-16] Extracting R-cran-magrittr-1.5_4: .......... done ===> R-cran-sf-0.9.6 depends on package: R-cran-magrittr>0 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on package: R-cran-Rcpp>=0.12.18 - not found ===> Installing existing package /packages/All/R-cran-Rcpp-1.0.5.txz [head-powerpc64-default-job-16] Installing R-cran-Rcpp-1.0.5... [head-powerpc64-default-job-16] Extracting R-cran-Rcpp-1.0.5: .......... done ===> R-cran-sf-0.9.6 depends on package: R-cran-Rcpp>=0.12.18 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on package: R-cran-units>=0.6.0 - not found ===> Installing existing package /packages/All/R-cran-units-0.6.7.txz [head-powerpc64-default-job-16] Installing R-cran-units-0.6.7... [head-powerpc64-default-job-16] `-- Installing udunits-2.2.26_2... [head-powerpc64-default-job-16] `-- Extracting udunits-2.2.26_2: .......... done [head-powerpc64-default-job-16] Extracting R-cran-units-0.6.7: .......... done ===> R-cran-sf-0.9.6 depends on package: R-cran-units>=0.6.0 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on file: /usr/local/bin/R - found ===> R-cran-sf-0.9.6 depends on executable: gfortran9 - found ===> R-cran-sf-0.9.6 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.7.3,1.txz [head-powerpc64-default-job-16] Installing pkgconf-1.7.3,1... [head-powerpc64-default-job-16] Extracting pkgconf-1.7.3,1: .......... done ===> R-cran-sf-0.9.6 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on file: /usr/local/bin/as - found =========================================================================== =======================<phase: lib-depends >============================ ===> R-cran-sf-0.9.6 depends on shared library: libgdal.so - not found ===> Installing existing package /packages/All/gdal-3.1.3_1.txz [head-powerpc64-default-job-16] Installing gdal-3.1.3_1... [head-powerpc64-default-job-16] `-- Installing giflib-5.2.1... [head-powerpc64-default-job-16] `-- Extracting giflib-5.2.1: .......... done [head-powerpc64-default-job-16] `-- Installing jasper-2.0.22... [head-powerpc64-default-job-16] | `-- Installing freeglut-3.0.0_2... [head-powerpc64-default-job-16] | | `-- Installing libGLU-9.0.1... [head-powerpc64-default-job-16] | | `-- Extracting libGLU-9.0.1: ...... done [head-powerpc64-default-job-16] | | `-- Installing libXi-1.7.10,1... [head-powerpc64-default-job-16] | | `-- Extracting libXi-1.7.10,1: .......... done [head-powerpc64-default-job-16] | `-- Extracting freeglut-3.0.0_2: .......... done [head-powerpc64-default-job-16] `-- Extracting jasper-2.0.22: .......... done [head-powerpc64-default-job-16] `-- Installing json-c-0.15_1... [head-powerpc64-default-job-16] `-- Extracting json-c-0.15_1: .......... done [head-powerpc64-default-job-16] `-- Installing libgeotiff-1.6.0... [head-powerpc64-default-job-16] | `-- Installing proj-6.3.1,1... [head-powerpc64-default-job-16] | | `-- Installing sqlite3-3.33.0_1,1... [head-powerpc64-default-job-16] | | `-- Installing libedit-3.1.20191231,1... [head-powerpc64-default-job-16] | | `-- Extracting libedit-3.1.20191231,1: .......... done [head-powerpc64-default-job-16] | | `-- Extracting sqlite3-3.33.0_1,1: .......... done [head-powerpc64-default-job-16] | `-- Extracting proj-6.3.1,1: .......... done [head-powerpc64-default-job-16] `-- Extracting libgeotiff-1.6.0: .......... done [head-powerpc64-default-job-16] `-- Installing qhull-7.2.1,1... [head-powerpc64-default-job-16] `-- Extracting qhull-7.2.1,1: .......... done [head-powerpc64-default-job-16] Extracting gdal-3.1.3_1: .......... done ===== Message from freeglut-3.0.0_2: -- Joystick support is untested and it is unknown if it works. Do not hesitate to contact x11@FreeBSD.org if this causes issues. ===> R-cran-sf-0.9.6 depends on shared library: libgdal.so - found (/usr/local/lib/libgdal.so) ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on shared library: libgeos.so - not found ===> Installing existing package /packages/All/geos-3.8.1.txz [head-powerpc64-default-job-16] Installing geos-3.8.1... [head-powerpc64-default-job-16] Extracting geos-3.8.1: .......... done ===> R-cran-sf-0.9.6 depends on shared library: libgeos.so - found (/usr/local/lib/libgeos.so) ===> Returning to build of R-cran-sf-0.9.6 ===> R-cran-sf-0.9.6 depends on shared library: libproj.so - found (/usr/local/lib/libproj.so) =========================================================================== =======================<phase: configure >============================ ===> Configuring for R-cran-sf-0.9.6 =========================================================================== =======================<phase: build >============================ =========================================================================== =======================<phase: run-depends >============================ ===> R-cran-sf-0.9.6 depends on package: R-cran-classInt>=0.4.1 - found ===> R-cran-sf-0.9.6 depends on package: R-cran-DBI>=0.8 - found ===> R-cran-sf-0.9.6 depends on package: R-cran-magrittr>0 - found ===> R-cran-sf-0.9.6 depends on package: R-cran-Rcpp>=0.12.18 - found ===> R-cran-sf-0.9.6 depends on package: R-cran-units>=0.6.0 - found ===> R-cran-sf-0.9.6 depends on file: /usr/local/bin/R - found ===> R-cran-sf-0.9.6 depends on executable: gfortran9 - found =========================================================================== =======================<phase: stage >============================ ===> Staging for R-cran-sf-0.9.6 ===> Generating temporary packing list * installing *source* package 'sf' ... ** package 'sf' successfully unpacked and MD5 sums checked ** using staged installation configure: CC: cc configure: CXX: c++ checking for gdal-config... /usr/local/bin/gdal-config checking gdal-config usability... yes configure: GDAL: 3.1.3 checking GDAL version >= 2.0.1... yes checking for gcc... cc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking gdal.h usability... yes checking gdal.h presence... yes checking for gdal.h... yes checking GDAL: linking with --libs only... yes checking GDAL: /usr/local/share/gdal/pcs.csv readable... no checking GDAL: checking whether PROJ is available for linking:... yes checking GDAL: checking whether PROJ is available fur running:... Segmentation fault (core dumped) no configure: error: OGRCoordinateTransformation() does not return a coord.trans: PROJ not available? ERROR: configuration failed for package 'sf' * removing '/wrkdirs/usr/ports/math/R-cran-sf/work/stage/usr/local/lib/R/library/sf' *** Error code 1 Stop. make: stopped in /usr/ports/math/R-cran-sf
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