From owner-freebsd-pkg-fallout@FreeBSD.ORG Thu Jun 5 21:19:39 2014 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 9B1D96AE for ; Thu, 5 Jun 2014 21:19:39 +0000 (UTC) Received: from beefy1.isc.freebsd.org (beefy1.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:38]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 758332B6E; Thu, 5 Jun 2014 21:19:39 +0000 (UTC) Received: from beefy1.isc.freebsd.org (localhost [127.0.0.1]) by beefy1.isc.freebsd.org (8.14.8/8.14.8) with ESMTP id s55LJdsJ004075; Thu, 5 Jun 2014 21:19:39 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Received: (from root@localhost) by beefy1.isc.freebsd.org (8.14.8/8.14.8/Submit) id s55LJccn002553; Thu, 5 Jun 2014 21:19:38 GMT (envelope-from pkg-fallout-builder@FreeBSD.org) Date: Thu, 5 Jun 2014 21:19:38 GMT From: pkg-fallout-builder@FreeBSD.org Message-Id: <201406052119.s55LJccn002553@beefy1.isc.freebsd.org> To: xmj@chaot.net Subject: [REL - 10i386-default][science/py-h5py] Failed for py27-h5py-2.2.1_2 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 05 Jun 2014 21:19:39 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: xmj@chaot.net Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/py-h5py/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Log URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-06-05_14h45m00s/logs/py27-h5py-2.2.1_2.log Build URL: http://beefy1.isc.freebsd.org/bulk/10i386-default/2014-06-05_14h45m00s Log: ====>> Building science/py-h5py build started at Thu Jun 5 21:19:05 UTC 2014 port directory: /usr/ports/science/py-h5py building for: FreeBSD 10i386-default-job-06 10.0-RELEASE-p3 FreeBSD 10.0-RELEASE-p3 i386 maintained by: xmj@chaot.net Makefile ident: $FreeBSD: head/science/py-h5py/Makefile 352854 2014-05-03 00:55:30Z sunpoet $ Poudriere version: 3.1-pre Host OSVERSION: 1100013 Jail OSVERSION: 1000510 ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1000510 UNAME_v=FreeBSD 10.0-RELEASE-p3 UNAME_r=10.0-RELEASE-p3 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/build/10i386-default/ref PKG_EXT=txz tpid=43722 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=py27-h5py-2.2.1_2 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add OLDPWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/rdeps PWD=/usr/local/poudriere/data/build/10i386-default/ref/poudriere/pool MASTERNAME=10i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-h5py-2.2.1_2: DOCS=on: Build and/or install documentation EXAMPLES=on: Build and/or install examples ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" PYTHON="/usr/local/bin/python2.7" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd10 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VERSION=python2.7 OSREL=10.0 PREFIX=%D LOCALBASE=/usr/local PORTDOCS="" PORTEXAMPLES="" PORTDATA="" LIB32DIR=lib DOCSDIR="share/doc/h5py" EXAMPLESDIR="share/examples/h5py" DATADIR="share/h5py" WWWDIR="www/h5py" ETCDIR="etc/h5py" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/h5py DOCSDIR=/usr/local/share/doc/h5py EXAMPLESDIR=/usr/local/share/examples/h5py WWWDIR=/usr/local/www/h5py ETCDIR=/usr/local/etc/h5py --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes # clean-restricted via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for py27-h5py-2.2.1_2 =================================================== ===> License BSD accepted by the user =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.2.7_2.txz Installing pkg-1.2.7_2... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of py27-h5py-2.2.1_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building => SHA256 Checksum OK for h5py-2.2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License BSD accepted by the user ===> Fetching all distfiles required by py27-h5py-2.2.1_2 for building ===> Extracting for py27-h5py-2.2.1_2 => SHA256 Checksum OK for h5py-2.2.1.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py27-h5py-2.2.1_2 ===> Applying FreeBSD patches for py27-h5py-2.2.1_2 /usr/bin/sed -i.bak -e 's|%%LOCALBASE%%|/usr/local|' /wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/setup.py =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Verifying install for /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py in /usr/ports/math/py-numpy ===> Installing existing package /packages/All/py27-numpy-1.8.1,1.txz Installing py27-numpy-1.8.1,1...Installing blas-3.4.2_2...Installing gcc-4.7.3_1...Installing binutils-2.24...Installing gettext-0.18.3.1_1... done done Installing gcc-ecj-4.5... done Installing gmp-5.1.3_2... done Installing mpc-1.0.2...Installing mpfr-3.1.2_2... done done done done Installing lapack-3.4.2_2... done Installing py27-nose-1.3.0_1...Installing py27-setuptools27-2.0.1...Installing python27-2.7.6_4... done done done Installing suitesparse-4.0.2_3... done done To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ==== Note that some of the standard modules are provided as separate ports since they require extra dependencies: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Install them as needed. ==== ===> Returning to build of py27-h5py-2.2.1_2 ===> py27-h5py-2.2.1_2 depends on package: py27-setuptools27>0 - found ===> py27-h5py-2.2.1_2 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =================================================== ===> py27-h5py-2.2.1_2 depends on shared library: libhdf5.so - not found ===> Verifying for libhdf5.so in /usr/ports/science/hdf5 ===> Installing existing package /packages/All/hdf5-1.8.13_1.txz Installing hdf5-1.8.13_1... done ===> Returning to build of py27-h5py-2.2.1_2 =========================================================================== =================================================== ===> Configuring for py27-h5py-2.2.1_2 Cython not present; building for HDF5 1.8.4+ running config =========================================================================== =================================================== ===> Building for py27-h5py-2.2.1_2 Cython not present; building for HDF5 1.8.4+ running build running build_py creating build creating build/lib.freebsd-10.0-RELEASE-p3-i386-2.7 creating build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/ipy_completer.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/__init__.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/version.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/highlevel.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py creating build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/group.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/files.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/__init__.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/dataset.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/base.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/datatype.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/selections.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/filters.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/selections2.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/dims.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl copying h5py/_hl/attrs.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl creating build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_file.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/common.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/__init__.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_base.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_attrs.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_group.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_dataset.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_datatype.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_attrs_data.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_dimension_scales.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_slicing.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests copying h5py/_hl/tests/test_selections.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_hl/tests creating build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/test_h5f.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/__init__.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/test_h5.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/test_objects.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/test_h5t.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/lowtest/test_h5p.py -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/lowtest copying h5py/h5s.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/_errors.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/defs.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5d.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5ac.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5r.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/utils.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5l.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5z.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5o.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/_conv.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5p.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5i.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5g.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5ds.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5f.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5fd.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/_proxy.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5t.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5a.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/h5.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py copying h5py/_objects.pyx -> build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py running build_ext building 'h5py.defs' extension creating build/temp.freebsd-10.0-RELEASE-p3-i386-2.7 creating build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/defs.c -o build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/defs.o In file included from h5py/defs.c:259: In file included from h5py/api_compat.h:21: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ h5py/defs.c:21462:98: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] __pyx_t_8 = H5Lunpack_elink_val(__pyx_v_ext_linkval, __pyx_v_link_size, __pyx_v_flags, __pyx_v_filename, __pyx_v_obj_path); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L7_error;} ^~~~~~~~~~~~~~~~ /usr/local/include/H5Lpublic.h:194:34: note: passing argument to parameter 'filename' here unsigned *flags, const char **filename/*out*/, const char **obj_path /*out*/); ^ h5py/defs.c:21462:116: warning: passing 'char **' to parameter of type 'const char **' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] __pyx_t_8 = H5Lunpack_elink_val(__pyx_v_ext_linkval, __pyx_v_link_size, __pyx_v_flags, __pyx_v_filename, __pyx_v_obj_path); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 780; __pyx_clineno = __LINE__; goto __pyx_L7_error;} ^~~~~~~~~~~~~~~~ /usr/local/include/H5Lpublic.h:194:64: note: passing argument to parameter 'obj_path' here unsigned *flags, const char **filename/*out*/, const char **obj_path /*out*/); ^ h5py/defs.c:31308:95: warning: passing 'char **' to parameter of type 'const char *const *' discards qualifiers in nested pointer types [-Wincompatible-pointer-types-discards-qualifiers] __pyx_t_8 = H5Pset_fapl_multi(__pyx_v_fapl_id, __pyx_v_memb_map, __pyx_v_memb_fapl, __pyx_v_memb_name, __pyx_v_memb_addr, __pyx_v_relax); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1167; __pyx_clineno = __LINE__; goto __pyx_L7_error;} ^~~~~~~~~~~~~~~~~ /usr/local/include/H5FDmulti.h:37:49: note: passing argument to parameter 'memb_name' here const hid_t *memb_fapl, const char * const *memb_name, ^ h5py/defs.c:31766:74: warning: passing 'int *' to parameter of type 'size_t *' (aka 'unsigned int *') converts between pointers to integer types with different sign [-Wpointer-sign] __pyx_t_8 = H5Pget_cache(__pyx_v_plist_id, __pyx_v_mdc_nelmts, __pyx_v_rdcc_nelmts, __pyx_v_rdcc_nbytes, __pyx_v_rdcc_w0); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1185; __pyx_clineno = __LINE__; goto __pyx_L7_error;} ^~~~~~~~~~~~~~~~~~~ /usr/local/include/H5Ppublic.h:314:16: note: passing argument to parameter 'rdcc_nslots' here size_t *rdcc_nslots/*out*/, ^ h5py/defs.c:51217:94: warning: incompatible pointer types passing 'hsize_t **' (aka 'unsigned long long **') to parameter of type 'const hsize_t *' (aka 'const unsigned long long *'); dereference with * [-Wincompatible-pointer-types] __pyx_t_8 = H5Sselect_elements(__pyx_v_space_id, __pyx_v_op, __pyx_v_num_elements, __pyx_v_coord); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[1]; __pyx_lineno = 1950; __pyx_clineno = __LINE__; goto __pyx_L7_error;} ^~~~~~~~~~~~~ * /usr/local/include/H5Spublic.h:129:37: note: passing argument to parameter 'coord' here size_t num_elem, const hsize_t *coord); ^ 6 warnings generated. cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/defs.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/defs.so building 'h5py._errors' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_errors.c -o build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_errors.o In file included from h5py/_errors.c:259: In file included from h5py/api_compat.h:21: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ h5py/_errors.c:631:13: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] __pyx_t_3 = (__pyx_v_desc[0]).desc; ^ ~~~~~~~~~~~~~~~~~~~~~~ h5py/_errors.c:839:13: warning: assigning to 'char *' from 'const char *' discards qualifiers [-Wincompatible-pointer-types-discards-qualifiers] __pyx_t_6 = __pyx_v_err.err.desc; ^ ~~~~~~~~~~~~~~~~~~~~ h5py/_errors.c:1169:28: warning: incompatible pointer types passing 'herr_t (FILE *)' to parameter of type 'H5E_auto1_t' (aka 'herr_t (*)(void *)') [-Wincompatible-pointer-types] __pyx_t_1 = (H5Eset_auto(H5Eprint, stderr) < 0); ^~~~~~~~ /usr/local/include/H5version.h:228:18: note: expanded from macro 'H5Eprint' #define H5Eprint H5Eprint1 ^~~~~~~~~ /usr/local/include/H5Epublic.h:216:40: note: passing argument to parameter 'func' here H5_DLL herr_t H5Eset_auto1(H5E_auto1_t func, void *client_data); ^ 4 warnings generated. cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_errors.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_errors.so building 'h5py._objects' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_objects.c -o build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_objects.o In file included from h5py/_objects.c:259: In file included from h5py/api_compat.h:21: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ 1 warning generated. cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_objects.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_objects.so building 'h5py._proxy' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/_proxy.c -o build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_proxy.o In file included from h5py/_proxy.c:259: In file included from h5py/api_compat.h:21: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ h5py/_proxy.c:2383:95: warning: incompatible pointer types passing 'herr_t (void *, hid_t, unsigned int, hsize_t *, void *)' to parameter of type 'H5D_operator_t' (aka 'herr_t (*)(void *, hid_t, unsigned int, const hsize_t *, void *)') [-Wincompatible-pointer-types] __pyx_t_3 = __pyx_f_4h5py_4defs_H5Diterate(__pyx_v_noncontig, __pyx_v_tid, __pyx_v_space, __pyx_f_4h5py_6_proxy_h5py_scatter_cb, (&__pyx_v_info)); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 283; __pyx_clineno = __LINE__; goto __pyx_L1_error;} ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ h5py/_proxy.c:2404:95: warning: incompatible pointer types passing 'herr_t (void *, hid_t, unsigned int, hsize_t *, void *)' to parameter of type 'H5D_operator_t' (aka 'herr_t (*)(void *, hid_t, unsigned int, const hsize_t *, void *)') [-Wincompatible-pointer-types] __pyx_t_3 = __pyx_f_4h5py_4defs_H5Diterate(__pyx_v_noncontig, __pyx_v_tid, __pyx_v_space, __pyx_f_4h5py_6_proxy_h5py_gather_cb, (&__pyx_v_info)); if (unlikely(PyErr_Occurred())) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 285; __pyx_clineno = __LINE__; goto __pyx_L1_error;} ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 3 warnings generated. cc -shared -O2 -pipe -fno-strict-aliasing build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_proxy.o -L/usr/local/lib -Wl,-rpath=/usr/local/lib -lhdf5 -lhdf5_hl -o build/lib.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/_proxy.so building 'h5py.h5fd' extension cc -DNDEBUG -O2 -pipe -fno-strict-aliasing -fPIC -DH5_USE_16_API -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/wrkdirs/usr/ports/science/py-h5py/work/h5py-2.2.1/lzf -I/usr/local/include -I/usr/local/include/python2.7 -c h5py/h5fd.c -o build/temp.freebsd-10.0-RELEASE-p3-i386-2.7/h5py/h5fd.o In file included from h5py/h5fd.c:259: In file included from h5py/api_compat.h:21: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:17: In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1761: /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:15:2: warning: "Using deprecated NumPy API, disable it by " "#defining NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings] #warning "Using deprecated NumPy API, disable it by " \ ^ h5py/h5fd.c:857:39: error: use of undeclared identifier 'H5FD_MPIPOSIX' __pyx_t_1 = __Pyx_PyInt_to_py_hid_t(H5FD_MPIPOSIX); if (unlikely(!__pyx_t_1)) {__pyx_filename = __pyx_f[0]; __pyx_lineno = 34; __pyx_clineno = __LINE__; goto __pyx_L1_error;} ^ 1 warning and 1 error generated. error: command 'cc' failed with exit status 1 *** Error code 1 Stop. make: stopped in /usr/ports/science/py-h5py ===> Cleaning for py27-h5py-2.2.1_2