Date: Sun, 7 Jul 2019 12:05:37 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][biology/ncbi-blast+] Failed for ncbi-blast+-2.9.0 in build Message-ID: <201907071205.x67C5bAq063875@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: jwb@FreeBSD.org Last committer: jwb@FreeBSD.org Ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 504153 2019-06-14 00:37:59Z jwb $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p505658_s349589/logs/ncbi-blast+-2.9.0.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p505658_s349589 Log: =>> Building biology/ncbi-blast+ build started at Sun Jul 7 04:25:36 UTC 2019 port directory: /usr/ports/biology/ncbi-blast+ package name: ncbi-blast+-2.9.0 building for: FreeBSD head-armv6-default-job-15 13.0-CURRENT FreeBSD 13.0-CURRENT 1300034 arm maintained by: jwb@FreeBSD.org Makefile ident: $FreeBSD: head/biology/ncbi-blast+/Makefile 504153 2019-06-14 00:37:59Z jwb $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300018 Jail OSVERSION: 1300034 Job Id: 15 !!! Jail is newer than host. (Jail: 1300034, Host: 1300018) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300034 UNAME_v=FreeBSD 13.0-CURRENT 1300034 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- jwb@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- AR="ar cr" --without-boost --libdir=/usr/local/lib/ncbi-tools++ --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake ac_cv_path_PERL=/usr/local/bin/perl ac_cv_path_PERL_PATH=/usr/local/bin/perl PERL_USE_UNSAFE_INC=1 PYTHON="/usr/local/bin/python3.6" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- PERL_USE_UNSAFE_INC=1 XDG_DATA_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work HOME=/wrkdirs/usr/ports/biology/ncbi-blast+/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local CC="gcc8" CFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing " CPP="cpp8" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong -W l,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8 " LIBS="" CXX="g++8" CXXFLAGS="-O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.6m PYTHON_LIBDIR=lib/python3.6 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.6/site-packages PYTHON_SUFFIX=36 PYTHON_VER=3.6 PYTHON_VERSION=python3.6 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib PERL_VERSION=5.28.2 PERL_VER=5.28 PERL5_MAN1=lib/perl5/site_perl/man/man1 PERL5_MAN3=lib/perl5/site_perl/man/man3 SITE_PERL=lib/perl5/site_perl SITE_ARCH=lib/perl5/site_perl/mach/5.28 DOCSDIR="share/doc/ncbi-blast+" EXAMPLESDIR="share/examples/ncbi-blast+" DATADIR="share/ncbi-blast+" WWWDIR="www/ncbi-blast+" ETCDIR="etc/ncbi-blast+" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/ncbi-blast+ DOCSDIR=/usr/local/share/doc/ncbi-blast+ EXAMPLESDIR=/usr/local/share/examples/ncbi-blast+ WWWDIR=/usr/local/www/ncbi-blast+ ETCDIR=/usr/local/etc/ncbi-blast+ --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.1 (branches/release_80 363030) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.1 (branches/release_80 363030) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.1 (branches/release_80 363030) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300034 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License PD accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> ncbi-blast+-2.9.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.11.1.txz [head-armv6-default-job-15] Installing pkg-1.11.1... [head-armv6-default-job-15] Extracting pkg-1.11.1: .......... done ===> ncbi-blast+-2.9.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of ncbi-blast+-2.9.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License PD accepted by the user <snip> /bin/rm -f libvariation.a .libvariation.a.stamp ar cr libvariation.a variation__.o variation___.o /bin/sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/if_diff.sh /bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib /bin/ln -f libvariation.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libvariation.a /bin/ln -f .variation.dep /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.variation.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/variation' /usr/local/bin/gmake -C macro -w all_r || exit 5 gmake[4]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /bin/mkdir -p `/usr/bin/dirname /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in` test -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in || /bin/cp -p /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.in.skel /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/unit_test/Makefile.in /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/scripts/common/impl/update_configurable.sh /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT unit_test/Makefile config.status: creating /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro/unit_test/Makefile cd /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro && /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/new_module.sh macro all Platform not defined for FreeBSD arm -- please fix me /usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro TMPL=macro -w export-headers gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[5]: Nothing to be done for 'export-headers'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /usr/local/bin/gmake -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.lib.tmpl srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro TMPL=macro -w all /usr/local/bin/gmake -w -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.module MODULE=macro MODULE_PATH=objects/macro MODULE_ASN=macro.asn MODULE_IMPORT='' IMPDEPS='' IMPFILES='' top_srcdir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++ builddir=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build DATATOOL=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/bin/datatool DATATOOL_WRAPPER='' MODULE_SEARCH=/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src all gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' gmake[5]: Nothing to be done for 'all'. gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro' In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_WholeWordReplaceNocase(std::__cxx11::string&, const string&, const string&)': /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:61:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:74:103: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:76:91: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + 1, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp: In function 'bool ncbi::objects::s_ReplaceNocase(std::__cxx11::string&, const string&, const string&)': /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:88:84: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] size_t pos = NStr::Find(val, find, 0, string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:129: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/Replace_func.cpp:99:99: warning: 'static ncbi::SIZE_TYPE ncbi::NStr::Find(ncbi::CTempString, ncbi::CTempString, ncbi::SIZE_TYPE, ncbi::SIZE_TYPE, ncbi::NStr::EOccurrence, ncbi::NStr::ECase)' is deprecated [-Wdeprecated-declarations] pos = NStr::Find(val, find, pos + repl.length(), string::npos, NStr::eFirst, NStr::eNocase); ^ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistd.hpp:37, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/serial/serialbase.hpp:35, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action_.hpp:43, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/objects/macro/AECRParse_action.hpp:44, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/AECRParse_action.cpp:41, from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:2: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include/corelib/ncbistr.hpp:5212:11: note: declared here SIZE_TYPE NStr::Find(const CTempString str, const CTempString pattern, ^~~~ In file included from /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp:158: /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetConstraintString(ncbi::objects::CString_constraint::ECase) const': /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:479:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp: In member function 'ncbi::CTempString ncbi::objects::CString_constraint::x_GetCompareString(const ncbi::objects::CMatchString&, ncbi::objects::CString_constraint::ECase) const': /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/String_constraint.cpp:513:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ qemu: uncaught target signal 11 (Segmentation fault) - core dumped g++8: internal compiler error: Segmentation fault signal terminated program cc1plus Please submit a full bug report, with preprocessed source if appropriate. See <https://gcc.gnu.org/bugs/>; for instructions. gmake[5]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/Makefile.rules:88: macro__.o] Error 4 gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro___.cpp. Updating dependency information for /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp. /usr/local/bin/g++8 -std=gnu++11 -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -pipe -fstack-protector-strong -Wl,-rpath=/usr/local/lib/gcc8 -Wl,-rpath=/usr/local/lib/gcc8 -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_MT -D_REENTRANT -D_THREAD_SAFE -D__RUNETYPE_INTERNAL -D__RUNETYPE_INTERNAL -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/inc -I/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/include /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/objects/macro/macro__.cpp -o macro__.o gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' FAILED: src/objects/macro/Makefile.macro.lib gmake[5]: Entering directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' /bin/rm -f libmacro.a .macro.dep .libmacro.a.stamp /bin/rm -f /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmacro.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.macro.dep \ /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/lib/libmacro-static.a /wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/status/.macro-static.dep gmake[5]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[4]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_l:318: all.nonusr] Error 2 gmake[4]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects/macro' gmake[3]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build/objects' gmake[2]: *** [/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/src/build-system/Makefile.meta_r:41: all_r.real] Error 5 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++/ReleaseMT/build' gmake[1]: *** [Makefile:24: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/ncbi-blast+/work/ncbi-blast-2.9.0+-src/c++' *** Error code 1 Stop. make: stopped in /usr/ports/biology/ncbi-blast+
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