From owner-freebsd-pkg-fallout@FreeBSD.ORG Fri Nov 15 05:15:14 2013 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 9DCCAB9B for ; Fri, 15 Nov 2013 05:15:14 +0000 (UTC) Received: from beefy1.isc.freebsd.org (beefy1.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:38]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id 88CC92A1A; Fri, 15 Nov 2013 05:15:14 +0000 (UTC) Received: from beefy1.isc.freebsd.org (localhost [127.0.0.1]) by beefy1.isc.freebsd.org (8.14.7/8.14.7) with ESMTP id rAF5FE7x065630; Fri, 15 Nov 2013 05:15:14 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy1.isc.freebsd.org (8.14.7/8.14.7/Submit) id rAF5FEqt065601; Fri, 15 Nov 2013 05:15:14 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 15 Nov 2013 05:15:14 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201311150515.rAF5FEqt065601@beefy1.isc.freebsd.org> To: fbsd-ports@opsec.eu Subject: [REL - head-i386-default][biology/seqtools] Failed for seqtools-4.22 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.16 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 15 Nov 2013 05:15:14 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: fbsd-ports@opsec.eu Last committer: wg@FreeBSD.org Ident: $FreeBSD: head/biology/seqtools/Makefile 333374 2013-11-10 11:01:02Z wg $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-11-14_17h20m57s/logs/seqtools-4.22.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-11-14_17h20m57s Log: ====>> Building biology/seqtools build started at Fri Nov 15 05:14:01 UTC 2013 port directory: /usr/ports/biology/seqtools building for: FreeBSD head-i386-default-job-11 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 i386 maintained by: fbsd-ports@opsec.eu Makefile ident: $FreeBSD: head/biology/seqtools/Makefile 333374 2013-11-10 11:01:02Z wg $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100000 UNAME_v=FreeBSD 11.0-CURRENT r256430 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=74158 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=seqtools-4.22 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root/poudriere MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" PKG_CONFIG=pkgconf SHELL=/bin/sh CONFIG_SHELL=/bin/sh ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="gcc46" CFLAGS="-I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46" CPP="cpp46" CPPFLAGS="" LDFLAGS="-L/usr/local/lib -lexecinfo -lcurl -Wl,-rpath=/usr/local/lib/gcc46" CXX="g++46" CXXFLAGS="-I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -Wl,-rpath=/usr/local/lib/gcc46" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g w heel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/seqtools DOCSDIR=/usr/local/share/doc/seqtools EXAMPLESDIR=/usr/local/share/examples/seqtools WWWDIR=/usr/local/www/seqtools ETCDIR=/usr/local/etc/seqtools --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for seqtools-4.22 =================================================== =========================================================================== =================================================== ===> seqtools-4.22 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_8.txz Installing pkg-1.1.4_8... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of seqtools-4.22 =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user => seqtools-4.22.tar.gz doesn't seem to exist in /distfiles/. => Attempting to fetch ftp://ftp.sanger.ac.uk/pub4/resources/software/seqtools/PRODUCTION/seqtools-4.22.tar.gz seqtools-4.22.tar.gz 0 B 0 Bps ===> Fetching all distfiles required by seqtools-4.22 for building =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seqtools-4.22 for building => SHA256 Checksum OK for seqtools-4.22.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by seqtools-4.22 for building ===> Extracting for seqtools-4.22 => SHA256 Checksum OK for seqtools-4.22.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for seqtools-4.22 =========================================================================== =================================================== ===> seqtools-4.22 depends on executable: pkgconf - not found ===> Verifying install for pkgconf in /usr/ports/devel/pkgconf ===> Installing existing package /packages/All/pkgconf-0.9.3.txz Installing pkgconf-0.9.3... done ===> Returning to build of seqtools-4.22 ===> seqtools-4.22 depends on executable: gcc46 - not found ===> Verifying install for gcc46 in /usr/ports/lang/gcc ===> Installing existing package /packages/All/gcc-4.6.4.txz Installing gcc-4.6.4...Installing binutils-2.23.2...Installing gettext-0.18.3.1... done done Installing gcc-ecj-4.5... done Installing gmp-5.1.3... done Installing mpc-1.0.1...Installing mpfr-3.1.2... done done done ===> Returning to build of seqtools-4.22 ===> seqtools-4.22 depends on file: /usr/local/bin/as - found ===> seqtools-4.22 depends on file: /usr/local/bin/intltool-extract - not found ===> Verifying install for /usr/local/bin/intltool-extract in /usr/ports/textproc/intltool ===> Installing existing package /packages/All/intltool-0.50.2.txz Installing intltool-0.50.2...Installing p5-XML-Parser-2.41_1...Installing expat-2.1.0... done Installing perl5-5.16.3_2...Removing /usr/local/etc/perl5_version... Done. Creating /usr/local/etc/perl5_version... Done. Removing stale symlinks from /usr/bin... Skipping /usr/bin/perl Skipping /usr/bin/perl5 Done. Creating various symlinks in /usr/bin... Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl Symlinking /usr/local/bin/perl5.16.3 to /usr/bin/perl5 Done. done done done ===> Returning to build of seqtools-4.22 =========================================================================== =================================================== ===> seqtools-4.22 depends on shared library: libcurl.so - not found ===> Verifying for libcurl.so in /usr/ports/ftp/curl ===> Installing existing package /packages/All/curl-7.33.0_1.txz Installing curl-7.33.0_1...Installing ca_root_nss-3.15.2_1... done done ===> Returning to build of seqtools-4.22 ===> seqtools-4.22 depends on shared library: libexecinfo.so - found ===> seqtools-4.22 depends on shared library: libatk-1.0.so - not found ===> Verifying for libatk-1.0.so in /usr/ports/accessibility/atk ===> Installing existing package /packages/All/atk-2.8.0.txz Installing atk-2.8.0...Installing gnomehier-3.0... done Installing python27-2.7.5_4... done Installing python2-2_1... done Installing python-2.7_1,2... done Installing pcre-8.33... done Installing libffi-3.0.13... done Installing glib-2.36.3...No schema files found: doing nothing. done done ==== Note that some of the standard modules are provided as separate ports since they require extra dependencies: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter Install them as needed. ==== ===> Returning to build of seqtools-4.22 ===> seqtools-4.22 depends on shared library: libglib-2.0.so - found ===> seqtools-4.22 depends on shared library: libpcre.so - found ===> seqtools-4.22 depends on shared library: libgtk-x11-2.0.so - not found ===> Verifying for libgtk-x11-2.0.so in /usr/ports/x11-toolkits/gtk20 ===> Installing existing package /packages/All/gtk2-2.24.19_2.txz Installing gtk2-2.24.19_2...Installing xproto-7.0.24... done Installing xineramaproto-1.2.1... done Installing xextproto-7.2.1... done Installing xcb-util-renderutil-0.3.8...Installing libXau-1.0.8... done Installing libXdmcp-1.1.1... done Installing libpthread-stubs-0.3_4... done Installing libxcb-1.9.1...Installing libxml2-2.8.0_2... done done ===> seqtools-4.22 depends on shared library: libpango-1.0.so - found =========================================================================== =================================================== ===> Configuring for seqtools-4.22 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.22/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.22/configure configure: loading site script /usr/ports/Templates/config.site checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether g++46 accepts -g... yes checking for style of include used by make... GNU checking dependency style of g++46... gcc3 checking for gcc... gcc46 checking whether we are using the GNU C compiler... yes checking whether gcc46 accepts -g... yes checking for gcc46 option to accept ISO C89... none needed checking dependency style of gcc46... gcc3 checking how to run the C preprocessor... cpp46 checking whether ln -s works... yes checking whether make sets $(MAKE)... (cached) yes checking for ranlib... /usr/local/bin/ranlib checking for glib-genmarshal... glib-genmarshal checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for arpa/inet.h... (cached) yes checking for netdb.h... (cached) yes checking for netinet/in.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for sys/socket.h... (cached) yes checking for unistd.h... (cached) yes checking gtk.h usability... no checking gtk.h presence... no checking for gtk.h... no checking for pid_t... (cached) yes checking for size_t... (cached) yes checking for vfork.h... (cached) no checking for fork... (cached) yes checking for vfork... (cached) yes checking for working fork... yes checking for working vfork... (cached) yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... (cached) yes checking for dup2... (cached) yes checking for floor... no checking for gethostbyname... (cached) yes checking for memset... (cached) yes checking for socket... yes checking for sqrt... no checking for strcasecmp... (cached) yes checking for strchr... yes checking for strcspn... (cached) yes checking for strerror... (cached) yes checking for strncasecmp... (cached) yes checking for strrchr... yes checking for strstr... yes checking for strtol... (cached) yes checking for uname... (cached) yes checking pkg-config is at least version 0.9.0... yes checking for DEPS... yes checking curl/curl.h usability... yes checking curl/curl.h presence... yes checking for curl/curl.h... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands ------------------------------------------------- SeqTools Version 4.22 Prefix: '/usr/local' Compiler: 'gcc46 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 ' Now type 'make []' where the optional [] is: all - build all binaries (default) install - build and install everything - build specific program ------------------------------------------------- =========================================================================== =================================================== ===> Building for seqtools-4.22 /usr/bin/make all-am gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT utilities.o -MD -MP -MF .deps/utilities.Tpo -c -o utilities.o `test -f './seqtoolsUtils/utilities.c' || echo './'`./seqtoolsUtils/utilities.c mv -f .deps/utilities.Tpo .deps/utilities.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT blxmsp.o -MD -MP -MF .deps/blxmsp.Tpo -c -o blxmsp.o `test -f './seqtoolsUtils/blxmsp.c' || echo './'`./seqtoolsUtils/blxmsp.c mv -f .deps/blxmsp.Tpo .deps/blxmsp.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT translate.o -MD -MP -MF .deps/translate.Tpo -c -o translate.o `test -f './seqtoolsUtils/translate.c' || echo './'`./seqtoolsUtils/translate.c mv -f .deps/translate.Tpo .deps/translate.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT seqtoolsWebBrowser.o -MD -MP -MF .deps/seqtoolsWebBrowser.Tpo -c -o seqtoolsWebBrowser.o `test -f './seqtoolsUtils/seqtoolsWebBrowser.c' || echo './'`./seqtoolsUtils/seqtoolsWebBrowser.c mv -f .deps/seqtoolsWebBrowser.Tpo .deps/seqtoolsWebBrowser.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT blxGff3Parser.o -MD -MP -MF .deps/blxGff3Parser.Tpo -c -o blxGff3Parser.o `test -f './seqtoolsUtils/blxGff3Parser.c' || echo './'`./seqtoolsUtils/blxGff3Parser.c mv -f .deps/blxGff3Parser.Tpo .deps/blxGff3Parser.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT blxparser.o -MD -MP -MF .deps/blxparser.Tpo -c -o blxparser.o `test -f './seqtoolsUtils/blxparser.c' || echo './'`./seqtoolsUtils/blxparser.c mv -f .deps/blxparser.Tpo .deps/blxparser.Po rm -f libSeqtoolsUtils.a ar cru libSeqtoolsUtils.a utilities.o blxmsp.o translate.o seqtoolsWebBrowser.o blxGff3Parser.o blxparser.o /usr/local/bin/ranlib libSeqtoolsUtils.a gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT libpfetch-utils.o -MD -MP -MF .deps/libpfetch-utils.Tpo -c -o libpfetch-utils.o `test -f './libpfetch/libpfetch-utils.c' || echo './'`./libpfetch/libpfetch-utils.c mv -f .deps/libpfetch-utils.Tpo .deps/libpfetch-utils.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT libpfetch.o -MD -MP -MF .deps/libpfetch.Tpo -c -o libpfetch.o `test -f './libpfetch/libpfetch.c' || echo './'`./libpfetch/libpfetch.c mv -f .deps/libpfetch.Tpo .deps/libpfetch.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT libpfetch-cmarshal.o -MD -MP -MF .deps/libpfetch-cmarshal.Tpo -c -o libpfetch-cmarshal.o `test -f './libpfetch/libpfetch-cmarshal.c' || echo './'`./libpfetch/libpfetch-cmarshal.c mv -f .deps/libpfetch-cmarshal.Tpo .deps/libpfetch-cmarshal.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT libcurlobject.o -MD -MP -MF .deps/libcurlobject.Tpo -c -o libcurlobject.o `test -f './libpfetch/libcurlobject.c' || echo './'`./libpfetch/libcurlobject.c mv -f .deps/libcurlobject.Tpo .deps/libcurlobject.Po rm -f libpfetch.a ar cru libpfetch.a libpfetch-utils.o libpfetch.o libpfetch-cmarshal.o libcurlobject.o libpfetch-cmarshal.o /usr/local/bin/ranlib libpfetch.a gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT sequencecellrenderer.o -MD -MP -MF .deps/sequencecellrenderer.Tpo -c -o sequencecellrenderer.o `test -f './blixemApp/sequencecellrenderer.c' || echo './'`./blixemApp/sequencecellrenderer.c mv -f .deps/sequencecellrenderer.Tpo .deps/sequencecellrenderer.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT bigpicture.o -MD -MP -MF .deps/bigpicture.Tpo -c -o bigpicture.o `test -f './blixemApp/bigpicture.c' || echo './'`./blixemApp/bigpicture.c mv -f .deps/bigpicture.Tpo .deps/bigpicture.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT bigpicturegrid.o -MD -MP -MF .deps/bigpicturegrid.Tpo -c -o bigpicturegrid.o `test -f './blixemApp/bigpicturegrid.c' || echo './'`./blixemApp/bigpicturegrid.c mv -f .deps/bigpicturegrid.Tpo .deps/bigpicturegrid.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT detailview.o -MD -MP -MF .deps/detailview.Tpo -c -o detailview.o `test -f './blixemApp/detailview.c' || echo './'`./blixemApp/detailview.c mv -f .deps/detailview.Tpo .deps/detailview.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT detailviewtree.o -MD -MP -MF .deps/detailviewtree.Tpo -c -o detailviewtree.o `test -f './blixemApp/detailviewtree.c' || echo './'`./blixemApp/detailviewtree.c mv -f .deps/detailviewtree.Tpo .deps/detailviewtree.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT blxwindow.o -MD -MP -MF .deps/blxwindow.Tpo -c -o blxwindow.o `test -f './blixemApp/blxwindow.c' || echo './'`./blixemApp/blxwindow.c mv -f .deps/blxwindow.Tpo .deps/blxwindow.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT exonview.o -MD -MP -MF .deps/exonview.Tpo -c -o exonview.o `test -f './blixemApp/exonview.c' || echo './'`./blixemApp/exonview.c mv -f .deps/exonview.Tpo .deps/exonview.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT coverageview.o -MD -MP -MF .deps/coverageview.Tpo -c -o coverageview.o `test -f './blixemApp/coverageview.c' || echo './'`./blixemApp/coverageview.c mv -f .deps/coverageview.Tpo .deps/coverageview.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT blxdotter.o -MD -MP -MF .deps/blxdotter.Tpo -c -o blxdotter.o `test -f './blixemApp/blxdotter.c' || echo './'`./blixemApp/blxdotter.c mv -f .deps/blxdotter.Tpo .deps/blxdotter.Po rm -f libBlixemApp.a ar cru libBlixemApp.a sequencecellrenderer.o bigpicture.o bigpicturegrid.o detailview.o detailviewtree.o blxwindow.o exonview.o coverageview.o blxdotter.o /usr/local/bin/ranlib libBlixemApp.a gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT greyramptool.o -MD -MP -MF .deps/greyramptool.Tpo -c -o greyramptool.o `test -f './dotterApp/greyramptool.c' || echo './'`./dotterApp/greyramptool.c mv -f .deps/greyramptool.Tpo .deps/greyramptool.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT alignmenttool.o -MD -MP -MF .deps/alignmenttool.Tpo -c -o alignmenttool.o `test -f './dotterApp/alignmenttool.c' || echo './'`./dotterApp/alignmenttool.c mv -f .deps/alignmenttool.Tpo .deps/alignmenttool.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT dotplot.o -MD -MP -MF .deps/dotplot.Tpo -c -o dotplot.o `test -f './dotterApp/dotplot.c' || echo './'`./dotterApp/dotplot.c mv -f .deps/dotplot.Tpo .deps/dotplot.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT dotter.o -MD -MP -MF .deps/dotter.Tpo -c -o dotter.o `test -f './dotterApp/dotter.c' || echo './'`./dotterApp/dotter.c mv -f .deps/dotter.Tpo .deps/dotter.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT dotterKarlin.o -MD -MP -MF .deps/dotterKarlin.Tpo -c -o dotterKarlin.o `test -f './dotterApp/dotterKarlin.c' || echo './'`./dotterApp/dotterKarlin.c mv -f .deps/dotterKarlin.Tpo .deps/dotterKarlin.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT seqtoolsExonView.o -MD -MP -MF .deps/seqtoolsExonView.Tpo -c -o seqtoolsExonView.o `test -f './dotterApp/seqtoolsExonView.c' || echo './'`./dotterApp/seqtoolsExonView.c mv -f .deps/seqtoolsExonView.Tpo .deps/seqtoolsExonView.Po rm -f libDotterApp.a ar cru libDotterApp.a greyramptool.o alignmenttool.o dotplot.o dotter.o dotterKarlin.o seqtoolsExonView.o /usr/local/bin/ranlib libDotterApp.a gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT belvu.o -MD -MP -MF .deps/belvu.Tpo -c -o belvu.o `test -f './belvuApp/belvu.c' || echo './'`./belvuApp/belvu.c mv -f .deps/belvu.Tpo .deps/belvu.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT belvuWindow.o -MD -MP -MF .deps/belvuWindow.Tpo -c -o belvuWindow.o `test -f './belvuApp/belvuWindow.c' || echo './'`./belvuApp/belvuWindow.c mv -f .deps/belvuWindow.Tpo .deps/belvuWindow.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT belvuAlignment.o -MD -MP -MF .deps/belvuAlignment.Tpo -c -o belvuAlignment.o `test -f './belvuApp/belvuAlignment.c' || echo './'`./belvuApp/belvuAlignment.c mv -f .deps/belvuAlignment.Tpo .deps/belvuAlignment.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT belvuTree.o -MD -MP -MF .deps/belvuTree.Tpo -c -o belvuTree.o `test -f './belvuApp/belvuTree.c' || echo './'`./belvuApp/belvuTree.c mv -f .deps/belvuTree.Tpo .deps/belvuTree.Po gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT belvuConsPlot.o -MD -MP -MF .deps/belvuConsPlot.Tpo -c -o belvuConsPlot.o `test -f './belvuApp/belvuConsPlot.c' || echo './'`./belvuApp/belvuConsPlot.c mv -f .deps/belvuConsPlot.Tpo .deps/belvuConsPlot.Po rm -f libBelvuApp.a ar cru libBelvuApp.a belvu.o belvuWindow.o belvuAlignment.o belvuTree.o belvuConsPlot.o /usr/local/bin/ranlib libBelvuApp.a gcc46 -DHAVE_CONFIG_H -I. -I/usr/local/include/gtk-2.0 -I/usr/local/include/gio-unix-2.0/ -I/usr/local/include/atk-1.0 -I/usr/local/include/cairo -I/usr/local/include/pixman-1 -D_THREAD_SAFE -I/usr/local/include/gdk-pixbuf-2.0 -I/usr/local/include/libpng15 -I/usr/local/include/pango-1.0 -pthread -I/usr/local/include/glib-2.0 -I/usr/local/include/freetype2 -I/usr/local/include -I/usr/local/include/harfbuzz -I. -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -MT dotterMain.o -MD -MP -MF .deps/dotterMain.Tpo -c -o dotterMain.o `test -f './dotterApp/dotterMain.c' || echo './'`./dotterApp/dotterMain.c mv -f .deps/dotterMain.Tpo .deps/dotterMain.Po gcc46 -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc46 -L. -L/usr/local/lib -lexecinfo -lcurl -Wl,-rpath=/usr/local/lib/gcc46 -o dotter dotterMain.o ./libSeqtoolsUtils.a ./libDotterApp.a -lgtk-x11-2.0 -lgdk-x11-2.0 -lpangocairo-1.0 -lXext -lXrender -lXinerama -lXi -lXrandr -lXcursor -lXcomposite -lXdamage -lXfixes -lX11 -latk-1.0 -lcairo -pthread -lgdk_pixbuf-2.0 -lgio-2.0 -lpangoft2-1.0 -lpango-1.0 -lgobject-2.0 -lglib-2.0 -lintl -lfontconfig -L/usr/local/lib -lfreetype -lSeqtoolsUtils -lDotterApp /usr/local/bin/ld: ./libSeqtoolsUtils.a(utilities.o): undefined reference to symbol 'ceil@@FBSD_1.0' /usr/local/bin/ld: note: 'ceil@@FBSD_1.0' is defined in DSO //lib/libm.so.5 so try adding it to the linker command line //lib/libm.so.5: could not read symbols: Invalid operation collect2: ld returned 1 exit status *** Error code 1 Stop. make[2]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.22 *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/seqtools/work/seqtools-4.22 *** Error code 1 Stop. make: stopped in /usr/ports/biology/seqtools ===> Cleaning for seqtools-4.22