From nobody Wed Dec 1 15:53:31 2021 X-Original-To: dev-commits-ports-main@mlmmj.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mlmmj.nyi.freebsd.org (Postfix) with ESMTP id DAF6A18BECAB; Wed, 1 Dec 2021 15:53:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "R3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4J43XW3fpMz3h8G; Wed, 1 Dec 2021 15:53:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org (gitrepo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:5]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 5A2A4486B; Wed, 1 Dec 2021 15:53:31 +0000 (UTC) (envelope-from git@FreeBSD.org) Received: from gitrepo.freebsd.org ([127.0.1.44]) by gitrepo.freebsd.org (8.16.1/8.16.1) with ESMTP id 1B1FrVrO018849; Wed, 1 Dec 2021 15:53:31 GMT (envelope-from git@gitrepo.freebsd.org) Received: (from git@localhost) by gitrepo.freebsd.org (8.16.1/8.16.1/Submit) id 1B1FrVrO018848; Wed, 1 Dec 2021 15:53:31 GMT (envelope-from git) Date: Wed, 1 Dec 2021 15:53:31 GMT Message-Id: <202112011553.1B1FrVrO018848@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: "Jason W. Bacon" Subject: git: 70e9e19c3cb7 - main - biology/biostar-tools: Allow package build on non-amd64 systems List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: jwb X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 70e9e19c3cb7a11ccfef63c91beaf291ea2fb366 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; t=1638374011; h=from:from:reply-to:subject:subject:date:date:message-id:message-id: to:to:cc:mime-version:mime-version:content-type:content-type: content-transfer-encoding:content-transfer-encoding; bh=PuM3X6C2mSpWeMv+F9oeZicDLcmzfxvHMDxOnPGTCJs=; b=tRdw57b8h+ryUS68olMCUZl0uQf294cgcpEprWN22ot3po1nCAGW6zN0ktgWEK7gE0yHP1 JWc4mzQmdufupeYXdUqva4b4NWx3byI4or4OaZGfFOStthLVG7dac08SH9CEcSEzej0AA0 WwRJqsafF4Rq3NIwWX3hD4XBwuVlvrNd5sNuVjdsHXPd6bzglS1/+ao85WdsFGDdmpBDh1 RshWe+9RkXC5NX3wR230HbcX8mBvbm4wuE7w6F1uriON96qzRzZgMra3ZhC3PolSjm1gwL rT/cFNSi2UgKT8Wk4HwD8RUhB7qDUryyZDPxIoruc1leivCmNi8Ruwzx5liw9w== ARC-Seal: i=1; s=dkim; d=freebsd.org; t=1638374011; a=rsa-sha256; cv=none; b=BoiRzzTPcccjIJIBVIQRiLwlXhbIz2Z/v+wdRxgQno6WnVN02awzyuGPC87XiAd4aBUgR5 HX3eCnECtzFgDyGWKLVRU4Khyoo+PxzD4gjMwL4SQaHNuZpfUS0Ul6KxtLAndE5w2HwCDm FG/uW5ejE9WxBdN2UR0NZuaVF0NByZhGjByrTYX4tX3qOQQRiTkgt5ye1oiicSFs6cDPUf PdCxKdrfov2me+yTUhVtNHizdwOh018/EldvIrEOJIqcJUrJuyd0BftWs2Jj7LzJOfuMwE bD8tPHCu0aJzJlJgVqfF8LfAAQLI08/NoHJvvnYhTXuWhaySXggLSGRlG4EiMg== ARC-Authentication-Results: i=1; mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by jwb: URL: https://cgit.FreeBSD.org/ports/commit/?id=70e9e19c3cb7a11ccfef63c91beaf291ea2fb366 commit 70e9e19c3cb7a11ccfef63c91beaf291ea2fb366 Author: Jason W. Bacon AuthorDate: 2021-12-01 15:49:28 +0000 Commit: Jason W. Bacon CommitDate: 2021-12-01 15:49:28 +0000 biology/biostar-tools: Allow package build on non-amd64 systems Only sra-tools is still non-portable, but it will take some time to add support for other architectures. In the meantime, allow aarch64 and powerpc64 users to have a biostar-tools package. --- biology/biostar-tools/Makefile | 12 +++++++++--- biology/biostar-tools/distinfo | 2 +- 2 files changed, 10 insertions(+), 4 deletions(-) diff --git a/biology/biostar-tools/Makefile b/biology/biostar-tools/Makefile index 912c9de70b84..8e23e40fd1b7 100644 --- a/biology/biostar-tools/Makefile +++ b/biology/biostar-tools/Makefile @@ -1,5 +1,5 @@ PORTNAME= biostar-tools -PORTVERSION= 1.10.0 +PORTVERSION= 1.10.1 CATEGORIES= biology python MAINTAINER= jwb@FreeBSD.org @@ -34,7 +34,6 @@ RUN_DEPENDS= wget>0:ftp/wget \ seqtk>0:biology/seqtk \ datamash>0:textproc/datamash \ bcftools>0:biology/bcftools \ - sra-tools>0:biology/sra-tools \ subread>0:biology/subread \ hisat2>0:biology/hisat2 \ trimmomatic>0:biology/trimmomatic \ @@ -68,6 +67,13 @@ RUN_DEPENDS= wget>0:ftp/wget \ USES= metaport python +.include + +# Allow pkg build on non-amd64 systems until sra-tools supports them +.if ${ARCH} == amd64 +RUN_DEPENDS+= sra-tools>0:biology/sra-tools +.endif + SUB_FILES= biostar-shell PLIST_FILES= bin/biostar-shell @@ -75,4 +81,4 @@ do-install: @${MKDIR} ${STAGEDIR}${PREFIX}/bin ${INSTALL_SCRIPT} ${WRKDIR}/biostar-shell ${STAGEDIR}${PREFIX}/bin -.include +.include diff --git a/biology/biostar-tools/distinfo b/biology/biostar-tools/distinfo index 6155e6419c60..2d706e980f0b 100644 --- a/biology/biostar-tools/distinfo +++ b/biology/biostar-tools/distinfo @@ -1 +1 @@ -TIMESTAMP = 1636577480 +TIMESTAMP = 1638373720