From owner-freebsd-x11@FreeBSD.ORG  Wed Jul 14 21:45:13 2010
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Date: Wed, 14 Jul 2010 15:44:29 -0600
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From: John Hein <jhein@symmetricom.com>
To: Chris Maness <chris@chrismaness.com>
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Cc: x11@freebsd.org
Subject: Re: libX11 Configure Script Failing During Build
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Chris Maness wrote at 12:23 -0700 on Jul 14, 2010:
 > On Wed, Jul 14, 2010 at 11:45 AM, John Hein <jhein@symmetricom.com> wrote:
...
 > > You have stale libtool15 files.
...
 > Can I just delete it?  (/usr/local/share/aclocal/libtool15.m4)

Yes (or rename), but there may be other stale files, too.
Look at the pkg-plist of the old libtool15 port.


 > I only use portupgrade with the -r flags to make sure all downstream
 > deps get updated as well.  However, if it is a common problem, maybe
 > there is a problem with deinstall removing all of the pertinent files.

I don't know the details, but it's probably something related to the
20090802 entry in ports/UPDATING.  I know you can shoot yourself in
the foot with portupgrade & pkgdb depending on how you answer
some of the prompts related to stale dependency checks and such.
This is more a question for ports@.