Date: Thu, 26 Mar 2020 05:59:03 GMT From: pkg-fallout@FreeBSD.org To: yuri@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][biology/cufflinks] Failed for cufflinks-2.2.1.83_2 in build Message-ID: <202003260559.02Q5x3Ot024056@beefy17.nyi.freebsd.org>
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Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/biology/cufflinks/Makefile 519824 2019-12-11 17:53:48Z jbeich $ Log URL: http://beefy17.nyi.freebsd.org/data/head-i386-default/p529158_s359311/logs/cufflinks-2.2.1.83_2.log Build URL: http://beefy17.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p529158_s359311 Log: =>> Building biology/cufflinks build started at Thu Mar 26 05:58:19 UTC 2020 port directory: /usr/ports/biology/cufflinks package name: cufflinks-2.2.1.83_2 building for: FreeBSD head-i386-default-job-09 13.0-CURRENT FreeBSD 13.0-CURRENT 1300085 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/biology/cufflinks/Makefile 519824 2019-12-11 17:53:48Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300076 Jail OSVERSION: 1300085 Job Id: 09 !!! Jail is newer than host. (Jail: 1300085, Host: 1300076) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1300085 UNAME_v=FreeBSD 13.0-CURRENT 1300085 UNAME_r=13.0-CURRENT BLOCKSIZE=K STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/cufflinks/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/cufflinks/work HOME=/wrkdirs/usr/ports/biology/cufflinks/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/biology/cufflinks/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing " CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -I/usr/local/include/eigen3 -fstack-protector-strong -fno-strict-aliasing -I/usr/local/include/eigen3 " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/cufflinks" EXAMPLESDIR="share/examples/cufflinks" DATADIR="share/cufflinks" WWWDIR="www/cufflinks" ETCDIR="etc/cufflinks" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cufflinks DOCSDIR=/usr/local/share/doc/cufflinks EXAMPLESDIR=/usr/local/share/examples/cufflinks WWWDIR=/usr/local/www/cufflinks ETCDIR=/usr/local/etc/cufflinks --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-m" "elf_i386_fbsd" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: i386-unknown-freebsd13.0 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=i386 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300085 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 524288 stack size (kbytes, -s) 65536 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License BSL accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> cufflinks-2.2.1.83_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.13.2.txz [head-i386-default-job-09] Installing pkg-1.13.2... [head-i386-default-job-09] Extracting pkg-1.13.2: .......... done ldconfig: aout support is deprecated ===> cufflinks-2.2.1.83_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of cufflinks-2.2.1.83_2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building =========================================================================== =======================<phase: checksum >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building => SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License BSL accepted by the user ===> Fetching all distfiles required by cufflinks-2.2.1.83_2 for building ===> Extracting for cufflinks-2.2.1.83_2 => SHA256 Checksum OK for cole-trapnell-lab-cufflinks-v2.2.1-83-gb4fa050_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for cufflinks-2.2.1.83_2 ===> Applying FreeBSD patches for cufflinks-2.2.1.83_2 =========================================================================== =======================<phase: build-depends >============================ ===> cufflinks-2.2.1.83_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - not found ===> Installing existing package /packages/All/eigen-3.3.7.txz [head-i386-default-job-09] Installing eigen-3.3.7... [head-i386-default-job-09] Extracting eigen-3.3.7: .......... done ===> cufflinks-2.2.1.83_2 depends on file: /usr/local/libdata/pkgconfig/eigen3.pc - found ===> Returning to build of cufflinks-2.2.1.83_2 <snip> ./GHash.hh:496:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ ./GHash.hh:553:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ In file included from clustering.cpp:10: In file included from ./clustering.h:38: In file included from ./abundances.h:23: ./hits.h:906:48: warning: field '_expression_file_name' will be initialized after field '_ifs' [-Wreorder-ctor] HitFactory(insert_table, reference_table), _expression_file_name(expression_file_name), _ifs(expression_file_name.c_str()), ^ In file included from clustering.cpp:10: In file included from ./clustering.h:38: In file included from ./abundances.h:25: In file included from ./bundles.h:24: In file included from ./gtf_tracking.h:12: In file included from ./gff.h:11: ./GHash.hh:90:5: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:168:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i,n,p,x,h; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:202:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:243:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:285:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,i,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:327:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:364:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:387:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int p,x,h,n; ^~~~~~~~~ ./GHash.hh:416:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:429:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:443:2: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCurrentEntry; ^~~~~~~~~ ./GHash.hh:461:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=0; ^~~~~~~~~ ./GHash.hh:469:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int pos=fCapacity-1; ^~~~~~~~~ ./GHash.hh:496:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ ./GHash.hh:553:3: warning: 'register' storage class specifier is deprecated and incompatible with C++17 [-Wdeprecated-register] register int i; ^~~~~~~~~ In file included from cufflinks.cpp:28: ./replicates.h:224:57: warning: unused variable 's2' [-Wunused-variable] const vector<boost::shared_ptr<Scaffold> >& s2 = bundles[i-1]->ref_scaffolds(); ^ cufflinks.cpp:693:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] bool ref_guided = (ref_scaffs != NULL); ^ cufflinks.cpp:690:5: note: previous statement is here if (bundle.hits().size() >= max_frags_per_bundle) ^ cufflinks.cpp:1279:2: warning: misleading indentation; statement is not part of the previous 'if' [-Wmisleading-indentation] if (!final_est_run && bundle_mode==REF_DRIVEN) // Bias needs to be learned ^ cufflinks.cpp:1275:5: note: previous statement is here if (allow_junk_filtering) ^ cufflinks.cpp:1176:17: warning: unused variable 'map_mass' [-Wunused-variable] long double map_mass = rg_props->normalized_map_mass(); ^ cufflinks.cpp:1522:3: error: reference to 'thread' is ambiguous thread asmbl(assemble_bundle, ^ /usr/include/c++/v1/__threading_support:605:24: note: candidate found by name lookup is 'std::__1::thread' class _LIBCPP_TYPE_VIS thread; ^ /usr/local/include/boost/thread/detail/thread.hpp:163:29: note: candidate found by name lookup is 'boost::thread' class BOOST_THREAD_DECL thread ^ In file included from clustering.cpp:10: In file included from ./clustering.h:38: In file included from ./abundances.h:25: In file included from ./bundles.h:16: In file included from /usr/local/include/boost/random.hpp:36: In file included from /usr/local/include/boost/random/additive_combine.hpp:27: /usr/local/include/boost/random/linear_congruential.hpp:140:20: warning: overlapping comparisons always evaluate to false [-Wtautological-overlap-compare] if(_x <= 0 && _x != 0) { ~~~~~~~~^~~~~~~~~~ /usr/local/include/boost/random/linear_congruential.hpp:393:11: note: in instantiation of member function 'boost::random::linear_congruential_engine<unsigned long long, 25214903917, 11, 281474976710656>::seed' requested here { lcf.seed(cnv(x0)); } ^ In file included from cufflinks.cpp:23: In file included from ./filters.h:18: ./genes.h:210:6: warning: private field '_id' is not used [-Wunused-private-field] int _id; ^ 47 warnings and 1 error generated. gmake[3]: *** [Makefile:1672: cufflinks.o] Error 1 gmake[3]: *** Waiting for unfinished jobs.... 42 warnings generated. mv -f .deps/clustering.Tpo .deps/clustering.Po gmake[3]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050/src' gmake[2]: *** [Makefile:400: all-recursive] Error 1 gmake[2]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050' gmake[1]: *** [Makefile:341: all] Error 2 gmake[1]: Leaving directory '/wrkdirs/usr/ports/biology/cufflinks/work/cufflinks-2.2.1-83-gb4fa050' ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/biology/cufflinks
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