Date: Sat, 14 Sep 2019 20:51:07 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/avogadrolibs] Failed for avogadrolibs-1.92.1_1 in build Message-ID: <201909142051.x8EKp7P5004450@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: gerald@FreeBSD.org Ident: $FreeBSD: head/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p511995_s351963/logs/avogadrolibs-1.92.1_1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p511995_s351963 Log: =>> Building science/avogadrolibs build started at Sat Sep 14 20:34:59 UTC 2019 port directory: /usr/ports/science/avogadrolibs package name: avogadrolibs-1.92.1_1 building for: FreeBSD head-armv6-default-job-07 13.0-CURRENT FreeBSD 13.0-CURRENT 1300046 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/avogadrolibs/Makefile 507372 2019-07-26 20:46:53Z gerald $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300031 Jail OSVERSION: 1300046 Job Id: 07 !!! Jail is newer than host. (Jail: 1300046, Host: 1300031) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300046 UNAME_v=FreeBSD 13.0-CURRENT 1300046 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= 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QT_IMPORTDIR="lib/qt5/imports" QT_QMLDIR="lib/qt5/qml" QT_DATADIR="share/qt5" QT_DOCDIR="share/doc/qt5" QT_L10NDIR="share/qt5/translations" QT_EXAMPLEDIR="share/examples/qt5" QT_TESTDIR="share/qt5/tests" QT_MKSPECDIR="lib/qt5/mkspecs" QT_QTCHOOSERDIR="etc/xdg/qtchooser" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/avogadrolibs" EXAMPLESDIR="share/examples/avogadrolibs" DATADIR="share/avogadrolibs" WWWDIR="www/avogadrolibs" ETCDIR="etc/avogadrolibs" --End PLIST_SUB-- --SUB_LIST-- HDF5="@comment " NO_HDF5="" LIBARCHIVE="" NO_LIBARCHIVE="@comment " LIBMSYM="" NO_LIBMSYM="@comment " MOLEQUEUE="" NO_MOLEQUEUE="@comment " OPENGL="" NO_OPENGL="@comment " QT5="" NO_QT5="@comment " SPGLIB="" NO_SPGLIB="@comment " VTK="@comment " NO_VTK="" PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/avogadrolibs DOCSDIR=/usr/local/share/doc/avogadrolibs EXAMPLESDIR=/usr/local/share/examples/avogadrolibs WWWDIR=/usr/local/www/avogadrolibs 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It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 # stable/10 includes src.conf too late but make.conf is in sys.mk .if ${.CURDIR:M/poudriere/jails/10*/usr/src/usr.bin/xlint*} # Disable build of llib now that head no longer has lint(1) LINT= true .endif #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 8.0.1 (tags/RELEASE_801/final 366581) (based on LLVM 8.0.1) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300046 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> avogadrolibs-1.92.1_1 depends on file: /usr/local/sbin/pkg - not found <snip> [81/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/version.cpp [82/458] /nxb-bin/usr/bin/c++ -DAvogadroCore_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -isystem /usr/local/include/eigen3 -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -MF avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o.d -o avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/core/avospglib.cpp [83/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroCore.so.1 -o lib/libAvogadroCore.so.1.92.0 avogadro/core/CMakeFiles/AvogadroCore.dir/coordinateblockgenerator.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/crystaltools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/cube.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/elements.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussianset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/gaussiansettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/graph.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mesh.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/molecule.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/mutex.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/na meatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/residue.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/ringperceiver.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slaterset.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/slatersettools.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/spacegroups.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/symbolatomtyper.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/unitcell.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/variantmap.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/version.cpp.o avogadro/core/CMakeFiles/AvogadroCore.dir/avospglib.cpp.o -Wl,-rpath,/usr/local/lib: /usr/local/lib/libsymspg.so && : [84/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroCore.so.1.92.0 lib/libAvogadroCore.so.1 lib/libAvogadroCore.so && : [85/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work /avogadrolibs-1.92.1/avogadro/io/cjsonformat.cpp [86/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga 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/wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/dcdformat.cpp [88/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.92.1/avogadro/io/fileformat.cpp [89/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o -c /wrkdirs/usr/ports/science /avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformatmanager.cpp:29: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [90/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolib s/work/avogadrolibs-1.92.1/avogadro/io/gromacsformat.cpp [91/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/mdlformat.cpp [92/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.92.1/avogadro/io/vaspformat.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:90:8: warning: 'read' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool read(std::istream& inStream, Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:126:16: note: overridden virtual function is here virtual bool read(std::istream& in, Core::Molecule& molecule) = 0; ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.cpp:17: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/vaspformat.h:91:8: warning: 'write' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] bool write(std::ostream& outStream, const Core::Molecule& mol); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/io/fileformat.h:134:16: note: overridden virtual function is here virtual bool write(std::ostream& out, const Core::Molecule& molecule) = 0; ^ 2 warnings generated. [93/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga 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/wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/xyzformat.cpp [95/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avoga drolibs-1.92.1/avogadro/io/trrformat.cpp [96/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/lammpsformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/w ork/avogadrolibs-1.92.1/avogadro/io/lammpsformat.cpp [97/458] /nxb-bin/usr/bin/c++ -DAVO_USE_MMTF -DAvogadroIO_EXPORTS -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -isystem /usr/local/include/eigen3 -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/pugixml -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty/struct -isystem /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/thirdparty -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -std=c++11 -MD -MT avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -MF avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o.d -o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/av ogadrolibs-1.92.1/avogadro/io/mmtfformat.cpp [98/458] : && /nxb-bin/usr/bin/c++ -fPIC -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fstack-protector-strong -shared -Wl,-soname,libAvogadroIO.so.1 -o lib/libAvogadroIO.so.1.92.0 avogadro/io/CMakeFiles/AvogadroIO.dir/cjsonformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/cmlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/dcdformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/fileformatmanager.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/gromacsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mdlformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/vaspformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/pdbformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/xyzformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/trrformat.cpp.o avogadro/io/CMakeFiles/Av ogadroIO.dir/lammpsformat.cpp.o avogadro/io/CMakeFiles/AvogadroIO.dir/mmtfformat.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib: lib/libAvogadroCore.so.1.92.0 thirdparty/struct/libstruct.a && : [99/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroIO.so.1.92.0 lib/libAvogadroIO.so.1 lib/libAvogadroIO.so && : [100/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/CMakeFiles/AvogadroQtGui_autogen.dir/AutogenInfo.cmake Release [101/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/ui_customelementdialog.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/customelementdialog.ui [102/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui && /usr/local/lib/qt5/bin/rcc --name qtgui --output /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtgui/qrc_qtgui.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtgui/qtgui.qrc [103/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o - MF avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/AvogadroQtGui_autogen/mocs_compilation.cpp.o -c avogadro/qtgui/AvogadroQtGui_autogen/mocs_compilation.cpp [104/458] /nxb-bin/usr/bin/c++ -DAvogadroLibs_LIB_DIR=\"lib\" -DAvogadroQtGui_EXPORTS -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_WIDGETS_LIB -DUSE_SPGLIB -Iavogadro/qtgui/AvogadroQtGui_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -std=c++11 -MD -MT avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -MF avogadro/qtgui/ CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o.d -o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/backgroundfileformat.cpp.o -c 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avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/extensionplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/filebrowsewidget.cpp.o a vogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/fileformatdialog.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/generichighlighter.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/hydrogentools.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacescript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/interfacewidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/meshgenerator.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/molecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/moleculemodel.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/multiviewwidget.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictablescene_p.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/periodictableview.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/pythonscript.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/rwmolecule.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/sceneplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/scenepluginmodel.cpp.o avogadro/qtgui/CMakeF iles/AvogadroQtGui.dir/scriptloader.cpp.o av! ogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/toolplugin.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/utilities.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/viewfactory.cpp.o avogadro/qtgui/CMakeFiles/AvogadroQtGui.dir/qrc_qtgui.cpp.o -Wl,-rpath,/wrkdirs/usr/ports/science/avogadrolibs/work/.build/lib:/usr/local/lib/qt5: lib/libAvogadroIO.so.1.92.0 /usr/local/lib/qt5/libQt5Widgets.so.5.12.2 lib/libAvogadroCore.so.1.92.0 /usr/local/lib/qt5/libQt5Gui.so.5.12.2 /usr/local/lib/qt5/libQt5Core.so.5.12.2 && : [133/458] /usr/local/bin/cmake -E cmake_symlink_library lib/libAvogadroQtGui.so.1.92.0 lib/libAvogadroQtGui.so.1 lib/libAvogadroQtGui.so && : [134/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene_autogen.dir/AutogenInfo.cmake Release [135/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/symmetry/SymmetryScene_autogen/mocs_compilation.cpp [136/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetryscene.cpp [137/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/SymmetryScene_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro /qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o -c avogadro/qtplugins/symmetry/SymmetryScenePlugin.cpp [138/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/SymmetryScene.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/SymmetryScene.a avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScene_autogen/mocs_compilation.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/symmetryscene.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/SymmetryScene.dir/SymmetryScenePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/SymmetryScene.a && : [139/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/CMakeFiles/Symmetry_autogen.dir/AutogenInfo.cmake Release [140/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry && /usr/local/lib/qt5/bin/uic -o /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/symmetry/ui_symmetrywidget.h /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetrywidget.ui [141/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/symmetry/Symmetry_autogen/mocs_compilation.cpp [142/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetry.cpp [143/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetrywidget.cpp [144/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/operationstablemodel.cpp [145/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp:25:3: warning: 'QStyleOptionViewItemV4' is deprecated [-Wdeprecated-declarations] QStyleOptionViewItemV4 ov4 = o; ^ /usr/local/include/qt5/QtWidgets/qstyleoption.h:453:9: note: 'QStyleOptionViewItemV4' has been explicitly marked deprecated here typedef Q_DECL_DEPRECATED QStyleOptionViewItem QStyleOptionViewItemV4; ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:233:45: note: expanded from macro 'Q_DECL_DEPRECATED' # define Q_DECL_DEPRECATED __attribute__ ((__deprecated__)) ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/richtextdelegate.cpp:36:3: warning: 'QStyleOptionViewItemV4' is deprecated [-Wdeprecated-declarations] QStyleOptionViewItemV4 ov4 = o; ^ /usr/local/include/qt5/QtWidgets/qstyleoption.h:453:9: note: 'QStyleOptionViewItemV4' has been explicitly marked deprecated here typedef Q_DECL_DEPRECATED QStyleOptionViewItem QStyleOptionViewItemV4; ^ /usr/local/include/qt5/QtCore/qcompilerdetection.h:233:45: note: expanded from macro 'Q_DECL_DEPRECATED' # define Q_DECL_DEPRECATED __attribute__ ((__deprecated__)) ^ 2 warnings generated. [146/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/symmetry/symmetryutil.cpp [147/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/symmetry/Symmetry_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -I/usr/local/lib/cmake/libmsym/../../../include -Iavogadro/qtplugins/symmetry -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtpl ugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o -MF avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o.d -o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o -c avogadro/qtplugins/symmetry/SymmetryPlugin.cpp [148/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Symmetry.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Symmetry.a avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/Symmetry_autogen/mocs_compilation.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetry.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetrywidget.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/operationstablemodel.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/richtextdelegate.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/symmetryutil.cpp.o avogadro/qtplugins/symmetry/CMakeFiles/Symmetry.dir/SymmetryPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Symmetry.a && : [149/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/ballandstick && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/ballandstick/CMakeFiles/BallStick_autogen.dir/AutogenInfo.cmake Release [150/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/ballandstick/BallStick_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/ballandstick -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick .dir/BallStick_autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/ballandstick/BallStick_autogen/mocs_compilation.cpp [151/458] 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/usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/ballandstick/CMakeFiles/BallStick .dir/BallStickPlugin.cpp.o -MF avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o.d -o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o -c avogadro/qtplugins/ballandstick/BallStickPlugin.cpp [153/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/BallStick.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/BallStick.a avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStick_autogen/mocs_compilation.cpp.o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/ballandstick.cpp.o avogadro/qtplugins/ballandstick/CMakeFiles/BallStick.dir/BallStickPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/BallStick.a && : [154/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/licorice && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/licorice/CMakeFiles/Licorice_autogen.dir/AutogenInfo.cmake Release [155/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/licorice -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_ autogen/mocs_compilation.cpp.o -MF avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/licorice/Licorice_autogen/mocs_compilation.cpp [156/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue 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-Iavogadro/qtplugins/licorice/Licorice_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/licorice -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoriceP lugin.cpp.o -MF avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o.d -o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o -c avogadro/qtplugins/licorice/LicoricePlugin.cpp [158/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Licorice.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Licorice.a avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/Licorice_autogen/mocs_compilation.cpp.o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/licorice.cpp.o avogadro/qtplugins/licorice/CMakeFiles/Licorice.dir/LicoricePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Licorice.a && : [159/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals_autogen.dir/AutogenInfo.cmake Release [160/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB 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lib/avogadro2/staticplugins/VanDerWaals.a avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaals_autogen/mocs_compilation.cpp.o avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/vanderwaals.cpp.o avogadro/qtplugins/vanderwaals/CMakeFiles/VanDerWaals.dir/VanDerWaalsPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/VanDerWaals.a && : [164/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/wireframe && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/wireframe/CMakeFiles/Wireframe_autogen.dir/AutogenInfo.cmake Release [165/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/wireframe/Wireframe_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl 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-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wire framePlugin.cpp.o -MF avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o.d -o avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o -c avogadro/qtplugins/wireframe/WireframePlugin.cpp [168/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Wireframe.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Wireframe.a avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/Wireframe_autogen/mocs_compilation.cpp.o avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/wireframe.cpp.o avogadro/qtplugins/wireframe/CMakeFiles/Wireframe.dir/WireframePlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Wireframe.a && : [169/458] cd 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-fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compi lation.cpp.o -MF avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o.d -o avogadro/qtplugins/force/CMakeFiles/Force.dir/Force_autogen/mocs_compilation.cpp.o -c avogadro/qtplugins/force/Force_autogen/mocs_compilation.cpp [171/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/force/Force_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/force -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -MF avogadro /qtplugins/force/CMakeFiles/Force.dir/force.cpp.o.d -o avogadro/qtplugins/force/CMakeFiles/Force.dir/force.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/force/force.cpp In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/force/force.cpp:21: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.h:54:8: warning: 'render' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void render(const Camera& camera); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/drawable.h:92:16: note: overridden virtual function is here virtual void render(const Camera& camera); ^ In file included from /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/force/force.cpp:21: /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/arrowgeometry.h:59:8: warning: 'clear' overrides a member function but is not marked 'override' [-Winconsistent-missing-override] void clear(); ^ /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/rendering/drawable.h:115:16: note: overridden virtual function is here virtual void clear(); ^ 2 warnings generated. 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-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -MF avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o.d -o avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o -c avogadro/qtplugins/meshes/MeshesPlugin.cpp [178/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Meshes.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Meshes.a avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/Meshes_autogen/mocs_compilation.cpp.o avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/meshes.cpp.o avogadro/qtplugins/meshes/CMakeFiles/Meshes.dir/MeshesPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Meshes.a && : [179/458] cd 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-I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/spectra -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialo g.cpp.o -MF avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o.d -o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/spectra/vibrationdialog.cpp [204/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/spectra/Spectra_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/spectra -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel .cpp.o -MF avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o.d -o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/spectra/vibrationmodel.cpp [205/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/spectra/Spectra_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/spectra -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -MF avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o.d -o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o -c /wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1/avogadro/qtplugins/spectra/spectra.cpp [206/458] /nxb-bin/usr/bin/c++ -DQT_CORE_LIB -DQT_GUI_LIB -DQT_NO_DEBUG -DQT_STATICPLUGIN -DQT_WIDGETS_LIB -Iavogadro/qtplugins/spectra/Spectra_autogen/include -I. -I/wrkdirs/usr/ports/science/avogadrolibs/work/avogadrolibs-1.92.1 -Iavogadro/core -Iavogadro/io -Iavogadro/quantumio -Iavogadro/rendering -Iavogadro/qtgui -Iavogadro/qtopengl -Iavogadro/molequeue -Iavogadro/qtplugins/spectra -isystem /usr/local/include/eigen3 -isystem /usr/local/include/qt5 -isystem /usr/local/include/qt5/QtWidgets -isystem /usr/local/include/qt5/QtGui -isystem /usr/local/include/qt5/QtCore -isystem /usr/local/lib/qt5/mkspecs/freebsd-clang -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fvisibility=hidden -fvisibility-inlines-hidden -fPIC -fPIC -std=c++11 -MD -MT avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin. cpp.o -MF avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o.d -o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o -c avogadro/qtplugins/spectra/SpectraPlugin.cpp [207/458] : && /usr/local/bin/cmake -E remove lib/avogadro2/staticplugins/Spectra.a && /nxb-bin/usr/bin/ar qc lib/avogadro2/staticplugins/Spectra.a avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/Spectra_autogen/mocs_compilation.cpp.o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationdialog.cpp.o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/vibrationmodel.cpp.o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/spectra.cpp.o avogadro/qtplugins/spectra/CMakeFiles/Spectra.dir/SpectraPlugin.cpp.o && /nxb-bin/usr/bin/ranlib lib/avogadro2/staticplugins/Spectra.a && : [208/458] cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vrml && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.cmake Release FAILED: avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen avogadro/qtplugins/vrml/VRML_autogen/mocs_compilation.cpp cd /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vrml && /usr/local/bin/cmake -E cmake_autogen /wrkdirs/usr/ports/science/avogadrolibs/work/.build/avogadro/qtplugins/vrml/CMakeFiles/VRML_autogen.dir/AutogenInfo.cmake Release Fatal error 'thread 0xf40a8e00 exits with resources held!' at line 321 in file /usr/local/poudriere/jails/head-armv6/usr/src/lib/libthr/thread/thr_exit.c (errno = 0) ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/avogadrolibs
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