Date: Mon, 4 Feb 2013 10:07:31 +0000 (UTC) From: Marcelo Araujo <araujo@FreeBSD.org> To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r311601 - in head/biology/phyml: . files Message-ID: <201302041007.r14A7Vtx084261@svn.freebsd.org>
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Author: araujo Date: Mon Feb 4 10:07:30 2013 New Revision: 311601 URL: http://svnweb.freebsd.org/changeset/ports/311601 Log: - Update to 20121109. PR: ports/175014 Submitted by: KATO Tsuguru <tkato432@yahoo.com> Deleted: head/biology/phyml/files/ Modified: head/biology/phyml/Makefile (contents, props changed) head/biology/phyml/distinfo (contents, props changed) Modified: head/biology/phyml/Makefile ============================================================================== --- head/biology/phyml/Makefile Mon Feb 4 10:06:31 2013 (r311600) +++ head/biology/phyml/Makefile Mon Feb 4 10:07:30 2013 (r311601) @@ -1,31 +1,33 @@ -# New ports collection makefile for: phyml 3.0 20090706 -# Date created: July 17, 2009 -# Whom: ballen -# +# Created by: ballen # $FreeBSD$ -# PORTNAME= phyml -PORTVERSION= 20090706 +PORTVERSION= 20121109 CATEGORIES= biology MASTER_SITES= GOOGLE_CODE -DISTNAME= phyml_20090706 +DISTNAME= ${PORTNAME}-20120412 +DIST_SUBDIR= ${PORTNAME} + +PATCH_SITES= ${MASTER_SITES} +PATCHFILES= ${PORTVERSION}.patch +PATCH_DIST_STRIP= -p4 MAINTAINER= ports@FreeBSD.org -COMMENT= A simple, fast, and accurate algorithm to estimate large phylogenies +COMMENT= Simple, fast, and accurate algorithm to estimate large phylogenies -WRKSRC= ${WRKDIR}/${PORTNAME}/src -GNU_CONFIGURE= yes -PLIST_FILES= bin/phyml -USE_AUTOTOOLS= automake aclocal -AUTOMAKE_ARGS= --add-missing +LICENSE= GPLv2 -.include <bsd.port.pre.mk> +PATCH_WRKSRC= ${WRKSRC}/src -pre-configure: - ${RM} ${WRKSRC}/missing +USE_AUTOTOOLS= aclocal autoheader automake autoconf +AUTOMAKE_ARGS= --add-missing +MAKE_JOBS_SAFE= yes + +PLIST_FILES= bin/phyml -pre-install: - ${CHMOD} a+x ${WRKSRC}/install-sh +post-patch: + @${REINPLACE_CMD} -e \ + '/^AC_INIT/s|,esyscmd.*,|,[${PORTVERSION}],| ; \ + s|-O2 -msse|$${CFLAGS}|' ${WRKSRC}/configure.ac -.include <bsd.port.post.mk> +.include <bsd.port.mk> Modified: head/biology/phyml/distinfo ============================================================================== --- head/biology/phyml/distinfo Mon Feb 4 10:06:31 2013 (r311600) +++ head/biology/phyml/distinfo Mon Feb 4 10:07:30 2013 (r311601) @@ -1,2 +1,4 @@ -SHA256 (phyml_20090706.tar.gz) = b39fa8ba2bc3a6566f3463c77db0d8992f71a71af353be539d0916173785d4bd -SIZE (phyml_20090706.tar.gz) = 818229 +SHA256 (phyml/phyml-20120412.tar.gz) = a43e51534a1ae2d1ee4c94ced3a1855813ff4872a6c9c2b83b369ddb71198417 +SIZE (phyml/phyml-20120412.tar.gz) = 4089133 +SHA256 (phyml/20121109.patch) = 3aa8bebd0ff78a553795ddda512ef1c7542d1e3c90c1da61c7125c304f6caa2c +SIZE (phyml/20121109.patch) = 11016
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