Date: Thu, 7 May 2020 03:27:12 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv7-default][science/plumed] Failed for plumed-2.6.0 in configure Message-ID: <202005070327.0473RCJe026475@beefy12.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: linimon@FreeBSD.org Ident: $FreeBSD: head/science/plumed/Makefile 534167 2020-05-06 12:00:53Z linimon $ Log URL: http://beefy12.nyi.freebsd.org/data/head-armv7-default/p534218_s360723/logs/plumed-2.6.0.log Build URL: http://beefy12.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p534218_s360723 Log: =>> Building science/plumed build started at Thu May 7 03:26:33 UTC 2020 port directory: /usr/ports/science/plumed package name: plumed-2.6.0 building for: FreeBSD head-armv7-default-job-10 13.0-CURRENT FreeBSD 13.0-CURRENT 1300093 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/plumed/Makefile 534167 2020-05-06 12:00:53Z linimon $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300089 Jail OSVERSION: 1300093 Job Id: 10 !!! Jail is newer than host. (Jail: 1300093, Host: 1300089) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv7 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300093 UNAME_v=FreeBSD 13.0-CURRENT 1300093 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv7-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv7-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv7-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --enable-shared --disable-python --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- MAKE=gmake PKG_CONFIG=pkgconf XDG_DATA_HOME=/wrkdirs/usr/ports/science/plumed/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/plumed/work HOME=/wrkdirs/usr/ports/science/plumed/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/plumed/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=524288 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/plumed/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/plumed/work HOME=/wrkdirs/usr/ports/science/plumed/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/plumed/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-strong " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/plumed" EXAMPLESDIR="share/examples/plumed" DATADIR="share/plumed" WWWDIR="www/plumed" ETCDIR="etc/plumed" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/plumed DOCSDIR=/usr/local/share/doc/plumed EXAMPLESDIR=/usr/local/share/examples/plumed WWWDIR=/usr/local/www/plumed ETCDIR=/usr/local/etc/plumed --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv7 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-0-gd32170dbd5b) Target: armv7-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv7 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300093 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License LGPL3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> plumed-2.6.0 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.14.4.txz [head-armv7-default-job-10] Installing pkg-1.14.4... [head-armv7-default-job-10] Extracting pkg-1.14.4: .......... done ===> plumed-2.6.0 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of plumed-2.6.0 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by plumed-2.6.0 for building =========================================================================== =======================<phase: checksum >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by plumed-2.6.0 for building => SHA256 Checksum OK for plumed-plumed2-v2.6.0_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License LGPL3 accepted by the user ===> Fetching all distfiles required by plumed-2.6.0 for building ===> Extracting for plumed-2.6.0 => SHA256 Checksum OK for plumed-plumed2-v2.6.0_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for plumed-2.6.0 ===> Applying FreeBSD patches for plumed-2.6.0 ===> Cleanly applied FreeBSD patch(es) patch-configure.ac =========================================================================== =======================<phase: build-depends >============================ ===> plumed-2.6.0 depends on executable: bash - not found ===> Installing existing package /packages/All/bash-5.0.17.txz [head-armv7-default-job-10] Installing bash-5.0.17... [head-armv7-default-job-10] `-- Installing gettext-runtime-0.20.2... [head-armv7-default-job-10] | `-- Installing indexinfo-0.3.1... [head-armv7-default-job-10] | `-- Extracting indexinfo-0.3.1: .... done [head-armv7-default-job-10] `-- Extracting gettext-runtime-0.20.2: .......... done [head-armv7-default-job-10] Extracting bash-5.0.17: .......... done Segmentation fault Segmentation fault ===> plumed-2.6.0 depends on executable: bash - found ===> Returning to build of plumed-2.6.0 ===> plumed-2.6.0 depends on executable: xxd - not found ===> Installing existing package /packages/All/vim-console-8.2.0491_1.txz [head-armv7-default-job-10] Installing vim-console-8.2.0491_1... [head-armv7-default-job-10] Extracting vim-console-8.2.0491_1: .......... done ===> plumed-2.6.0 depends on executable: xxd - found ===> Returning to build of plumed-2.6.0 ===> plumed-2.6.0 depends on executable: gmake - not found ===> Installing existing package /packages/All/gmake-4.2.1_3.txz [head-armv7-default-job-10] Installing gmake-4.2.1_3... [head-armv7-default-job-10] Extracting gmake-4.2.1_3: .......... done ===> plumed-2.6.0 depends on executable: gmake - found ===> Returning to build of plumed-2.6.0 ===> plumed-2.6.0 depends on package: pkgconf>=1.3.0_1 - not found ===> Installing existing package /packages/All/pkgconf-1.6.3,1.txz [head-armv7-default-job-10] Installing pkgconf-1.6.3,1... [head-armv7-default-job-10] Extracting pkgconf-1.6.3,1: .......... done ===> plumed-2.6.0 depends on package: pkgconf>=1.3.0_1 - found ===> Returning to build of plumed-2.6.0 ===> plumed-2.6.0 depends on package: autoconf>=2.69 - not found ===> Installing existing package /packages/All/autoconf-2.69_3.txz [head-armv7-default-job-10] Installing autoconf-2.69_3... [head-armv7-default-job-10] `-- Installing autoconf-wrapper-20131203... [head-armv7-default-job-10] `-- Extracting autoconf-wrapper-20131203: .......... done [head-armv7-default-job-10] `-- Installing m4-1.4.18_1,1... [head-armv7-default-job-10] `-- Extracting m4-1.4.18_1,1: .......... done [head-armv7-default-job-10] `-- Installing perl5-5.30.2... [head-armv7-default-job-10] `-- Extracting perl5-5.30.2: .......... done [head-armv7-default-job-10] Extracting autoconf-2.69_3: .......... done ===== Message from perl5-5.30.2: -- The /usr/bin/perl symlink has been removed starting with Perl 5.20. For shebangs, you should either use: #!/usr/local/bin/perl or #!/usr/bin/env perl The first one will only work if you have a /usr/local/bin/perl, the second will work as long as perl is in PATH. ===> plumed-2.6.0 depends on package: autoconf>=2.69 - found ===> Returning to build of plumed-2.6.0 ===> plumed-2.6.0 depends on package: automake>=1.16.1 - not found ===> Installing existing package /packages/All/automake-1.16.2.txz [head-armv7-default-job-10] Installing automake-1.16.2... [head-armv7-default-job-10] Extracting automake-1.16.2: .......... done ===> plumed-2.6.0 depends on package: automake>=1.16.1 - found ===> Returning to build of plumed-2.6.0 =========================================================================== =======================<phase: lib-depends >============================ =========================================================================== =======================<phase: configure >============================ ===> Configuring for plumed-2.6.0 qemu: uncaught target signal 11 (Segmentation fault) - core dumped Segmentation fault autom4te-2.69: need GNU m4 1.4 or later: /usr/local/bin/gm4 aclocal: error: echo failed with exit status: 1 autoreconf-2.69: aclocal failed with exit status: 1 *** Error code 1 Stop. make: stopped in /usr/ports/science/plumed
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