From owner-freebsd-pkg-fallout@freebsd.org Sat Dec 12 01:29:27 2020 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id F3A4347A79F for ; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.nyi.freebsd.org (mailman.nyi.freebsd.org [IPv6:2610:1c1:1:606c::50:13]) by mx1.freebsd.org (Postfix) with ESMTP id 4Ct96v6WzXz3jyl for ; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.nyi.freebsd.org (Postfix) id DFF1447A674; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) Delivered-To: pkg-fallout@mailman.nyi.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.nyi.freebsd.org (Postfix) with ESMTP id DFA8047A825 for ; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256 client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 4Ct96v5sk5z3jlf; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy1.nyi.freebsd.org (beefy1.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e4]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) key-exchange X25519 server-signature RSA-PSS (4096 bits) server-digest SHA256) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id B889614EA1; Sat, 12 Dec 2020 01:29:27 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy1.nyi.freebsd.org (localhost [127.0.0.1]) by beefy1.nyi.freebsd.org (8.16.1/8.16.1) with ESMTP id 0BC1TRcN099189; Sat, 12 Dec 2020 01:29:27 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy1.nyi.freebsd.org (8.16.1/8.16.1/Submit) id 0BC1TRqd099188; Sat, 12 Dec 2020 01:29:27 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Sat, 12 Dec 2020 01:29:27 GMT From: pkg-fallout@FreeBSD.org Message-Id: <202012120129.0BC1TRqd099188@beefy1.nyi.freebsd.org> To: yuri@FreeBSD.org Subject: [package - 114i386-quarterly][misc/py-xgboost] Failed for py37-xgboost-1.2.1 in build Cc: pkg-fallout@FreeBSD.org X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.34 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sat, 12 Dec 2020 01:29:28 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: pkubaj@FreeBSD.org Ident: $FreeBSD: branches/2020Q4/misc/py-xgboost/Makefile 557095 2020-12-05 22:53:15Z pkubaj $ Log URL: http://beefy1.nyi.freebsd.org/data/114i386-quarterly/557766/logs/py37-xgboost-1.2.1.log Build URL: http://beefy1.nyi.freebsd.org/build.html?mastername=114i386-quarterly&build=557766 Log: =>> Building misc/py-xgboost build started at Sat Dec 12 01:28:21 UTC 2020 port directory: /usr/ports/misc/py-xgboost package name: py37-xgboost-1.2.1 building for: FreeBSD 114i386-quarterly-job-01 11.4-RELEASE-p5 FreeBSD 11.4-RELEASE-p5 i386 maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: branches/2020Q4/misc/py-xgboost/Makefile 557095 2020-12-05 22:53:15Z pkubaj $ Poudriere version: 3.2.8-8-gaf08dbda Host OSVERSION: 1300121 Jail OSVERSION: 1104001 Job Id: 01 ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 OSVERSION=1104001 UNAME_v=FreeBSD 11.4-RELEASE-p5 UNAME_r=11.4-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-8-gaf08dbda MASTERMNT=/usr/local/poudriere/data/.m/114i386-quarterly/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/114i386-quarterly/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=114i386-quarterly SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/114i386-quarterly/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py37 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py37 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/py-xgboost/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 HOME=/wrkdirs/usr/ports/misc/py-xgboost/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/py-xgboost/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -lexecinfo -fstack-protector-strong -L/usr/local/lib " LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=11.4 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/xgboost" EXAMPLESDIR="share/examples/xgboost" DATADIR="share/xgboost" WWWDIR="www/xgboost" ETCDIR="etc/xgboost" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/xgboost DOCSDIR=/usr/local/share/doc/xgboost EXAMPLESDIR=/usr/local/share/examples/xgboost WWWDIR=/usr/local/www/xgboost ETCDIR=/usr/local/etc/xgboost --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[114i386-quarterly-job-01] Extracting pkg-1.15.10: .......... done ===> py37-xgboost-1.2.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-xgboost-1.2.1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py37-xgboost-1.2.1 for building =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py37-xgboost-1.2.1 for building => SHA256 Checksum OK for dmlc-xgboost-v1.2.1_GH0.tar.gz. => SHA256 Checksum OK for dmlc-rabit-4acdd7c6f68debe1c39ae07ca75466d74d194dd1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by py37-xgboost-1.2.1 for building ===> Extracting for py37-xgboost-1.2.1 => SHA256 Checksum OK for dmlc-xgboost-v1.2.1_GH0.tar.gz. => SHA256 Checksum OK for dmlc-rabit-4acdd7c6f68debe1c39ae07ca75466d74d194dd1_GH0.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for py37-xgboost-1.2.1 ===> Applying FreeBSD patches for py37-xgboost-1.2.1 from /usr/ports/misc/py-xgboost/files =========================================================================== =================================================== ===> py37-xgboost-1.2.1 depends on executable: cmake - not found ===> Installing existing package /packages/All/cmake-3.18.3.txz [114i386-quarterly-job-01] Installing cmake-3.18.3... [114i386-quarterly-job-01] `-- Installing curl-7.72.0... [114i386-quarterly-job-01] | `-- Installing ca_root_nss-3.58... [114i386-quarterly-job-01] | `-- Extracting ca_root_nss-3.58: ........ done [114i386-quarterly-job-01] | `-- Installing libnghttp2-1.41.0... [114i386-quarterly-job-01] | `-- Extracting libnghttp2-1.41.0: .......... done [114i386-quarterly-job-01] `-- Extracting curl-7.72.0: .......... done [114i386-quarterly-job-01] `-- Installing expat-2.2.8... [114i386-quarterly-job-01] `-- Extracting expat-2.2.8: .......... done [114i386-quarterly-job-01] `-- Installing jsoncpp-1.9.4... 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src/CMakeFiles/objxgboost.dir/tree/updater_skmaker.cc.o [ 96%] Building CXX object src/CMakeFiles/objxgboost.dir/tree/updater_sync.cc.o [ 96%] Built target objxgboost Scanning dependencies of target runxgboost [ 97%] Building CXX object CMakeFiles/runxgboost.dir/src/cli_main.cc.o [ 98%] Linking CXX executable xgboost/xgboost src/CMakeFiles/objxgboost.dir/linear/updater_coordinate.cc.o: In function `.omp_outlined..71': updater_coordinate.cc:(.text+0xa55): undefined reference to `__atomic_load' updater_coordinate.cc:(.text+0xaa2): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_coordinate.cc.o: In function `.omp_outlined..73': updater_coordinate.cc:(.text+0xe35): undefined reference to `__atomic_load' updater_coordinate.cc:(.text+0xe7f): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_shotgun.cc.o: In function `.omp_outlined..40': updater_shotgun.cc:(.text+0xba5): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_shotgun.cc.o:updater_shotgun.cc:(.text+0xbf2): more undefined references to `__atomic_load' follow c++: error: linker command failed with exit code 1 (use -v to see invocation) --- xgboost/xgboost --- *** [xgboost/xgboost] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[3]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 --- CMakeFiles/runxgboost.dir/all --- *** [CMakeFiles/runxgboost.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[2]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[1]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 WARNING:XGBoost build_ext:Disabling OpenMP support. INFO:XGBoost build_ext:Run CMake command: ['cmake', 'xgboost', '-GUnix Makefiles', '-DUSE_OPENMP=1', '-DUSE_CUDA=0', '-DUSE_NCCL=0', '-DBUILD_WITH_SHARED_NCCL=0', '-DHIDE_CXX_SYMBOLS=1', '-DUSE_HDFS=0', '-DUSE_AZURE=0', '-DUSE_S3=0', '-DPLUGIN_LZ4=0', '-DPLUGIN_DENSE_PARSER=0'] -- CMake version 3.18.3 -- xgboost VERSION: 1.2.1 -- Found OpenMP_C: -fopenmp=libomp (found version "4.5") -- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5") -- Found OpenMP_C: -fopenmp=libomp (found version "4.5") -- Found OpenMP_CXX: -fopenmp=libomp (found version "4.5") DMLC_ROOT point to /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7/xgboost/rabit/../dmlc-core -- Configuring done -- Generating done -- Build files have been written to: /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 [ 3%] Built target rabit_empty [ 9%] Built target rabit_base [ 15%] Built target rabit_mock [ 27%] Built target rabit_mock_static [ 28%] Built target rabit [ 96%] Built target objxgboost [ 97%] Linking CXX executable xgboost/xgboost src/CMakeFiles/objxgboost.dir/linear/updater_coordinate.cc.o: In function `.omp_outlined..71': updater_coordinate.cc:(.text+0xa55): undefined reference to `__atomic_load' updater_coordinate.cc:(.text+0xaa2): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_coordinate.cc.o: In function `.omp_outlined..73': updater_coordinate.cc:(.text+0xe35): undefined reference to `__atomic_load' updater_coordinate.cc:(.text+0xe7f): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_shotgun.cc.o: In function `.omp_outlined..40': updater_shotgun.cc:(.text+0xba5): undefined reference to `__atomic_load' src/CMakeFiles/objxgboost.dir/linear/updater_shotgun.cc.o:updater_shotgun.cc:(.text+0xbf2): more undefined references to `__atomic_load' follow c++: error: linker command failed with exit code 1 (use -v to see invocation) --- xgboost/xgboost --- *** [xgboost/xgboost] Error code 1 make[3]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[3]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 --- CMakeFiles/runxgboost.dir/all --- *** [CMakeFiles/runxgboost.dir/all] Error code 2 make[2]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[2]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 *** [all] Error code 2 make[1]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 1 error make[1]: stopped in /wrkdirs/usr/ports/misc/py-xgboost/work-py37/xgboost-1.2.1/python-package/build/temp.freebsd-11.4-RELEASE-p5-i386-3.7 Traceback (most recent call last): File "setup.py", line 162, in build_cmake_extension self.build(src_dir, build_dir, gen, build_tool, use_omp=1) File "setup.py", line 115, in build cwd=build_dir) File "/usr/local/lib/python3.7/subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j24']' returned non-zero exit status 2. During handling of the above exception, another exception occurred: Traceback (most recent call last): File "", line 1, in File "setup.py", line 318, in url='https://github.com/dmlc/xgboost') File "/usr/local/lib/python3.7/site-packages/setuptools/__init__.py", line 145, in setup return distutils.core.setup(**attrs) File "/usr/local/lib/python3.7/distutils/core.py", line 148, in setup dist.run_commands() File "/usr/local/lib/python3.7/distutils/dist.py", line 966, in run_commands self.run_command(cmd) File "/usr/local/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/usr/local/lib/python3.7/distutils/command/build.py", line 135, in run self.run_command(cmd_name) File "/usr/local/lib/python3.7/distutils/cmd.py", line 313, in run_command self.distribution.run_command(command) File "/usr/local/lib/python3.7/distutils/dist.py", line 985, in run_command cmd_obj.run() File "/usr/local/lib/python3.7/site-packages/setuptools/command/build_ext.py", line 84, in run _build_ext.run(self) File "/usr/local/lib/python3.7/distutils/command/build_ext.py", line 340, in run self.build_extensions() File "/usr/local/lib/python3.7/distutils/command/build_ext.py", line 449, in build_extensions self._build_extensions_serial() File "/usr/local/lib/python3.7/distutils/command/build_ext.py", line 474, in _build_extensions_serial self.build_extension(ext) File "setup.py", line 170, in build_extension self.build_cmake_extension() File "setup.py", line 165, in build_cmake_extension self.build(src_dir, build_dir, gen, build_tool, use_omp=0) File "setup.py", line 115, in build cwd=build_dir) File "/usr/local/lib/python3.7/subprocess.py", line 363, in check_call raise CalledProcessError(retcode, cmd) subprocess.CalledProcessError: Command '['make', '-j24']' returned non-zero exit status 2. *** Error code 1 Stop. make: stopped in /usr/ports/misc/py-xgboost