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Date:      Tue, 29 Nov 2016 21:15:41 +0000 (UTC)
From:      Joseph Mingrone <jrm@FreeBSD.org>
To:        ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org
Subject:   svn commit: r427397 - head/science/afni
Message-ID:  <201611292115.uATLFfvn055597@repo.freebsd.org>

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Author: jrm
Date: Tue Nov 29 21:15:41 2016
New Revision: 427397
URL: https://svnweb.freebsd.org/changeset/ports/427397

Log:
  science/afni: Use BUILD_DEPENDS/RUN_DEPENDS instead of LIB_DEPENDS for
  math/R, because R may be configured without libR.
  
  While here, fix some stage-qa warnings about indirect dependencies.
  
  Reviewed by:	AMDmi3
  Approved by:	bacon4000@gmail.com (maintainer) swills (mentor)
  Differential Revision:	https://reviews.freebsd.org/D8649

Modified:
  head/science/afni/Makefile

Modified: head/science/afni/Makefile
==============================================================================
--- head/science/afni/Makefile	Tue Nov 29 20:50:56 2016	(r427396)
+++ head/science/afni/Makefile	Tue Nov 29 21:15:41 2016	(r427397)
@@ -11,6 +11,7 @@
 
 PORTNAME=	afni
 PORTVERSION=	2015.11.13
+PORTREVISION=	1
 CATEGORIES=	science biology graphics
 MASTER_SITES=	http://www.acadix.biz/Ports/distfiles/
 
@@ -19,17 +20,19 @@ COMMENT=	Advanced Functional Neuro Imagi
 
 LICENSE=	GPLv2
 
-BUILD_DEPENDS=	gm4:devel/m4
-LIB_DEPENDS=	libXm.so:x11-toolkits/open-motif \
-		libR.so:math/R \
+BUILD_DEPENDS=	gm4:devel/m4 \
+		R:math/R
+LIB_DEPENDS=	libexpat.so:textproc/expat2 \
+		libf2c.so:lang/f2c \
 		libgsl.so:math/gsl \
 		libnetcdff.so:science/netcdf-fortran \
 		libxml2.so:textproc/libxml2 \
-		libf2c.so:lang/f2c
-RUN_DEPENDS=	mpeg_encode:multimedia/mpeg_encode \
+		libXm.so:x11-toolkits/open-motif
+RUN_DEPENDS=	endian:sysutils/endian \
+		mpeg_encode:multimedia/mpeg_encode \
 		ppmtogif:graphics/netpbm \
-		endian:sysutils/endian \
-		qhull:math/qhull5
+		qhull:math/qhull5 \
+		R:math/R
 
 CONFLICTS=	im-[0-9]* \
 		nifticlib-[0-9]* \
@@ -47,8 +50,8 @@ USE_GNOME=	glib20
 
 BROKEN_sparc64=	Does not compile: "undefined reference to '_mcount'"
 
-USE_GL=		glw glu
-USE_XORG=	xi
+USE_GL=		gl glu glw
+USE_XORG=	x11 xext xi xmu xp xt
 MAKE_ENV=	CC="${CC}" R_SHARE_DIR=${LOCALBASE}/lib/R/share
 MAKE_JOBS_UNSAFE=yes
 



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