Date: Thu, 21 May 2020 09:49:31 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-powerpc64-default][misc/xgboost] Failed for xgboost-1.0.2 in build Message-ID: <202005210949.04L9nVCM022738@pylon.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: jbeich@FreeBSD.org Ident: $FreeBSD: head/misc/xgboost/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Log URL: http://pylon.nyi.freebsd.org/data/head-powerpc64-default/p535193_s361019/logs/xgboost-1.0.2.log Build URL: http://pylon.nyi.freebsd.org/build.html?mastername=head-powerpc64-default&build=p535193_s361019 Log: =>> Building misc/xgboost build started at Thu May 21 09:45:11 UTC 2020 port directory: /usr/ports/misc/xgboost package name: xgboost-1.0.2 building for: FreeBSD head-powerpc64-default-job-07 13.0-CURRENT FreeBSD 13.0-CURRENT 1300094 powerpc maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/misc/xgboost/Makefile 528082 2020-03-08 21:56:36Z jbeich $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300084 Jail OSVERSION: 1300094 Job Id: 07 !!! Jail is newer than host. (Jail: 1300094, Host: 1300084) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh OSVERSION=1300094 UNAME_v=FreeBSD 13.0-CURRENT 1300094 UNAME_r=13.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-powerpc64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-powerpc64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-powerpc64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for xgboost-1.0.2: OPENMP=off: Parallel processing support via OpenMP ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/xgboost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/xgboost/work HOME=/wrkdirs/usr/ports/misc/xgboost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/xgboost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/misc/xgboost/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/misc/xgboost/work HOME=/wrkdirs/usr/ports/misc/xgboost/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/misc/xgboost/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES DESTDIR=/wrkdirs/usr/ports/misc/xgboost/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" /usr/local/lib/libdmlc.so -lexecinfo -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="i nstall -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- CMAKE_BUILD_TYPE="release" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/xgboost" EXAMPLESDIR="share/examples/xgboost" DATADIR="share/xgboost" WWWDIR="www/xgboost" ETCDIR="etc/xgboost" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/xgboost DOCSDIR=/usr/local/share/doc/xgboost EXAMPLESDIR=/usr/local/share/examples/xgboost WWWDIR=/usr/local/www/xgboost ETCDIR=/usr/local/etc/xgboost --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. 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[head-powerpc64-default-job-07] Extracting pkg-1.14.4: .......... done ===> xgboost-1.0.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of xgboost-1.0.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by xgboost-1.0.2 for building =========================================================================== =======================<phase: checksum >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by xgboost-1.0.2 for building => SHA256 Checksum OK for dmlc-xgboost-v1.0.2_GH0.tar.gz. => SHA256 Checksum OK for dmlc-rabit-2f25347_GH0.tar.gz. => SHA256 Checksum OK for NVlabs-cub-b20808b_GH0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License APACHE20 accepted by the user ===> Fetching all distfiles required by xgboost-1.0.2 for building ===> Extracting for xgboost-1.0.2 => SHA256 Checksum OK for dmlc-xgboost-v1.0.2_GH0.tar.gz. => SHA256 Checksum OK for dmlc-rabit-2f25347_GH0.tar.gz. => SHA256 Checksum OK for NVlabs-cub-b20808b_GH0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for xgboost-1.0.2 ===> Applying FreeBSD patches for xgboost-1.0.2 ===> Cleanly applied FreeBSD patch(es) patch-CMakeLists.txt patch-rabit_CMakeLists.txt =========================================================================== =======================<phase: build-depends >============================ ===> xgboost-1.0.2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.17.2.txz <snip> If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem ===> xgboost-1.0.2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of xgboost-1.0.2 ===> xgboost-1.0.2 depends on executable: ninja - not found ===> Installing existing package /packages/All/ninja-1.10.0,2.txz [head-powerpc64-default-job-07] Installing ninja-1.10.0,2... [head-powerpc64-default-job-07] `-- Installing python37-3.7.7... [head-powerpc64-default-job-07] | `-- Installing libffi-3.2.1_3... [head-powerpc64-default-job-07] | `-- Extracting libffi-3.2.1_3: .......... done [head-powerpc64-default-job-07] | `-- Installing readline-8.0.4... [head-powerpc64-default-job-07] | `-- Extracting readline-8.0.4: .......... done [head-powerpc64-default-job-07] `-- Extracting python37-3.7.7: .......... done [head-powerpc64-default-job-07] Extracting ninja-1.10.0,2: ........ done ===== Message from python37-3.7.7: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> xgboost-1.0.2 depends on executable: ninja - found ===> Returning to build of xgboost-1.0.2 =========================================================================== =======================<phase: lib-depends >============================ ===> xgboost-1.0.2 depends on shared library: libdmlc.so - not found ===> Installing existing package /packages/All/dmlc-core-0.3.123.txz [head-powerpc64-default-job-07] Installing dmlc-core-0.3.123... [head-powerpc64-default-job-07] Extracting dmlc-core-0.3.123: .......... done ===> xgboost-1.0.2 depends on shared library: libdmlc.so - found (/usr/local/lib/libdmlc.so) ===> Returning to build of xgboost-1.0.2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for xgboost-1.0.2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/misc/xgboost/work/.build -- The CXX compiler identification is Clang 10.0.0 -- The C compiler identification is Clang 10.0.0 -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ - works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc - works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- CMake version 3.17.2 -- Performing Test XGBOOST_MM_PREFETCH_PRESENT -- Performing Test XGBOOST_MM_PREFETCH_PRESENT - Failed -- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT -- Performing Test XGBOOST_BUILTIN_PREFETCH_PRESENT - Success -- xgboost VERSION: 1.0.2 CMake Warning (dev) at rabit/CMakeLists.txt:7 (option): Policy CMP0077 is not set: option() honors normal variables. 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For compatibility with older versions of CMake, option is clearing the normal variable 'DMLC_ROOT'. This warning is for project developers. 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-D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -std=gnu++11 -MD -MT src/CMakeFiles/objxgboost.dir/common/json.cc.o -MF src/CMakeFiles/objxgboost.dir/common/json.cc.o.d -o src/CMakeFiles/objxgboost.dir/common/json.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/common/json.cc /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/common/json.cc:350:11: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if (c == -1) { break; } ~ ^ ~~ /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/common/json.cc:464:12: warning: result of comparison of constant -1 with expression of type 'char' is always false [-Wtautological-constant-out-of-range-compare] if (ch == EOF || ch == '\r' || ch == '\n') { ~~ ^ ~~~ 2 warnings generated. [32/74] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -std=gnu++11 -MD -MT src/CMakeFiles/objxgboost.dir/common/version.cc.o -MF src/CMakeFiles/objxgboost.dir/common/version.cc.o.d -o src/CMakeFiles/objxgboost.dir/common/version.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/common/version.cc [33/74] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -std=gnu++11 -MD -MT src/CMakeFiles/objxgboost.dir/data/data.cc.o -MF src/CMakeFiles/objxgboost.dir/data/data.cc.o.d -o src/CMakeFiles/objxgboost.dir/data/data.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc FAILED: src/CMakeFiles/objxgboost.dir/data/data.cc.o /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -std=gnu++11 -MD -MT src/CMakeFiles/objxgboost.dir/data/data.cc.o -MF src/CMakeFiles/objxgboost.dir/data/data.cc.o.d -o src/CMakeFiles/objxgboost.dir/data/data.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc In file included from /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:8: In file included from /usr/local/include/dmlc/./io.h:446: /usr/local/include/dmlc/./serializer.h:63:11: error: no member named 'Write' in 'dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>' Else::Write(strm, data); ~~~~~~^ /usr/local/include/dmlc/./serializer.h:63:11: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>::Write' requested here /usr/local/include/dmlc/./serializer.h:63:11: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::NativePODHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>, xgboost::DataType>::Write' requested here /usr/local/include/dmlc/./serializer.h:275:11: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::ArithmeticHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::NativePODHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>, xgboost::DataType>, xgboost::DataType>::Write' requested here ::Write(strm, data); ^ /usr/local/include/dmlc/./io.h:452:27: note: in instantiation of member function 'dmlc::serializer::Handler<xgboost::DataType>::Write' requested here serializer::Handler<T>::Write(this, data); ^ /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:40:9: note: in instantiation of function template specialization 'dmlc::Stream::Write<xgboost::DataType>' requested here strm->Write(type); ^ /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:156:3: note: in instantiation of function template specialization '(anonymous namespace)::SaveScalarField<unsigned long>' requested here SaveScalarField(fo, u8"num_row", DataType::kUInt64, num_row_); ++field_cnt; ^ In file included from /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:8: In file included from /usr/local/include/dmlc/./io.h:446: /usr/local/include/dmlc/./serializer.h:66:18: error: no member named 'Read' in 'dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>' return Else::Read(strm, data); ~~~~~~^ /usr/local/include/dmlc/./serializer.h:66:18: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>::Read' requested here /usr/local/include/dmlc/./serializer.h:66:18: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::NativePODHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>, xgboost::DataType>::Read' requested here /usr/local/include/dmlc/./serializer.h:294:7: note: in instantiation of member function 'dmlc::serializer::IfThenElse<false, dmlc::serializer::ArithmeticHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::NativePODHandler<xgboost::DataType>, dmlc::serializer::IfThenElse<false, dmlc::serializer::SaveLoadClassHandler<xgboost::DataType>, dmlc::serializer::UndefinedSerializerFor<xgboost::DataType>, xgboost::DataType>, xgboost::DataType>, xgboost::DataType>::Read' requested here ::Read(strm, data); ^ /usr/local/include/dmlc/./io.h:456:34: note: in instantiation of member function 'dmlc::serializer::Handler<xgboost::DataType>::Read' requested here return serializer::Handler<T>::Read(this, out_data); ^ /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:74:15: note: in instantiation of function template specialization 'dmlc::Stream::Read<xgboost::DataType>' requested here CHECK(strm->Read(&type)) << invalid; ^ /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/data.cc:191:3: note: in instantiation of function template specialization '(anonymous namespace)::LoadScalarField<unsigned long>' requested here LoadScalarField(fi, u8"num_row", DataType::kUInt64, &num_row_); ^ 2 errors generated. [34/74] /usr/bin/c++ -DDMLC_LOG_CUSTOMIZE=1 -DXGBOOST_BUILTIN_PREFETCH_PRESENT=1 -D_MWAITXINTRIN_H_INCLUDED -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/dmlc-core/include -I/wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/rabit/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -funroll-loops -std=gnu++11 -MD -MT src/CMakeFiles/objxgboost.dir/data/ellpack_page.cc.o -MF src/CMakeFiles/objxgboost.dir/data/ellpack_page.cc.o.d -o src/CMakeFiles/objxgboost.dir/data/ellpack_page.cc.o -c /wrkdirs/usr/ports/misc/xgboost/work/xgboost-1.0.2/src/data/ellpack_page.cc ninja: build stopped: subcommand failed. ===> Compilation failed unexpectedly. Try to set MAKE_JOBS_UNSAFE=yes and rebuild before reporting the failure to the maintainer. *** Error code 1 Stop. make: stopped in /usr/ports/misc/xgboost
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