From owner-freebsd-ports-bugs@FreeBSD.ORG Wed Apr 2 16:00:08 2008 Return-Path: Delivered-To: freebsd-ports-bugs@hub.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 3E7431065674 for ; Wed, 2 Apr 2008 16:00:08 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (freefall.freebsd.org [IPv6:2001:4f8:fff6::28]) by mx1.freebsd.org (Postfix) with ESMTP id 183B58FC23 for ; Wed, 2 Apr 2008 16:00:08 +0000 (UTC) (envelope-from gnats@FreeBSD.org) Received: from freefall.freebsd.org (gnats@localhost [127.0.0.1]) by freefall.freebsd.org (8.14.2/8.14.2) with ESMTP id m32G0865065133 for ; Wed, 2 Apr 2008 16:00:08 GMT (envelope-from gnats@freefall.freebsd.org) Received: (from gnats@localhost) by freefall.freebsd.org (8.14.2/8.14.1/Submit) id m32G08mk065132; Wed, 2 Apr 2008 16:00:08 GMT (envelope-from gnats) Resent-Date: Wed, 2 Apr 2008 16:00:08 GMT Resent-Message-Id: <200804021600.m32G08mk065132@freefall.freebsd.org> Resent-From: FreeBSD-gnats-submit@FreeBSD.org (GNATS Filer) Resent-To: freebsd-ports-bugs@FreeBSD.org Resent-Reply-To: FreeBSD-gnats-submit@FreeBSD.org, Wen heping Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:4f8:fff6::34]) by hub.freebsd.org (Postfix) with ESMTP id 115271065670 for ; Wed, 2 Apr 2008 15:50:58 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (www.freebsd.org [IPv6:2001:4f8:fff6::21]) by mx1.freebsd.org (Postfix) with ESMTP id F0CBA8FC22 for ; Wed, 2 Apr 2008 15:50:57 +0000 (UTC) (envelope-from nobody@FreeBSD.org) Received: from www.freebsd.org (localhost [127.0.0.1]) by www.freebsd.org (8.14.2/8.14.2) with ESMTP id m32Fosko078976 for ; Wed, 2 Apr 2008 15:50:54 GMT (envelope-from nobody@www.freebsd.org) Received: (from nobody@localhost) by www.freebsd.org (8.14.2/8.14.1/Submit) id m32Fos6I078974; Wed, 2 Apr 2008 15:50:54 GMT (envelope-from nobody) Message-Id: <200804021550.m32Fos6I078974@www.freebsd.org> Date: Wed, 2 Apr 2008 15:50:54 GMT From: Wen heping To: freebsd-gnats-submit@FreeBSD.org X-Send-Pr-Version: www-3.1 Cc: Subject: ports/122374: [Update] biology/primer3 : update to 1.1.3 X-BeenThere: freebsd-ports-bugs@freebsd.org X-Mailman-Version: 2.1.5 Precedence: list List-Id: Ports bug reports List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Wed, 02 Apr 2008 16:00:08 -0000 >Number: 122374 >Category: ports >Synopsis: [Update] biology/primer3 : update to 1.1.3 >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: update >Submitter-Id: current-users >Arrival-Date: Wed Apr 02 16:00:07 UTC 2008 >Closed-Date: >Last-Modified: >Originator: Wen heping >Release: FreeBSD 7.0 release >Organization: ChangAn Middle School >Environment: FreeBSD fb7.wenjing.com 7.0-RELEASE FreeBSD 7.0-RELEASE #0: Sun Feb 24 19:59:52 UTC 2008 root@logan.cse.buffalo.edu:/usr/obj/usr/src/sys/GENERIC i386 >Description: update to 1.1.3 from 1.0.1 with some change of Makefile >How-To-Repeat: >Fix: Patch attached with submission follows: --- Makefile.orig 2008-04-02 18:24:09.000000000 +0000 +++ Makefile 2008-04-02 18:31:39.000000000 +0000 @@ -6,17 +6,17 @@ # PORTNAME= primer3 -PORTVERSION= 1.0.1 +PORTVERSION= 1.1.3 CATEGORIES= biology -MASTER_SITES= ${MASTER_SITE_SOURCEFORGE} -MASTER_SITE_SUBDIR= ${PORTNAME} -DISTNAME= ${PORTNAME}_${PORTVERSION} +MASTER_SITES= SF +DISTNAME= ${PORTNAME}-${PORTVERSION} MAINTAINER= fernan@iib.unsam.edu.ar COMMENT= Primer3 helps to choose primers for PCR reactions +USE_GMAKE= yes WRKSRC= ${WRKDIR}/${DISTNAME}/src -DOCUMENTS= README.${PORTNAME}_${PORTVERSION}.txt example +DOCUMENTS= README.txt example post-patch: @${REINPLACE_CMD} \ @@ -29,7 +29,7 @@ do-install: @${INSTALL_PROGRAM} ${WRKSRC}/primer3_core ${PREFIX}/bin/primer3 @${MKDIR} ${DATADIR} - @${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/Copyright.txt ${DATADIR} + @${INSTALL_DATA} ${WRKDIR}/${DISTNAME}/COPYING.txt ${DATADIR} .if !defined(NOPORTDOCS) @${MKDIR} ${DOCSDIR} .for file in ${DOCUMENTS} @@ -42,6 +42,6 @@ .endif post-install: - @${CAT} ${DATADIR}/Copyright.txt + @${CAT} ${DATADIR}/COPYING.txt .include --- distinfo.orig 2006-12-29 23:40:53.000000000 +0000 +++ distinfo 2008-04-02 18:27:05.000000000 +0000 @@ -1,3 +1,3 @@ -MD5 (primer3_1.0.1.tar.gz) = 4fa33b8667cec1b88f1516d175eb1bed -SHA256 (primer3_1.0.1.tar.gz) = 2f7641d66d75b4830a01d31dbc96c61ffad2b1f047287009906902558a9e165e -SIZE (primer3_1.0.1.tar.gz) = 902576 +MD5 (primer3-1.1.3.tar.gz) = 3d027d5dcbdb88c0f9622938f9d38534 +SHA256 (primer3-1.1.3.tar.gz) = ad3071fd1a8da8caae6f30b799cae4b7e53f00476ca0441b37bddf8995d1fa38 +SIZE (primer3-1.1.3.tar.gz) = 943678 --- pkg-plist.orig 2006-12-29 23:40:53.000000000 +0000 +++ pkg-plist 2008-04-02 18:34:53.000000000 +0000 @@ -1,361 +1,379 @@ bin/primer3 -%%PORTDOCS%%%%DOCSDIR%%/README.primer3_1.0.1.txt -%%PORTDOCS%%%%DOCSDIR%%/example -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_gen.pl -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_input -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_input -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_long_score_output -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_output -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_score_output -%%PORTDOCS%%%%EXAMPLESDIR%%/dpal_test.pl -%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_input -%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_output -%%PORTDOCS%%%%EXAMPLESDIR%%/long_seq_tm_test.pl -%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production.lib -%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Ns.lib -%%PORTDOCS%%%%EXAMPLESDIR%%/not_for_production_Xs.lib -%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_input -%%PORTDOCS%%%%EXAMPLESDIR%%/p3-tmpl-mispriming_output -%%PORTDOCS%%%%EXAMPLESDIR%%/p3test.pl -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_input -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/AGAG.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.int -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/included_test_w_middle.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/long_seq.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-02.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-03.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-06.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-19.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP01-21.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/SP04-07.txt.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.for -%%PORTDOCS%%%%EXAMPLESDIR%%/primer1_list_last/targets_test.rev -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_formatted_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_input -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary1_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_formatted_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_input -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_boundary_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_input -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_check_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_input -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_end_pathology_output -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err5.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err6.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality1.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality2.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality3.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/seq_quality4.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/too_many_product_sizes.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_min_size.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/zero_num_return.in -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_dna_conc.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_float_4.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_gc_int_3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_num_ns.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_product_sizes_4.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_salt_conc.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_any.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/bad_self_end.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/empty_product_size.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/gc_clamp_min_size.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/incorrect_task.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_gc_content_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/io_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_min_tm.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_opt_tm.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/MAX_PRIMER_LENGTH.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_limit_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/max_size_min_product.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/min_opt_tm.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mishyb_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/mispr_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_equal.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/no_terminal_equal.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_max_size.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size_int.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/opt_min_size.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pair_mispr.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/pr_gc_content_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_size_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/product_tm_obj_fn.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err4.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err5.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err6.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_err.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err1.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err2.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err3.out -%%PORTDOCS%%%%EXAMPLESDIR%%/primer_global_err/repeat_lib_int_err4.out 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