Date: Tue, 10 Aug 2004 15:12:10 -0300 (ART) From: Fernan Aguero <fernan@iib.unsam.edu.ar> To: FreeBSD-gnats-submit@FreeBSD.org Subject: ports/70271: [new port] biology/finchtv a DNA sequence trace viewer Message-ID: <200408101812.i7AICAKW015933@pi.iib.unsam.edu.ar> Resent-Message-ID: <200408101830.i7AIUTLn049587@freefall.freebsd.org>
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>Number: 70271 >Category: ports >Synopsis: [new port] biology/finchtv a DNA sequence trace viewer >Confidential: no >Severity: non-critical >Priority: low >Responsible: freebsd-ports-bugs >State: open >Quarter: >Keywords: >Date-Required: >Class: change-request >Submitter-Id: current-users >Arrival-Date: Tue Aug 10 18:30:26 GMT 2004 >Closed-Date: >Last-Modified: >Originator: Fernan Aguero >Release: FreeBSD 4.10-RELEASE-p2 i386 >Organization: IIB-UNSAM >Environment: FreeBSD pi.iib.unsam.edu.ar 4.10-RELEASE-p2 FreeBSD 4.10-RELEASE #0: Wed May 26 12:56:43 ART 2004 fernan@pi.iib.unsam.edu.ar:/usr/obj/usr/src/sys/PI i386 >Description: It is a linux binary, it's running fine for me. It comes with three DNA sequence trace files (chromatograms) that anyone can open to test the program. >How-To-Repeat: >Fix: --- finchtv.shar begins here --- # This is a shell archive. Save it in a file, remove anything before # this line, and then unpack it by entering "sh file". Note, it may # create directories; files and directories will be owned by you and # have default permissions. # # This archive contains: # # finchtv # finchtv/Makefile # finchtv/pkg-descr # finchtv/distinfo # finchtv/pkg-plist # echo c - finchtv mkdir -p finchtv > /dev/null 2>&1 echo x - finchtv/Makefile sed 's/^X//' >finchtv/Makefile << 'END-of-finchtv/Makefile' X# vim:ts=8:sw=8:number:nowrap X# New ports collection makefile for: FinchTV X# Date created: 10 Aug 2004 X# Whom: Fernan Aguero <fernan@iib.unsam.edu.ar> X# X# $FreeBSD$ X# X XPORTNAME= finchtv XPORTVERSION= 1.1.0 XCATEGORIES= biology XMASTER_SITES= http://www.geospiza.com/finchtv/download/programs/linux/ XDISTNAME= ${PORTNAME}_${PORTVERSION} X XMAINTAINER= fernan@iib.unsam.edu.ar XCOMMENT= A chromatogram trace viewer X XUSE_LINUX= yes XONLY_FOR_ARCHS= i386 XNO_BUILD= yes X XDOCS= License.txt ReleaseNotes.txt FinchTV1-1Help.pdf X Xdo-install: X X.if !defined(NOPORTDOCS) X @ ${MKDIR} ${DOCSDIR} X X.for doc in ${DOCS} X ${INSTALL_MAN} ${WRKSRC}/${doc} ${DOCSDIR} X.endfor X X.endif X X @ ${MKDIR} ${DATADIR} X ${CP} -R ${WRKSRC}/SampleData/ ${DATADIR} X X ${INSTALL_PROGRAM} ${WRKSRC}/finchtv ${PREFIX}/bin X ${BRANDELF} -t Linux ${PREFIX}/bin/finchtv X X.include <bsd.port.mk> END-of-finchtv/Makefile echo x - finchtv/pkg-descr sed 's/^X//' >finchtv/pkg-descr << 'END-of-finchtv/pkg-descr' XFinchTV is the popular way to view sequence traces on Linux, Mac OSX, Xand Windows. FinchTV is the only trace viewer that can display an entire Xtrace in a scalable multi-pane view. X XFinchTV reads chromatogram files from the most popular formats. In Xaddition to displaying a multi-color sequence above the trace, FinchTV Xdisplays quality values (when available). You can adjust the scale in Xboth vertical and horizontal directions in either single or multipane Xviews. X XFinchTV can: Xo print traces (on a single page or control the number of panels printed) Xo export sequences in FASTA format Xo open gzipped files Xo open files with drag and drop Xo shows additional details about the file (sample ID, run start and stop X times, spacing, mobility, lane number, etc.) X XWWW: http://www.geospiza.com/finchtv/index.htm END-of-finchtv/pkg-descr echo x - finchtv/distinfo sed 's/^X//' >finchtv/distinfo << 'END-of-finchtv/distinfo' XMD5 (finchtv_1.1.0.tar.gz) = 8a5cd2333150ab2a4d81f04ed3939d63 XSIZE (finchtv_1.1.0.tar.gz) = 4949840 END-of-finchtv/distinfo echo x - finchtv/pkg-plist sed 's/^X//' >finchtv/pkg-plist << 'END-of-finchtv/pkg-plist' Xbin/finchtv X%%PORTDOCS%%%%DOCSDIR%%/License.txt X%%PORTDOCS%%%%DOCSDIR%%/ReleaseNotes.txt X%%PORTDOCS%%%%DOCSDIR%%/FinchTV1-1Help.pdf X%%DATADIR%%/78I21_1101.y1.ab1 X%%DATADIR%%/G33P641RB11.scf.gz X%%DATADIR%%/G33P771FF3.scf X@dirrm %%DATADIR%% X%%PORTDOCS%%@dirrm %%DOCSDIR%% END-of-finchtv/pkg-plist exit --- finchtv.shar ends here --- >Release-Note: >Audit-Trail: >Unformatted:
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