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Sun, 10 Apr 2022 23:21:54 GMT (envelope-from git) Date: Sun, 10 Apr 2022 23:21:54 GMT Message-Id: <202204102321.23ANLsoT069871@gitrepo.freebsd.org> To: ports-committers@FreeBSD.org, dev-commits-ports-all@FreeBSD.org, dev-commits-ports-main@FreeBSD.org From: Yuri Victorovich Subject: git: 0fe062bee9e2 - main - biology/gatk: Update 4.2.0.0 -> 4.2.6.0 List-Id: Commits to the main branch of the FreeBSD ports repository List-Archive: https://lists.freebsd.org/archives/dev-commits-ports-main List-Help: List-Post: List-Subscribe: List-Unsubscribe: Sender: owner-dev-commits-ports-main@freebsd.org X-BeenThere: dev-commits-ports-main@freebsd.org MIME-Version: 1.0 Content-Type: text/plain; charset=utf-8 Content-Transfer-Encoding: 8bit X-Git-Committer: yuri X-Git-Repository: ports X-Git-Refname: refs/heads/main X-Git-Reftype: branch X-Git-Commit: 0fe062bee9e27456d45d17eb11044d6b406b4b27 Auto-Submitted: auto-generated ARC-Message-Signature: i=1; a=rsa-sha256; c=relaxed/relaxed; d=freebsd.org; s=dkim; 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mx1.freebsd.org; none X-ThisMailContainsUnwantedMimeParts: N The branch main has been updated by yuri: URL: https://cgit.FreeBSD.org/ports/commit/?id=0fe062bee9e27456d45d17eb11044d6b406b4b27 commit 0fe062bee9e27456d45d17eb11044d6b406b4b27 Author: Yuri Victorovich AuthorDate: 2022-04-10 22:59:14 +0000 Commit: Yuri Victorovich CommitDate: 2022-04-10 23:21:50 +0000 biology/gatk: Update 4.2.0.0 -> 4.2.6.0 --- biology/gatk/Makefile | 6 +++--- biology/gatk/distinfo | 10 +++++----- 2 files changed, 8 insertions(+), 8 deletions(-) diff --git a/biology/gatk/Makefile b/biology/gatk/Makefile index 11e3971e5dab..4c3a2bc0147f 100644 --- a/biology/gatk/Makefile +++ b/biology/gatk/Makefile @@ -1,5 +1,5 @@ PORTNAME= gatk -DISTVERSION= 4.2.0.0 +DISTVERSION= 4.2.6.0 CATEGORIES= biology java EXTRACT_ONLY= ${DISTNAME}${EXTRACT_SUFX} @@ -11,7 +11,7 @@ LICENSE_FILE= ${WRKSRC}/LICENSE.TXT BROKEN_FreeBSD_12_powerpc64= fails to build: String index out of range: -1 -BUILD_DEPENDS= gradle62:devel/gradle62 +BUILD_DEPENDS= gradle:devel/gradle USES= gettext-runtime USE_GITHUB= yes @@ -82,7 +82,7 @@ post-extract: # need a separate extract step because the cache is in /tmp, and n .endif do-build: - @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle62 \ + @cd ${WRKSRC} && ${SETENV} ${MAKE_ENV} gradle \ --gradle-user-home ${DEPS_CACHE_DIR}/gradle-${PORTNAME} --project-cache-dir ${DEPS_CACHE_DIR}/gradle-${PORTNAME} \ ${GRADLE_ARGS} --build-cache localJar diff --git a/biology/gatk/distinfo b/biology/gatk/distinfo index 017c83417aa0..1aba6894ba0a 100644 --- a/biology/gatk/distinfo +++ b/biology/gatk/distinfo @@ -1,5 +1,5 @@ -TIMESTAMP = 1615661028 -SHA256 (gatk-4.2.0.0-deps.tar.gz) = 12d2415904bae017169a3177ecd86d48f4faa7d862c0b24ccd224f0f6a95b221 -SIZE (gatk-4.2.0.0-deps.tar.gz) = 281152285 -SHA256 (broadinstitute-gatk-4.2.0.0_GH0.tar.gz) = 5766f135e372e122ce92c87e604342229228c8ceb98be1e74d52a7039e208e01 -SIZE (broadinstitute-gatk-4.2.0.0_GH0.tar.gz) = 75705393 +TIMESTAMP = 1649626976 +SHA256 (gatk-4.2.6.0-deps.tar.gz) = 8463fb40b969ef29b59663e222b00478aec5704be29ac166706457aa05cf5514 +SIZE (gatk-4.2.6.0-deps.tar.gz) = 545437623 +SHA256 (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 6474111fd7686d06d9b6cb358c189739f15f8d720b5ce079fc0e3356e3e76bc2 +SIZE (broadinstitute-gatk-4.2.6.0_GH0.tar.gz) = 92541777