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Date:      Tue, 15 Jan 2019 00:05:56 GMT
From:      pkg-fallout@FreeBSD.org
To:        pkg-fallout@FreeBSD.org
Subject:   [package - head-armv7-default][math/suitesparse] Failed for suitesparse-5.2.0_2 in build
Message-ID:  <201901150005.x0F05uk9032381@beefy16.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     fortran@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/math/suitesparse/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy16.nyi.freebsd.org/data/head-armv7-default/p490022_s342952/logs/suitesparse-5.2.0_2.log
Build URL:      http://beefy16.nyi.freebsd.org/build.html?mastername=head-armv7-default&build=p490022_s342952
Log:

=>> Building math/suitesparse
build started at Mon Jan 14 23:17:46 UTC 2019
port directory: /usr/ports/math/suitesparse
package name: suitesparse-5.2.0_2
building for: FreeBSD head-armv7-default-job-07 13.0-CURRENT FreeBSD 13.0-CURRENT 1300008 arm
maintained by: fortran@FreeBSD.org
Makefile ident:      $FreeBSD: head/math/suitesparse/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8
Host OSVERSION: 1300002
Jail OSVERSION: 1300008
Job Id: 07




!!! Jail is newer than host. (Jail: 1300008, Host: 1300002) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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---Begin OPTIONS List---
===> The following configuration options are available for suitesparse-5.2.0_2:
====> Options available for the radio BLAS: you can only select none or one of them
     OPENBLAS=on: OpenBLAS blas implementation
     NETLIB=off: Blas implementation from Netlib
     ATLAS=off: ATLAS blas implementation
===> Use 'make config' to modify these settings
---End OPTIONS List---

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fortran@FreeBSD.org
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=======================<phase: check-sanity   >============================
===>  License GPLv2 LGPL21 accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   suitesparse-5.2.0_2 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-armv7-default-job-07] Installing pkg-1.10.5_5...
[head-armv7-default-job-07] Extracting pkg-1.10.5_5: .......... done
===>   suitesparse-5.2.0_2 depends on file: /usr/local/sbin/pkg - found
<snip>
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/AMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/AMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/AMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/AMD'
( cd ../../COLAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD'
( cd Lib    ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/COLAMD'
( cd ../../CCOLAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD'
( cd Lib    ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CCOLAMD'
( cd ../../CAMD ; gmake library )
gmake[4]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD'
( cd Lib    ; gmake )
gmake[5]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD/Lib'
gmake install INSTALL=/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared
gmake[6]: Entering directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD/Lib'
gmake[6]: Nothing to be done for 'install'.
gmake[6]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD/Lib'
gmake[5]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD/Lib'
gmake[4]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CAMD'
gcc8 -O2 -pipe  -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing  -fpic   -O3 -fexceptions -fPIC -fopenmp   -o cholmod_demo -I../../include  cholmod_demo.c  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/
 gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -lopenblasp -lm
gcc8 -O2 -pipe  -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing  -fpic   -O3 -fexceptions -fPIC -fopenmp   -o cholmod_l_demo -I../../include  cholmod_l_demo.c  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/
 lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -lopenblasp -lm
gcc8 -O2 -pipe  -I/usr/local/include -Wl,-rpath=/usr/local/lib/gcc8 -fno-strict-aliasing  -fpic   -O3 -fexceptions -fPIC -fopenmp   -o cholmod_simple -I../../include  cholmod_simple.c  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/lib -L../../lib -lcholmod -lamd -lcolamd -lsuitesparseconfig -lccolamd -lcamd -L/usr/local/lib -lmetis  -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -llapack -L/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse/lib -Wl,-rpath=/usr/local/lib/gcc8  -L/usr/local/
 lib/gcc8 -B/usr/local/bin -L/usr/local/lib -Wl,-rpath=/usr/local/lib/gcc8 -L/usr/local/lib/gcc8  -lopenblasp -lm
./cholmod_demo < Matrix/bcsstk01.tri

---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 3.57095e+09
norm (A,1)   = 3.57095e+09
CHOLMOD sparse:  A:  48-by-48, nz 224, upper.  OK
CHOLMOD dense:   B:  48-by-1,   OK
bnorm 1.97917
Analyze: flop 6009 lnz 489
Factorizing A
CHOLMOD factor:  L:  48-by-48  simplicial, LDL'. nzmax 489.  nz 489  OK
Ordering: AMD     fl/lnz       12.3  lnz/anz        2.2
ints in L:             782, doubles in L:             489
factor flops 6009 nnz(L)             489 (w/no amalgamation)
nnz(A*A'):             224
flops / nnz(L):      12.3
nnz(L) / nnz(A):      2.2
analyze cputime:        0.0000
factor  cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0
overall cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0 (100 trials)
solve2  cputime:         0.0000 mflop:      0.0 (100 trials)
peak memory usage:            0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 2.54e-19 4.93e-19 4.93e-19 5.89e-15 
residual  5.9e-05 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond     9.5e-06

./cholmod_l_demo < Matrix/bcsstk01.tri

---------------------------------- cholmod_l_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 3.57095e+09
norm (A,1)   = 3.57095e+09
CHOLMOD sparse:  A:  48-by-48, nz 224, upper.  OK
CHOLMOD dense:   B:  48-by-1,   OK
bnorm 1.97917
Analyze: flop 6009 lnz 489
Factorizing A
CHOLMOD factor:  L:  48-by-48  simplicial, LDL'. nzmax 489.  nz 489  OK
nmethods: 3
Ordering: AMD     fl/lnz       12.3  lnz/anz        2.2
ints in L:             782, doubles in L:             489
factor flops 6009 nnz(L)             489 (w/no amalgamation)
nnz(A*A'):             224
flops / nnz(L):      12.3
nnz(L) / nnz(A):      2.2
analyze cputime:        0.0000
factor  cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0
overall cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0 (100 trials)
solve2  cputime:         0.0000 mflop:      0.0 (100 trials)
peak memory usage:            0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 2.54e-19 4.93e-19 4.93e-19 5.89e-15 
residual  5.9e-05 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond     9.5e-06

./cholmod_demo < Matrix/lp_afiro.tri

---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 20.525
norm (A,1)   = 3.429
CHOLMOD sparse:  A:  27-by-51, nz 102, up/lo.  OK
CHOLMOD dense:   B:  27-by-1,   OK
bnorm 1.96296
Analyze: flop 529 lnz 113
Factorizing A*A'+beta*I
CHOLMOD factor:  L:  27-by-27  simplicial, LDL'. nzmax 113.  nz 113  OK
Ordering: AMD     fl/lnz        4.7  lnz/anz        1.3
ints in L:             280, doubles in L:             113
factor flops 529 nnz(L)             113 (w/no amalgamation)
nnz(A):                 90
flops / nnz(L):       4.7
nnz(L) / nnz(A):      1.3
analyze cputime:        0.0000
factor  cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0
overall cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0 (100 trials)
solve2  cputime:         0.0000 mflop:      0.0 (100 trials)
peak memory usage:            0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 7.43e-17 6.36e-17 6.36e-17 2.80e-17 
rcond     3.0e-02

./cholmod_l_demo < Matrix/lp_afiro.tri

---------------------------------- cholmod_l_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 20.525
norm (A,1)   = 3.429
CHOLMOD sparse:  A:  27-by-51, nz 102, up/lo.  OK
CHOLMOD dense:   B:  27-by-1,   OK
bnorm 1.96296
Analyze: flop 529 lnz 113
Factorizing A*A'+beta*I
CHOLMOD factor:  L:  27-by-27  simplicial, LDL'. nzmax 113.  nz 113  OK
nmethods: 3
Ordering: AMD     fl/lnz        4.7  lnz/anz        1.3
ints in L:             280, doubles in L:             113
factor flops 529 nnz(L)             113 (w/no amalgamation)
nnz(A):                 90
flops / nnz(L):       4.7
nnz(L) / nnz(A):      1.3
analyze cputime:        0.0000
factor  cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0
overall cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0 (100 trials)
solve2  cputime:         0.0000 mflop:      0.0 (100 trials)
peak memory usage:            0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 7.43e-17 6.36e-17 6.36e-17 2.80e-17 
rcond     3.0e-02

./cholmod_demo < Matrix/can___24.mtx
Fatal error 'thread 0xf380aa00 exits with resources held!' at line 320 in file /usr/local/poudriere/jails/head-armv7/usr/src/lib/libthr/thread/thr_exit.c (errno = 0)

---------------------------------- cholmod_demo:
cholmod version 3.0.12
SuiteSparse version 5.2.0
norm (A,inf) = 17
norm (A,1)   = 17
CHOLMOD sparse:  A:  24-by-24, nz 92, upper.  OK
CHOLMOD dense:   B:  24-by-1,   OK
bnorm 1.95833
Analyze: flop 656 lnz 120
Factorizing A
CHOLMOD factor:  L:  24-by-24  simplicial, LDL'. nzmax 120.  nz 120  OK
Ordering: AMD     fl/lnz        5.5  lnz/anz        1.3
ints in L:             269, doubles in L:             120
factor flops 656 nnz(L)             120 (w/no amalgamation)
nnz(A*A'):              92
flops / nnz(L):       5.5
nnz(L) / nnz(A):      1.3
analyze cputime:        0.0000
factor  cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0
overall cputime:         0.0000 mflop:      0.0
solve   cputime:         0.0000 mflop:      0.0 (100 trials)
solve2  cputime:         0.0000 mflop:      0.0 (100 trials)
peak memory usage:            0 (MB)
residual (|Ax-b|/(|A||x|+|b|)): 1.27e-16 1.07e-16 1.07e-16 1.23e-17 
residual  1.9e+00 (|Ax-b|/(|A||x|+|b|)) after iterative refinement
rcond     5.0e-01

gmake[3]: *** [Makefile:35: all] Segmentation fault (core dumped)
gmake[3]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CHOLMOD/Demo'
gmake[2]: *** [Makefile:15: all] Error 2
gmake[2]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared/CHOLMOD'
gmake[1]: *** [Makefile:21: go] Error 2
gmake[1]: Leaving directory '/wrkdirs/usr/ports/math/suitesparse/work/SuiteSparse_shared'
*** Error code 2

Stop.
make: stopped in /usr/ports/math/suitesparse



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