Date: Wed, 25 Dec 2019 13:35:08 GMT From: pkg-fallout@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - 113amd64-default][databases/py-tiledb] Failed for py37-tiledb-0.5.2 in configure Message-ID: <201912251335.xBPDZ8P3061788@beefy9.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sunpoet@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/databases/py-tiledb/Makefile 519894 2019-12-12 13:45:41Z sunpoet $ Log URL: http://beefy9.nyi.freebsd.org/data/113amd64-default/520767/logs/py37-tiledb-0.5.2.log Build URL: http://beefy9.nyi.freebsd.org/build.html?mastername=113amd64-default&build=520767 Log: =>> Building databases/py-tiledb build started at Wed Dec 25 13:34:45 UTC 2019 port directory: /usr/ports/databases/py-tiledb package name: py37-tiledb-0.5.2 building for: FreeBSD 113amd64-default-job-15 11.3-RELEASE-p5 FreeBSD 11.3-RELEASE-p5 amd64 maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: head/databases/py-tiledb/Makefile 519894 2019-12-12 13:45:41Z sunpoet $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300062 Jail OSVERSION: 1103000 Job Id: 15 ---Begin Environment--- SHELL=/bin/csh OSVERSION=1103000 UNAME_v=FreeBSD 11.3-RELEASE-p5 UNAME_r=11.3-RELEASE-p5 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/113amd64-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/113amd64-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=113amd64-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/113amd64-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR=py37 DEPENDS_ARGS= MAKE_ARGS= FLAVOR=py37 ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --MAINTAINER-- sunpoet@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh CMAKE_PREFIX_PATH="/usr/local" --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 XDG_CONFIG_HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 HOME=/wrkdirs/usr/ports/databases/py-tiledb/work-py37 TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/databases/py-tiledb/work-py37/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local CC="cc" CFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing " CPP="cpp" CPPFLAGS="-isystem /usr/local/include" LDFLAGS=" -fstack-protector-strong " LIBS="-L/usr/local/lib" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 55 5" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=11.3 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/tiledb" EXAMPLESDIR="share/examples/tiledb" DATADIR="share/tiledb" WWWDIR="www/tiledb" ETCDIR="etc/tiledb" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/tiledb DOCSDIR=/usr/local/share/doc/tiledb EXAMPLESDIR=/usr/local/share/examples/tiledb WWWDIR=/usr/local/www/tiledb ETCDIR=/usr/local/etc/tiledb --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _ALTCCVERSION_921dbbb2=none _CXXINTERNAL_acaad9ca=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin "/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_921dbbb2_58173849=yes CC_OUTPUT_921dbbb2_9bdba57c=yes CC_OUTPUT_921dbbb2_6a4fe7f5=yes CC_OUTPUT_921dbbb2_6bcac02b=yes CC_OUTPUT_921dbbb2_67d20829=yes CC_OUTPUT_921dbbb2_bfa62e83=yes CC_OUTPUT_921dbbb2_f0b4d593=yes CC_OUTPUT_921dbbb2_308abb44=yes CC_OUTPUT_921dbbb2_f00456e5=yes CC_OUTPUT_921dbbb2_65ad290d=yes CC_OUTPUT_921dbbb2_f2776b26=yes CC_OUTPUT_921dbbb2_b2657cc3=yes CC_OUTPUT_921dbbb2_380987f7=yes CC_OUTPUT_921dbbb2_160933ec=yes CC_OUTPUT_921dbbb2_fb62803b=yes _OBJC_CCVERSION_921dbbb2=FreeBSD clang version 8.0.0 (tags/RELEASE_800/final 356365) (based on LLVM 8.0.0) Target: x86_64-unknown-freebsd11.3 Thread model: posix InstalledDir: /usr/bin _OBJC_ALTCCVERSION_921dbbb2=none ARCH=amd64 OPSYS=FreeBSD _OSRELEASE=11.3-RELEASE-p5 OSREL=11.3 OSVERSION=1103000 PYTHONBASE=/usr/local HAVE_COMPAT_IA32_KERN=YES CONFIGURE_MAX_CMD_LEN=262144 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License MIT accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py37-tiledb-0.5.2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.12.0.txz [113amd64-default-job-15] Installing pkg-1.12.0... [113amd64-default-job-15] Extracting pkg-1.12.0: .......... done ===> py37-tiledb-0.5.2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py37-tiledb-0.5.2 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by py37-tiledb-0.5.2 for building =========================================================================== =======================<phase: checksum >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by py37-tiledb-0.5.2 for building => SHA256 Checksum OK for tiledb-0.5.2.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License MIT accepted by the user ===> Fetching all distfiles required by py37-tiledb-0.5.2 for building ===> Extracting for py37-tiledb-0.5.2 => SHA256 Checksum OK for tiledb-0.5.2.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py37-tiledb-0.5.2 =========================================================================== =======================<phase: build-depends >============================ ===> py37-tiledb-0.5.2 depends on package: py37-setuptools_scm>=1.5.4 - not found ===> Installing existing package /packages/All/py37-setuptools_scm-3.3.3.txz [113amd64-default-job-15] Installing py37-setuptools_scm-3.3.3... [113amd64-default-job-15] `-- Installing py37-setuptools-41.4.0_1... [113amd64-default-job-15] | `-- Installing python37-3.7.6... [113amd64-default-job-15] | | `-- Installing gettext-runtime-0.20.1... [113amd64-default-job-15] | | `-- Installing indexinfo-0.3.1... [113amd64-default-job-15] | | `-- Extracting indexinfo-0.3.1: .... done [113amd64-default-job-15] | | `-- Extracting gettext-runtime-0.20.1: .......... done [113amd64-default-job-15] | | `-- Installing libffi-3.2.1_3... [113amd64-default-job-15] | | `-- Extracting libffi-3.2.1_3: .......... done [113amd64-default-job-15] | | `-- Installing readline-8.0.0_1... [113amd64-default-job-15] | | `-- Extracting readline-8.0.0_1: .......... done [113amd64-default-job-15] | `-- Extracting python37-3.7.6: .......... done [113amd64-default-job-15] `-- Extracting py37-setuptools-41.4.0_1: .......... done [113amd64-default-job-15] Extracting py37-setuptools_scm-3.3.3: .......... done ===== Message from python37-3.7.6: -- Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: py37-gdbm databases/py-gdbm@py37 py37-sqlite3 databases/py-sqlite3@py37 py37-tkinter x11-toolkits/py-tkinter@py37 ===> py37-tiledb-0.5.2 depends on package: py37-setuptools_scm>=1.5.4 - found ===> Returning to build of py37-tiledb-0.5.2 ===> py37-tiledb-0.5.2 depends on package: py37-wheel>=0.30 - not found ===> Installing existing package /packages/All/py37-wheel-0.30.0_1.txz [113amd64-default-job-15] Installing py37-wheel-0.30.0_1... [113amd64-default-job-15] Extracting py37-wheel-0.30.0_1: .......... done ===> py37-tiledb-0.5.2 depends on package: py37-wheel>=0.30 - found ===> Returning to build of py37-tiledb-0.5.2 ===> py37-tiledb-0.5.2 depends on package: py37-numpy>0 - not found ===> Installing existing package /packages/All/py37-numpy-1.16.5_2,1.txz [113amd64-default-job-15] Installing py37-numpy-1.16.5_2,1... [113amd64-default-job-15] `-- Installing gcc9-9.2.0... [113amd64-default-job-15] | `-- Installing binutils-2.33.1,1... [113amd64-default-job-15] | `-- Extracting binutils-2.33.1,1: .......... done [113amd64-default-job-15] | `-- Installing gmp-6.1.2_1... [113amd64-default-job-15] | `-- Extracting gmp-6.1.2_1: .......... done [113amd64-default-job-15] | `-- Installing mpc-1.1.0_2... [113amd64-default-job-15] | | `-- Installing mpfr-4.0.2... [113amd64-default-job-15] | | `-- Extracting mpfr-4.0.2: .......... done [113amd64-default-job-15] | `-- Extracting mpc-1.1.0_2: ......... done [113amd64-default-job-15] `-- Extracting gcc9-9.2.0: .......... done [113amd64-default-job-15] `-- Installing openblas-0.2.20_11,1... [113amd64-default-job-15] `-- Extracting openblas-0.2.20_11,1: .......... done [113amd64-default-job-15] `-- Installing suitesparse-5.4.0_3... [113amd64-default-job-15] | `-- Installing metis-5.1.0_8... [113amd64-default-job-15] | `-- Extracting metis-5.1.0_8: .......... done [113amd64-default-job-15] | `-- Installing tbb-2019.8... [113amd64-default-job-15] | `-- Extracting tbb-2019.8: .......... done [113amd64-default-job-15] `-- Extracting suitesparse-5.4.0_3: .......... done [113amd64-default-job-15] Extracting py37-numpy-1.16.5_2,1: .......... done ===== Message from gcc9-9.2.0: -- To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc9 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. ===> py37-tiledb-0.5.2 depends on package: py37-numpy>0 - found ===> Returning to build of py37-tiledb-0.5.2 ===> py37-tiledb-0.5.2 depends on package: py37-setuptools>0 - found ===> py37-tiledb-0.5.2 depends on file: /usr/local/bin/python3.7 - found ===> py37-tiledb-0.5.2 depends on executable: cython-3.7 - not found ===> Installing existing package /packages/All/py37-cython-0.29.13_1.txz [113amd64-default-job-15] Installing py37-cython-0.29.13_1... [113amd64-default-job-15] Extracting py37-cython-0.29.13_1: .......... done ===> py37-tiledb-0.5.2 depends on executable: cython-3.7 - found ===> Returning to build of py37-tiledb-0.5.2 ===> py37-tiledb-0.5.2 depends on package: py37-setuptools>0 - found ===> py37-tiledb-0.5.2 depends on file: /usr/local/bin/python3.7 - found =========================================================================== =======================<phase: lib-depends >============================ ===> py37-tiledb-0.5.2 depends on shared library: libtiledb.so - not found ===> Installing existing package /packages/All/tiledb-1.7.1_1.txz [113amd64-default-job-15] Installing tiledb-1.7.1_1... [113amd64-default-job-15] `-- Installing catch-2.10.2... [113amd64-default-job-15] `-- Extracting catch-2.10.2: .......... done [113amd64-default-job-15] `-- Installing clipp-1.2.3... [113amd64-default-job-15] `-- Extracting clipp-1.2.3: .... done [113amd64-default-job-15] `-- Installing libfmt-6.1.2... [113amd64-default-job-15] `-- Extracting libfmt-6.1.2: .......... done [113amd64-default-job-15] `-- Installing liblz4-1.9.2,1... [113amd64-default-job-15] `-- Extracting liblz4-1.9.2,1: .......... done [113amd64-default-job-15] `-- Installing spdlog-1.4.2_2... [113amd64-default-job-15] `-- Extracting spdlog-1.4.2_2: .......... done [113amd64-default-job-15] `-- Installing zstd-1.4.4... [113amd64-default-job-15] `-- Extracting zstd-1.4.4: .......... done [113amd64-default-job-15] Extracting tiledb-1.7.1_1: .......... done ===> py37-tiledb-0.5.2 depends on shared library: libtiledb.so - found (/usr/local/lib/libtiledb.so) ===> Returning to build of py37-tiledb-0.5.2 =========================================================================== =======================<phase: configure >============================ ===> Configuring for py37-tiledb-0.5.2 *** Signal 4 Stop. make: stopped in /usr/ports/databases/py-tiledb
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