From owner-freebsd-pkg-fallout@freebsd.org Thu Dec 29 21:12:01 2016 Return-Path: Delivered-To: freebsd-pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id C43DDC96C35 for ; Thu, 29 Dec 2016 21:12:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from mailman.ysv.freebsd.org (mailman.ysv.freebsd.org [IPv6:2001:1900:2254:206a::50:5]) by mx1.freebsd.org (Postfix) with ESMTP id B1F5D1896 for ; Thu, 29 Dec 2016 21:12:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: by mailman.ysv.freebsd.org (Postfix) id AE679C96C32; Thu, 29 Dec 2016 21:12:01 +0000 (UTC) Delivered-To: pkg-fallout@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id AE127C96C30 for ; Thu, 29 Dec 2016 21:12:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy16.nyi.freebsd.org (beefy16.nyi.freebsd.org [IPv6:2610:1c1:1:6080::16:e3]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 7AD211894 for ; Thu, 29 Dec 2016 21:12:01 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy16.nyi.freebsd.org (localhost [127.0.0.1]) by beefy16.nyi.freebsd.org (8.15.2/8.15.2) with ESMTP id uBTLC0QJ001296 for ; Thu, 29 Dec 2016 21:12:00 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy16.nyi.freebsd.org (8.15.2/8.15.2/Submit) id uBTLC0jV001294; Thu, 29 Dec 2016 21:12:00 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Thu, 29 Dec 2016 21:12:00 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201612292112.uBTLC0jV001294@beefy16.nyi.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [package - 110mips64-quarterly][science/openbabel] Failed for openbabel-2.3.2_2 in configure/runaway X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.23 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Thu, 29 Dec 2016 21:12:01 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: makc@FreeBSD.org Last committer: swills@FreeBSD.org Ident: $FreeBSD: branches/2016Q4/science/openbabel/Makefile 413746 2016-04-21 16:43:14Z swills $ Log URL: http://beefy16.nyi.freebsd.org/data/110mips64-quarterly/429801/logs/openbabel-2.3.2_2.log Build URL: http://beefy16.nyi.freebsd.org/build.html?mastername=110mips64-quarterly&build=429801 Log: ====>> Building science/openbabel build started at Thu Dec 29 01:11:34 UTC 2016 port directory: /usr/ports/science/openbabel building for: FreeBSD 110mips64-quarterly-job-19 11.0-RELEASE-p6 FreeBSD 11.0-RELEASE-p6 r310419 mips maintained by: makc@FreeBSD.org Makefile ident: $FreeBSD: branches/2016Q4/science/openbabel/Makefile 413746 2016-04-21 16:43:14Z swills $ Poudriere version: 3.1.14 Host OSVERSION: 1200017 Jail OSVERSION: 1100122 Job Id: 19 ---Begin Environment--- SHELL=/bin/csh UNAME_p=mips64 UNAME_m=mips ABI_FILE=/usr/lib/crt1.o UNAME_v=FreeBSD 11.0-RELEASE-p6 r310419 UNAME_r=11.0-RELEASE-p6 BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=mips64 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/110mips64-quarterly/ref QEMU_EMULATING=1 UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=openbabel-2.3.2_2 OSREL=11.0 _OSRELEASE=11.0-RELEASE-p6 PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=28 PWD=/usr/local/poudriere/data/.m/110mips64-quarterly/ref/.p/pool MASTERNAME=110mips64-quarterly SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.14 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100122 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for openbabel-2.3.2_2: CAIRO=off: PNG support via cairo library PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/openbabel/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/openbabel/work HOME=/wrkdirs/usr/ports/science/openbabel/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -G0 -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS="" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -G0 -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION="2.3.2" CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 GTK2_VERSION="2.10.0" GTK3_VERSION="3.0.0" OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/openbabel" EXAMPLESDIR="share/examples/openbabel" DATADIR="share/openbabel" WWWDIR="www/openbabel" ETCDIR="etc/openbabel" --End PLIST_SUB-- --SUB_LIST-- CAIRO="@comment " NO_CAIRO="" PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/openbabel DOCSDIR=/usr/local/share/doc/openbabel EXAMPLESDIR=/usr/local/share/examples/openbabel WWWDIR=/usr/local/www/openbabel ETCDIR=/usr/local/etc/openbabel --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles MACHINE=mips MACHINE_ARCH=mips64 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- =================================================== =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.8.8.txz [110mips64-quarterly-job-19] Installing pkg-1.8.8... [110mips64-quarterly-job-19] Extracting pkg-1.8.8: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Fetching all distfiles required by openbabel-2.3.2_2 for building ===> Extracting for openbabel-2.3.2_2 => SHA256 Checksum OK for openbabel-2.3.2.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for openbabel-2.3.2_2 ===> Applying FreeBSD patches for openbabel-2.3.2_2 /nxb-bin/usr/bin/sed -i.bak -e '/pkgconfig/s,${LIB_INSTALL_DIR},libdata,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/CMakeLists.txt /nxb-bin/usr/bin/sed -i.bak -e 's,share/man,man,' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/doc/CMakeLists.txt /nxb-bin/usr/bin/sed -i.bak -e '/find_package(Cairo)/d' /wrkdirs/usr/ports/science/openbabel/work/openbabel-2.3.2/CMakeLists.txt =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - not found ===> Installing existing package /packages/All/eigen-3.2.9_1.txz [110mips64-quarterly-job-19] Installing eigen-3.2.9_1... [110mips64-quarterly-job-19] Extracting eigen-3.2.9_1: .......... done ===> openbabel-2.3.2_2 depends on file: /usr/local/include/eigen3/Eigen/Eigen - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - not found ===> Installing existing package /packages/All/cmake-3.6.2.txz [110mips64-quarterly-job-19] Installing cmake-3.6.2... [110mips64-quarterly-job-19] `-- Installing expat-2.2.0... [110mips64-quarterly-job-19] `-- Extracting expat-2.2.0: .......... done [110mips64-quarterly-job-19] `-- Installing cmake-modules-3.6.2... [110mips64-quarterly-job-19] `-- Extracting cmake-modules-3.6.2: .......... done [110mips64-quarterly-job-19] `-- Installing curl-7.52.1... [110mips64-quarterly-job-19] | `-- Installing ca_root_nss-3.28... [110mips64-quarterly-job-19] | `-- Extracting ca_root_nss-3.28: ....... done [110mips64-quarterly-job-19] `-- Extracting curl-7.52.1: .......... done [110mips64-quarterly-job-19] `-- Installing libarchive-3.2.1,1... [110mips64-quarterly-job-19] | `-- Installing liblz4-131... [110mips64-quarterly-job-19] | `-- Extracting liblz4-131: .......... done [110mips64-quarterly-job-19] | `-- Installing lzo2-2.09... [110mips64-quarterly-job-19] | `-- Extracting lzo2-2.09: .......... done [110mips64-quarterly-job-19] `-- Extracting libarchive-3.2.1,1: .......... done [110mips64-quarterly-job-19] `-- Installing jsoncpp-1.7.3... [110mips64-quarterly-job-19] `-- Extracting jsoncpp-1.7.3: .......... done [110mips64-quarterly-job-19] Extracting cmake-3.6.2: .......... done Message from ca_root_nss-3.28: ********************************* WARNING ********************************* FreeBSD does not, and can not warrant that the certification authorities whose certificates are included in this package have in any way been audited for trustworthiness or RFC 3647 compliance. Assessment and verification of trust is the complete responsibility of the system administrator. *********************************** NOTE ********************************** This package installs symlinks to support root certificates discovery by default for software that uses OpenSSL. This enables SSL Certificate Verification by client software without manual intervention. If you prefer to do this manually, replace the following symlinks with either an empty file or your site-local certificate bundle. * /etc/ssl/cert.pem * /usr/local/etc/ssl/cert.pem * /usr/local/openssl/cert.pem *************************************************************************** ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/cmake - found ===> Returning to build of openbabel-2.3.2_2 ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - not found ===> Installing existing package /packages/All/python27-2.7.12.txz [110mips64-quarterly-job-19] Installing python27-2.7.12... [110mips64-quarterly-job-19] `-- Installing libffi-3.2.1... [110mips64-quarterly-job-19] | `-- Installing indexinfo-0.2.5... [110mips64-quarterly-job-19] | `-- Extracting indexinfo-0.2.5: .... done [110mips64-quarterly-job-19] `-- Extracting libffi-3.2.1: .......... done [110mips64-quarterly-job-19] `-- Installing gettext-runtime-0.19.8.1... [110mips64-quarterly-job-19] `-- Extracting gettext-runtime-0.19.8.1: .......... done [110mips64-quarterly-job-19] `-- Installing readline-6.3.8... [110mips64-quarterly-job-19] `-- Extracting readline-6.3.8: .......... done [110mips64-quarterly-job-19] Extracting python27-2.7.12: .......... done Message from python27-2.7.12: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> openbabel-2.3.2_2 depends on file: /usr/local/bin/python2.7 - found ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - not found ===> Installing existing package /packages/All/libxml2-2.9.4.txz [110mips64-quarterly-job-19] Installing libxml2-2.9.4... [110mips64-quarterly-job-19] Extracting libxml2-2.9.4: .......... done ===> openbabel-2.3.2_2 depends on shared library: libxml2.so - found (/usr/local/lib/libxml2.so) ===> Returning to build of openbabel-2.3.2_2 =========================================================================== =================================================== ===> Configuring for openbabel-2.3.2_2 ===> Performing out-of-source build /bin/mkdir -p /wrkdirs/usr/ports/science/openbabel/work/.build ====>> Killing runaway build after 72000 seconds with no output