Date: Fri, 5 Dec 2014 05:21:43 GMT From: pkg-fallout@FreeBSD.org To: sunpoet@FreeBSD.org Cc: pkg-fallout@FreeBSD.org Subject: [package - head-amd64-default][science/cdo] Failed for cdo-1.6.4 in build Message-ID: <201412050521.sB55LhHp050783@beefy2.isc.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: sunpoet@FreeBSD.org Last committer: sunpoet@FreeBSD.org Ident: $FreeBSD: head/science/cdo/Makefile 360525 2014-07-04 02:49:34Z sunpoet $ Log URL: http://beefy2.isc.freebsd.org/data/head-amd64-default/2014-12-04_19h02m00s/logs/cdo-1.6.4.log Build URL: http://beefy2.isc.freebsd.org/build.html?mastername=head-amd64-default&build=2014-12-04_19h02m00s Log: ====>> Building science/cdo build started at Fri Dec 5 05:20:11 UTC 2014 port directory: /usr/ports/science/cdo building for: FreeBSD head-amd64-default-job-12 11.0-CURRENT FreeBSD 11.0-CURRENT r275434 amd64 maintained by: sunpoet@FreeBSD.org Makefile ident: $FreeBSD: head/science/cdo/Makefile 360525 2014-07-04 02:49:34Z sunpoet $ Poudriere version: 3.1-pre Host OSVERSION: 1100047 Jail OSVERSION: 1100048 !!! Jail is newer than host. (Jail: 1100048, Host: 1100047) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- OSVERSION=1100048 UNAME_v=FreeBSD 11.0-CURRENT r275434 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-amd64-default/ref PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=cdo-1.6.4 OLDPWD=/root PWD=/usr/local/poudriere/data/.m/head-amd64-default/ref/.p/pool MASTERNAME=head-amd64-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for cdo-1.6.4: CGRIBEX=on HDF5=on: HDF-5 data format support JASPER=on: JPEG 2000 support via JasPer NETCDF=on: NetCDF data format support PROJ=on: PROJ.4 cartographic projections support SZIP=on: Szip compression support UDUNITS=on: Unidata units library (udunits) support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-cgribex --disable-data --disable-extra --disable-grib --disable-ieg --disable-service --enable-cdi-lib --program-transform-name="" --with-zlib=/usr --with-cgribex=/usr/local --with-hdf5=/usr/local --with-jasper=/usr/local --with-netcdf=/usr/local --with-proj=/usr/local --with-szlib=/usr/local --with-udunits2=/usr/local --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" MAKE=gmake XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" XDG_DATA_HOME=/wrkdirs/usr/ports/science/cdo/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/cdo/work HOME=/wrkdirs/usr/ports/science/cdo/work TMPDIR="/tmp" NO_PIE=yes SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="-I/usr/local/include" LDFLAGS=" -L/usr/local/lib -pthread -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 0644" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --PLIST_SUB-- CGRIBEX="" NO_CGRIBEX="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/cdo" EXAMPLESDIR="share/examples/cdo" DATADIR="share/cdo" WWWDIR="www/cdo" ETCDIR="etc/cdo" --End PLIST_SUB-- --SUB_LIST-- CGRIBEX="" NO_CGRIBEX="@comment " HDF5="" NO_HDF5="@comment " JASPER="" NO_JASPER="@comment " NETCDF="" NO_NETCDF="@comment " PROJ="" NO_PROJ="@comment " SZIP="" NO_SZIP="@comment " UDUNITS="" NO_UDUNITS="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/cdo DOCSDIR=/usr/local/share/doc/cdo EXAMPLESDIR=/usr/local/share/examples/cdo WWWDIR=/usr/local/www/cdo ETCDIR=/usr/local/etc/cdo --End SUB_LIST-- ---Begin make.conf--- USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes #WITH_PKGNG=devel # clean-restricted ran via poudriere.conf NO_RESTRICTED #NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ ===> License GPLv2 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> cdo-1.6.4 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.3.8_3.txz [head-amd64-default-job-12] Installing pkg-1.3.8_3... done Message for pkg-1.3.8_3: If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of cdo-1.6.4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cdo-1.6.4 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cdo-1.6.4 for building => SHA256 Checksum OK for cdo-1.6.4.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv2 accepted by the user ===> Fetching all distfiles required by cdo-1.6.4 for building ===> Extracting for cdo-1.6.4 => SHA256 Checksum OK for cdo-1.6.4.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for cdo-1.6.4 ===> Applying FreeBSD patches for cdo-1.6.4 =========================================================================== =======================<phase: build-depends >============================ ===> cdo-1.6.4 depends on executable: gmake - not found ===> Verifying install for gmake in /usr/ports/devel/gmake ===> Installing existing package /packages/All/gmake-4.1_1.txz [head-amd64-default-job-12] Installing indexinfo-0.2... done [head-amd64-default-job-12] Installing gettext-runtime-0.19.3... done [head-amd64-default-job-12] Installing gmake-4.1_1... done ===> Returning to build of cdo-1.6.4 =========================================================================== =======================<phase: lib-depends >============================ <snip> mv -f .deps/cdo-Mergetime.Tpo .deps/cdo-Mergetime.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Merstat.o -MD -MP -MF .deps/cdo-Merstat.Tpo -c -o cdo-Merstat.o `test -f 'Merstat.c' || echo './'`Merstat.c mv -f .deps/cdo-Merstat.Tpo .deps/cdo-Merstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Monarith.o -MD -MP -MF .deps/cdo-Monarith.Tpo -c -o cdo-Monarith.o `test -f 'Monarith.c' || echo './'`Monarith.c mv -f .deps/cdo-Monarith.Tpo .deps/cdo-Monarith.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Mrotuv.o -MD -MP -MF .deps/cdo-Mrotuv.Tpo -c -o cdo-Mrotuv.o `test -f 'Mrotuv.c' || echo './'`Mrotuv.c mv -f .deps/cdo-Mrotuv.Tpo .deps/cdo-Mrotuv.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Mrotuvb.o -MD -MP -MF .deps/cdo-Mrotuvb.Tpo -c -o cdo-Mrotuvb.o `test -f 'Mrotuvb.c' || echo './'`Mrotuvb.c mv -f .deps/cdo-Mrotuvb.Tpo .deps/cdo-Mrotuvb.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Ninfo.o -MD -MP -MF .deps/cdo-Ninfo.Tpo -c -o cdo-Ninfo.o `test -f 'Ninfo.c' || echo './'`Ninfo.c mv -f .deps/cdo-Ninfo.Tpo .deps/cdo-Ninfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Nmltest.o -MD -MP -MF .deps/cdo-Nmltest.Tpo -c -o cdo-Nmltest.o `test -f 'Nmltest.c' || echo './'`Nmltest.c mv -f .deps/cdo-Nmltest.Tpo .deps/cdo-Nmltest.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Output.o -MD -MP -MF .deps/cdo-Output.Tpo -c -o cdo-Output.o `test -f 'Output.c' || echo './'`Output.c mv -f .deps/cdo-Output.Tpo .deps/cdo-Output.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Outputgmt.o -MD -MP -MF .deps/cdo-Outputgmt.Tpo -c -o cdo-Outputgmt.o `test -f 'Outputgmt.c' || echo './'`Outputgmt.c mv -f .deps/cdo-Outputgmt.Tpo .deps/cdo-Outputgmt.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Pack.o -MD -MP -MF .deps/cdo-Pack.Tpo -c -o cdo-Pack.o `test -f 'Pack.c' || echo './'`Pack.c mv -f .deps/cdo-Pack.Tpo .deps/cdo-Pack.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Pinfo.o -MD -MP -MF .deps/cdo-Pinfo.Tpo -c -o cdo-Pinfo.o `test -f 'Pinfo.c' || echo './'`Pinfo.c mv -f .deps/cdo-Pinfo.Tpo .deps/cdo-Pinfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Pressure.o -MD -MP -MF .deps/cdo-Pressure.Tpo -c -o cdo-Pressure.o `test -f 'Pressure.c' || echo './'`Pressure.c mv -f .deps/cdo-Pressure.Tpo .deps/cdo-Pressure.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Regres.o -MD -MP -MF .deps/cdo-Regres.Tpo -c -o cdo-Regres.o `test -f 'Regres.c' || echo './'`Regres.c mv -f .deps/cdo-Regres.Tpo .deps/cdo-Regres.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Remap.o -MD -MP -MF .deps/cdo-Remap.Tpo -c -o cdo-Remap.o `test -f 'Remap.c' || echo './'`Remap.c mv -f .deps/cdo-Remap.Tpo .deps/cdo-Remap.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Remapeta.o -MD -MP -MF .deps/cdo-Remapeta.Tpo -c -o cdo-Remapeta.o `test -f 'Remapeta.c' || echo './'`Remapeta.c mv -f .deps/cdo-Remapeta.Tpo .deps/cdo-Remapeta.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Replace.o -MD -MP -MF .deps/cdo-Replace.Tpo -c -o cdo-Replace.o `test -f 'Replace.c' || echo './'`Replace.c mv -f .deps/cdo-Replace.Tpo .deps/cdo-Replace.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Replacevalues.o -MD -MP -MF .deps/cdo-Replacevalues.Tpo -c -o cdo-Replacevalues.o `test -f 'Replacevalues.c' || echo './'`Replacevalues.c mv -f .deps/cdo-Replacevalues.Tpo .deps/cdo-Replacevalues.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Rhopot.o -MD -MP -MF .deps/cdo-Rhopot.Tpo -c -o cdo-Rhopot.o `test -f 'Rhopot.c' || echo './'`Rhopot.c mv -f .deps/cdo-Rhopot.Tpo .deps/cdo-Rhopot.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Rotuv.o -MD -MP -MF .deps/cdo-Rotuv.Tpo -c -o cdo-Rotuv.o `test -f 'Rotuv.c' || echo './'`Rotuv.c mv -f .deps/cdo-Rotuv.Tpo .deps/cdo-Rotuv.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Runpctl.o -MD -MP -MF .deps/cdo-Runpctl.Tpo -c -o cdo-Runpctl.o `test -f 'Runpctl.c' || echo './'`Runpctl.c mv -f .deps/cdo-Runpctl.Tpo .deps/cdo-Runpctl.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Runstat.o -MD -MP -MF .deps/cdo-Runstat.Tpo -c -o cdo-Runstat.o `test -f 'Runstat.c' || echo './'`Runstat.c mv -f .deps/cdo-Runstat.Tpo .deps/cdo-Runstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Scatter.o -MD -MP -MF .deps/cdo-Scatter.Tpo -c -o cdo-Scatter.o `test -f 'Scatter.c' || echo './'`Scatter.c mv -f .deps/cdo-Scatter.Tpo .deps/cdo-Scatter.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Seascount.o -MD -MP -MF .deps/cdo-Seascount.Tpo -c -o cdo-Seascount.o `test -f 'Seascount.c' || echo './'`Seascount.c mv -f .deps/cdo-Seascount.Tpo .deps/cdo-Seascount.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Seaspctl.o -MD -MP -MF .deps/cdo-Seaspctl.Tpo -c -o cdo-Seaspctl.o `test -f 'Seaspctl.c' || echo './'`Seaspctl.c mv -f .deps/cdo-Seaspctl.Tpo .deps/cdo-Seaspctl.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Seasstat.o -MD -MP -MF .deps/cdo-Seasstat.Tpo -c -o cdo-Seasstat.o `test -f 'Seasstat.c' || echo './'`Seasstat.c mv -f .deps/cdo-Seasstat.Tpo .deps/cdo-Seasstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Selbox.o -MD -MP -MF .deps/cdo-Selbox.Tpo -c -o cdo-Selbox.o `test -f 'Selbox.c' || echo './'`Selbox.c mv -f .deps/cdo-Selbox.Tpo .deps/cdo-Selbox.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Select.o -MD -MP -MF .deps/cdo-Select.Tpo -c -o cdo-Select.o `test -f 'Select.c' || echo './'`Select.c mv -f .deps/cdo-Select.Tpo .deps/cdo-Select.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Seloperator.o -MD -MP -MF .deps/cdo-Seloperator.Tpo -c -o cdo-Seloperator.o `test -f 'Seloperator.c' || echo './'`Seloperator.c mv -f .deps/cdo-Seloperator.Tpo .deps/cdo-Seloperator.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Selrec.o -MD -MP -MF .deps/cdo-Selrec.Tpo -c -o cdo-Selrec.o `test -f 'Selrec.c' || echo './'`Selrec.c mv -f .deps/cdo-Selrec.Tpo .deps/cdo-Selrec.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Seltime.o -MD -MP -MF .deps/cdo-Seltime.Tpo -c -o cdo-Seltime.o `test -f 'Seltime.c' || echo './'`Seltime.c mv -f .deps/cdo-Seltime.Tpo .deps/cdo-Seltime.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Selvar.o -MD -MP -MF .deps/cdo-Selvar.Tpo -c -o cdo-Selvar.o `test -f 'Selvar.c' || echo './'`Selvar.c mv -f .deps/cdo-Selvar.Tpo .deps/cdo-Selvar.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Set.o -MD -MP -MF .deps/cdo-Set.Tpo -c -o cdo-Set.o `test -f 'Set.c' || echo './'`Set.c mv -f .deps/cdo-Set.Tpo .deps/cdo-Set.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setbox.o -MD -MP -MF .deps/cdo-Setbox.Tpo -c -o cdo-Setbox.o `test -f 'Setbox.c' || echo './'`Setbox.c mv -f .deps/cdo-Setbox.Tpo .deps/cdo-Setbox.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setgatt.o -MD -MP -MF .deps/cdo-Setgatt.Tpo -c -o cdo-Setgatt.o `test -f 'Setgatt.c' || echo './'`Setgatt.c mv -f .deps/cdo-Setgatt.Tpo .deps/cdo-Setgatt.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setgrid.o -MD -MP -MF .deps/cdo-Setgrid.Tpo -c -o cdo-Setgrid.o `test -f 'Setgrid.c' || echo './'`Setgrid.c mv -f .deps/cdo-Setgrid.Tpo .deps/cdo-Setgrid.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Sethalo.o -MD -MP -MF .deps/cdo-Sethalo.Tpo -c -o cdo-Sethalo.o `test -f 'Sethalo.c' || echo './'`Sethalo.c mv -f .deps/cdo-Sethalo.Tpo .deps/cdo-Sethalo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setmiss.o -MD -MP -MF .deps/cdo-Setmiss.Tpo -c -o cdo-Setmiss.o `test -f 'Setmiss.c' || echo './'`Setmiss.c mv -f .deps/cdo-Setmiss.Tpo .deps/cdo-Setmiss.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setpartab.o -MD -MP -MF .deps/cdo-Setpartab.Tpo -c -o cdo-Setpartab.o `test -f 'Setpartab.c' || echo './'`Setpartab.c mv -f .deps/cdo-Setpartab.Tpo .deps/cdo-Setpartab.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setrcaname.o -MD -MP -MF .deps/cdo-Setrcaname.Tpo -c -o cdo-Setrcaname.o `test -f 'Setrcaname.c' || echo './'`Setrcaname.c mv -f .deps/cdo-Setrcaname.Tpo .deps/cdo-Setrcaname.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Settime.o -MD -MP -MF .deps/cdo-Settime.Tpo -c -o cdo-Settime.o `test -f 'Settime.c' || echo './'`Settime.c mv -f .deps/cdo-Settime.Tpo .deps/cdo-Settime.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Setzaxis.o -MD -MP -MF .deps/cdo-Setzaxis.Tpo -c -o cdo-Setzaxis.o `test -f 'Setzaxis.c' || echo './'`Setzaxis.c mv -f .deps/cdo-Setzaxis.Tpo .deps/cdo-Setzaxis.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Showinfo.o -MD -MP -MF .deps/cdo-Showinfo.Tpo -c -o cdo-Showinfo.o `test -f 'Showinfo.c' || echo './'`Showinfo.c mv -f .deps/cdo-Showinfo.Tpo .deps/cdo-Showinfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Sinfo.o -MD -MP -MF .deps/cdo-Sinfo.Tpo -c -o cdo-Sinfo.o `test -f 'Sinfo.c' || echo './'`Sinfo.c mv -f .deps/cdo-Sinfo.Tpo .deps/cdo-Sinfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Smooth9.o -MD -MP -MF .deps/cdo-Smooth9.Tpo -c -o cdo-Smooth9.o `test -f 'Smooth9.c' || echo './'`Smooth9.c mv -f .deps/cdo-Smooth9.Tpo .deps/cdo-Smooth9.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Sort.o -MD -MP -MF .deps/cdo-Sort.Tpo -c -o cdo-Sort.o `test -f 'Sort.c' || echo './'`Sort.c mv -f .deps/cdo-Sort.Tpo .deps/cdo-Sort.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Sorttimestamp.o -MD -MP -MF .deps/cdo-Sorttimestamp.Tpo -c -o cdo-Sorttimestamp.o `test -f 'Sorttimestamp.c' || echo './'`Sorttimestamp.c mv -f .deps/cdo-Sorttimestamp.Tpo .deps/cdo-Sorttimestamp.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Specinfo.o -MD -MP -MF .deps/cdo-Specinfo.Tpo -c -o cdo-Specinfo.o `test -f 'Specinfo.c' || echo './'`Specinfo.c mv -f .deps/cdo-Specinfo.Tpo .deps/cdo-Specinfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Spectral.o -MD -MP -MF .deps/cdo-Spectral.Tpo -c -o cdo-Spectral.o `test -f 'Spectral.c' || echo './'`Spectral.c mv -f .deps/cdo-Spectral.Tpo .deps/cdo-Spectral.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Spectrum.o -MD -MP -MF .deps/cdo-Spectrum.Tpo -c -o cdo-Spectrum.o `test -f 'Spectrum.c' || echo './'`Spectrum.c mv -f .deps/cdo-Spectrum.Tpo .deps/cdo-Spectrum.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Split.o -MD -MP -MF .deps/cdo-Split.Tpo -c -o cdo-Split.o `test -f 'Split.c' || echo './'`Split.c mv -f .deps/cdo-Split.Tpo .deps/cdo-Split.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Splitrec.o -MD -MP -MF .deps/cdo-Splitrec.Tpo -c -o cdo-Splitrec.o `test -f 'Splitrec.c' || echo './'`Splitrec.c mv -f .deps/cdo-Splitrec.Tpo .deps/cdo-Splitrec.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Splitsel.o -MD -MP -MF .deps/cdo-Splitsel.Tpo -c -o cdo-Splitsel.o `test -f 'Splitsel.c' || echo './'`Splitsel.c mv -f .deps/cdo-Splitsel.Tpo .deps/cdo-Splitsel.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Splittime.o -MD -MP -MF .deps/cdo-Splittime.Tpo -c -o cdo-Splittime.o `test -f 'Splittime.c' || echo './'`Splittime.c mv -f .deps/cdo-Splittime.Tpo .deps/cdo-Splittime.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Splityear.o -MD -MP -MF .deps/cdo-Splityear.Tpo -c -o cdo-Splityear.o `test -f 'Splityear.c' || echo './'`Splityear.c mv -f .deps/cdo-Splityear.Tpo .deps/cdo-Splityear.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-SSOpar.o -MD -MP -MF .deps/cdo-SSOpar.Tpo -c -o cdo-SSOpar.o `test -f 'SSOpar.c' || echo './'`SSOpar.c mv -f .deps/cdo-SSOpar.Tpo .deps/cdo-SSOpar.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Subtrend.o -MD -MP -MF .deps/cdo-Subtrend.Tpo -c -o cdo-Subtrend.o `test -f 'Subtrend.c' || echo './'`Subtrend.c mv -f .deps/cdo-Subtrend.Tpo .deps/cdo-Subtrend.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Tee.o -MD -MP -MF .deps/cdo-Tee.Tpo -c -o cdo-Tee.o `test -f 'Tee.c' || echo './'`Tee.c mv -f .deps/cdo-Tee.Tpo .deps/cdo-Tee.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Templates.o -MD -MP -MF .deps/cdo-Templates.Tpo -c -o cdo-Templates.o `test -f 'Templates.c' || echo './'`Templates.c mv -f .deps/cdo-Templates.Tpo .deps/cdo-Templates.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Test.o -MD -MP -MF .deps/cdo-Test.Tpo -c -o cdo-Test.o `test -f 'Test.c' || echo './'`Test.c mv -f .deps/cdo-Test.Tpo .deps/cdo-Test.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Tests.o -MD -MP -MF .deps/cdo-Tests.Tpo -c -o cdo-Tests.o `test -f 'Tests.c' || echo './'`Tests.c mv -f .deps/cdo-Tests.Tpo .deps/cdo-Tests.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timcount.o -MD -MP -MF .deps/cdo-Timcount.Tpo -c -o cdo-Timcount.o `test -f 'Timcount.c' || echo './'`Timcount.c mv -f .deps/cdo-Timcount.Tpo .deps/cdo-Timcount.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timpctl.o -MD -MP -MF .deps/cdo-Timpctl.Tpo -c -o cdo-Timpctl.o `test -f 'Timpctl.c' || echo './'`Timpctl.c mv -f .deps/cdo-Timpctl.Tpo .deps/cdo-Timpctl.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timselpctl.o -MD -MP -MF .deps/cdo-Timselpctl.Tpo -c -o cdo-Timselpctl.o `test -f 'Timselpctl.c' || echo './'`Timselpctl.c mv -f .deps/cdo-Timselpctl.Tpo .deps/cdo-Timselpctl.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timselstat.o -MD -MP -MF .deps/cdo-Timselstat.Tpo -c -o cdo-Timselstat.o `test -f 'Timselstat.c' || echo './'`Timselstat.c mv -f .deps/cdo-Timselstat.Tpo .deps/cdo-Timselstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timsort.o -MD -MP -MF .deps/cdo-Timsort.Tpo -c -o cdo-Timsort.o `test -f 'Timsort.c' || echo './'`Timsort.c mv -f .deps/cdo-Timsort.Tpo .deps/cdo-Timsort.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timstat.o -MD -MP -MF .deps/cdo-Timstat.Tpo -c -o cdo-Timstat.o `test -f 'Timstat.c' || echo './'`Timstat.c mv -f .deps/cdo-Timstat.Tpo .deps/cdo-Timstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timstat2.o -MD -MP -MF .deps/cdo-Timstat2.Tpo -c -o cdo-Timstat2.o `test -f 'Timstat2.c' || echo './'`Timstat2.c mv -f .deps/cdo-Timstat2.Tpo .deps/cdo-Timstat2.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Timstat3.o -MD -MP -MF .deps/cdo-Timstat3.Tpo -c -o cdo-Timstat3.o `test -f 'Timstat3.c' || echo './'`Timstat3.c mv -f .deps/cdo-Timstat3.Tpo .deps/cdo-Timstat3.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Tinfo.o -MD -MP -MF .deps/cdo-Tinfo.Tpo -c -o cdo-Tinfo.o `test -f 'Tinfo.c' || echo './'`Tinfo.c mv -f .deps/cdo-Tinfo.Tpo .deps/cdo-Tinfo.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Tocomplex.o -MD -MP -MF .deps/cdo-Tocomplex.Tpo -c -o cdo-Tocomplex.o `test -f 'Tocomplex.c' || echo './'`Tocomplex.c mv -f .deps/cdo-Tocomplex.Tpo .deps/cdo-Tocomplex.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Transpose.o -MD -MP -MF .deps/cdo-Transpose.Tpo -c -o cdo-Transpose.o `test -f 'Transpose.c' || echo './'`Transpose.c mv -f .deps/cdo-Transpose.Tpo .deps/cdo-Transpose.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Trend.o -MD -MP -MF .deps/cdo-Trend.Tpo -c -o cdo-Trend.o `test -f 'Trend.c' || echo './'`Trend.c mv -f .deps/cdo-Trend.Tpo .deps/cdo-Trend.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Trms.o -MD -MP -MF .deps/cdo-Trms.Tpo -c -o cdo-Trms.o `test -f 'Trms.c' || echo './'`Trms.c mv -f .deps/cdo-Trms.Tpo .deps/cdo-Trms.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Tstepcount.o -MD -MP -MF .deps/cdo-Tstepcount.Tpo -c -o cdo-Tstepcount.o `test -f 'Tstepcount.c' || echo './'`Tstepcount.c mv -f .deps/cdo-Tstepcount.Tpo .deps/cdo-Tstepcount.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Vardup.o -MD -MP -MF .deps/cdo-Vardup.Tpo -c -o cdo-Vardup.o `test -f 'Vardup.c' || echo './'`Vardup.c mv -f .deps/cdo-Vardup.Tpo .deps/cdo-Vardup.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Vargen.o -MD -MP -MF .deps/cdo-Vargen.Tpo -c -o cdo-Vargen.o `test -f 'Vargen.c' || echo './'`Vargen.c mv -f .deps/cdo-Vargen.Tpo .deps/cdo-Vargen.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Varrms.o -MD -MP -MF .deps/cdo-Varrms.Tpo -c -o cdo-Varrms.o `test -f 'Varrms.c' || echo './'`Varrms.c mv -f .deps/cdo-Varrms.Tpo .deps/cdo-Varrms.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Vertint.o -MD -MP -MF .deps/cdo-Vertint.Tpo -c -o cdo-Vertint.o `test -f 'Vertint.c' || echo './'`Vertint.c mv -f .deps/cdo-Vertint.Tpo .deps/cdo-Vertint.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Vertstat.o -MD -MP -MF .deps/cdo-Vertstat.Tpo -c -o cdo-Vertstat.o `test -f 'Vertstat.c' || echo './'`Vertstat.c mv -f .deps/cdo-Vertstat.Tpo .deps/cdo-Vertstat.Po cc -DHAVE_CONFIG_H -I. -I../libcdi/src -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -I/usr/include -I/usr/local/include -I/usr/local/include -I/usr/local/include -O2 -pipe -DPTHREAD_MUTEXATTR_CONDATTR -fstack-protector -fno-strict-aliasing -D_THREAD_SAFE -MT cdo-Vertwind.o -MD -MP -MF .deps/cdo-Vertwind.Tpo -c -o cdo-Vertwind.o `test -f 'Vertwind.c' || echo './'`Vertwind.c Instruction does not dominate all uses! %arrayidx = getelementptr inbounds double* %9, i64 %indvars.iv765 %bc828 = bitcast double* %arrayidx to i8* Instruction does not dominate all uses! %arrayidx = getelementptr inbounds double* %9, i64 %indvars.iv765 %bc = bitcast double* %arrayidx to i8* Broken module found, compilation aborted! Stack dump: 0. Program arguments: /usr/bin/cc -cc1 -triple x86_64-unknown-freebsd11.0 -emit-obj -disable-free -main-file-name Vertwind.c -mrelocation-model static -mdisable-fp-elim -relaxed-aliasing -masm-verbose -mconstructor-aliases -munwind-tables -target-cpu x86-64 -coverage-file /wrkdirs/usr/ports/science/cdo/work/cdo-1.6.4/src/cdo-Vertwind.o -resource-dir /usr/bin/../lib/clang/3.4.1 -dependency-file .deps/cdo-Vertwind.Tpo -sys-header-deps -MP -MT cdo-Vertwind.o -D HAVE_CONFIG_H -D PTHREAD_MUTEXATTR_CONDATTR -D _THREAD_SAFE -I . -I ../libcdi/src -I /usr/local/include -I /usr/local/include -I /usr/local/include -I /usr/local/include -I /usr/include -I /usr/local/include -I /usr/local/include -I /usr/local/include -O2 -fdebug-compilation-dir /wrkdirs/usr/ports/science/cdo/work/cdo-1.6.4/src -ferror-limit 19 -fmessage-length 0 -stack-protector 1 -mstackrealign -fobjc-runtime=gnustep -fdiagnostics-show-option -vectorize-loops -vectorize-slp -o cdo-Vertwind.o -x c Vertwind.c 1. <eof> parser at end of file 2. Code generation 3. Running pass 'Function Pass Manager' on module 'Vertwind.c'. 4. Running pass 'Module Verifier' on function '@Vertwind' cc: error: unable to execute command: Abort trap (core dumped) cc: error: clang frontend command failed due to signal (use -v to see invocation) FreeBSD clang version 3.4.1 (tags/RELEASE_34/dot1-final 208032) 20140512 Target: x86_64-unknown-freebsd11.0 Thread model: posix cc: note: diagnostic msg: PLEASE submit a bug report to https://bugs.freebsd.org/submit/ and include the crash backtrace, preprocessed source, and associated run script. cc: note: diagnostic msg: ******************** PLEASE ATTACH THE FOLLOWING FILES TO THE BUG REPORT: Preprocessed source(s) and associated run script(s) are located at: cc: note: diagnostic msg: /tmp/Vertwind-af1c54.c cc: note: diagnostic msg: /tmp/Vertwind-af1c54.sh cc: note: diagnostic msg: ******************** Makefile:3244: recipe for target 'cdo-Vertwind.o' failed gmake[3]: *** [cdo-Vertwind.o] Error 254 gmake[3]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.6.4/src' Makefile:636: recipe for target 'all' failed gmake[2]: *** [all] Error 2 gmake[2]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.6.4/src' Makefile:440: recipe for target 'all-recursive' failed gmake[1]: *** [all-recursive] Error 1 gmake[1]: Leaving directory '/wrkdirs/usr/ports/science/cdo/work/cdo-1.6.4' *** Error code 1 Stop. make: stopped in /usr/ports/science/cdo
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