From owner-svn-ports-all@FreeBSD.ORG Tue Oct 30 20:31:15 2012 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [69.147.83.52]) by hub.freebsd.org (Postfix) with ESMTP id F2FDAD64; Tue, 30 Oct 2012 20:31:14 +0000 (UTC) (envelope-from pawel@FreeBSD.org) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:4f8:fff6::2c]) by mx1.freebsd.org (Postfix) with ESMTP id DA81E8FC08; Tue, 30 Oct 2012 20:31:14 +0000 (UTC) Received: from svn.freebsd.org (localhost [127.0.0.1]) by svn.freebsd.org (8.14.4/8.14.4) with ESMTP id q9UKVElU069578; Tue, 30 Oct 2012 20:31:14 GMT (envelope-from pawel@svn.freebsd.org) Received: (from pawel@localhost) by svn.freebsd.org (8.14.4/8.14.4/Submit) id q9UKVEDR069575; Tue, 30 Oct 2012 20:31:14 GMT (envelope-from pawel@svn.freebsd.org) Message-Id: <201210302031.q9UKVEDR069575@svn.freebsd.org> From: Pawel Pekala Date: Tue, 30 Oct 2012 20:31:14 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r306709 - in head/biology/seaview: . files X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Tue, 30 Oct 2012 20:31:15 -0000 Author: pawel Date: Tue Oct 30 20:31:14 2012 New Revision: 306709 URL: http://svn.freebsd.org/changeset/ports/306709 Log: - Update to version 4.4.0 - Mark MAKE_JOBS_SAFE - Make dependency on print/pdflib optional - Switch to PLIST_FILES While here: - Add missing deps - Add desktop entry PR: ports/172498 Submitted by: KATO Tsuguru Feature safe: yes Deleted: head/biology/seaview/files/ head/biology/seaview/pkg-plist Modified: head/biology/seaview/Makefile head/biology/seaview/distinfo Modified: head/biology/seaview/Makefile ============================================================================== --- head/biology/seaview/Makefile Tue Oct 30 20:29:52 2012 (r306708) +++ head/biology/seaview/Makefile Tue Oct 30 20:31:14 2012 (r306709) @@ -2,31 +2,69 @@ # $FreeBSD$ PORTNAME= seaview -PORTVERSION= 2006.02.13 -PORTREVISION= 9 +PORTVERSION= 4.4.0 +PORTEPOCH= 1 CATEGORIES= biology -MASTER_SITES= ftp://pbil.univ-lyon1.fr/pub/mol_phylogeny/seaview/archive/ -DISTNAME= ${PORTNAME}${PORTVERSION:S/.//g} -EXTRACT_SUFX= .tar +MASTER_SITES= http://pbil.univ-lyon1.fr/software/seaview_data/archive/ +DISTNAME= ${PORTNAME}_${PORTVERSION} MAINTAINER= ports@FreeBSD.org COMMENT= Multiple DNA/protein sequence alignment editor -LIB_DEPENDS= fltk.1:${PORTSDIR}/x11-toolkits/fltk \ - pdf.6:${PORTSDIR}/print/pdflib - -NO_WRKSUBDIR= yes -EXTRACT_CMD= ${CAT} -EXTRACT_BEFORE_ARGS= # +LIB_DEPENDS= pthread-stubs:${PORTSDIR}/devel/libpthread-stubs \ + jpeg:${PORTSDIR}/graphics/jpeg \ + png15:${PORTSDIR}/graphics/png \ + freetype:${PORTSDIR}/print/freetype2 \ + expat:${PORTSDIR}/textproc/expat2 \ + fontconfig:${PORTSDIR}/x11-fonts/fontconfig \ + fltk:${PORTSDIR}/x11-toolkits/fltk \ + xcb:${PORTSDIR}/x11/libxcb + +OPTIONS_DEFINE= PDFLIB +OPTIONS_DEFAULT=PDFLIB +PDFLIB_DESC= PDFlib support + +WRKSRC= ${WRKDIR}/${PORTNAME} + +USE_XORG= x11 xau xdmcp xext xft xinerama xrender +USE_GMAKE= yes +MAKE_ENV= HELPFILE='-DDEFAULT_HELPFILE=\"${DATADIR}/seaview.html\"' \ + PHYMLNAME='-DPHYMLNAME=\"phyml\"' \ + IFLTK='-I${LOCALBASE}/include' \ + LFLTK='-L${LOCALBASE}/lib' \ + USE_XFT='-DUSE_XFT' \ + OPT="${CFLAGS}" ALL_TARGET= ${PORTNAME} +MAKE_JOBS_SAFE= yes + +DESKTOP_ENTRIES="${PORTNAME}" "${COMMENT}" "" "${PORTNAME}" \ + "Application;Science;Biology;" "true" + +PLIST_FILES= bin/seaview %%DATADIR%%/seaview.html +PLIST_DIRS= %%DATADIR%% -CFLAGS+= -D HAVE_DIRENT_H \ - -D DEFAULT_HELPFILE=${PREFIX}/lib/X11/${PORTNAME}/seaview.help +.include + +.if ${PORT_OPTIONS:MPDFLIB} +LIB_DEPENDS+= pdf:${PORTSDIR}/print/pdflib +MAKE_ENV+= LPDF='-L${LOCALBASE}/lib -lpdf' +.else +MAKE_ENV+= PDF_PS_FLAGS='-DNO_PDF' +.endif + +post-patch: + @${REINPLACE_CMD} -e \ + 's|^PDF_PS_FLAGS |#PDF_PS_FLAGS | ; \ + s|^FLTK |#FLTK | ; \ + s|^USE_XFT |#USE_XFT | ; \ + s|^CC |#CC | ; \ + s|^CXX |#CXX | ; \ + s|^OPT |#OPT | ; \ + s|-lpthread|${PTHREAD_LIBS}|' ${WRKSRC}/Makefile do-install: - ${INSTALL_PROGRAM} ${WRKDIR}/${PORTNAME} ${PREFIX}/bin - ${INSTALL_SCRIPT} ${WRKDIR}/seaview_align.sh ${PREFIX}/bin - @${MKDIR} ${PREFIX}/lib/X11/${PORTNAME} - ${INSTALL_DATA} ${WRKDIR}/seaview.help ${PREFIX}/lib/X11/${PORTNAME} + ${INSTALL_PROGRAM} ${WRKSRC}/${PORTNAME} ${PREFIX}/bin + @${MKDIR} ${DATADIR} + ${INSTALL_DATA} ${WRKSRC}/seaview.html ${DATADIR} .include Modified: head/biology/seaview/distinfo ============================================================================== --- head/biology/seaview/distinfo Tue Oct 30 20:29:52 2012 (r306708) +++ head/biology/seaview/distinfo Tue Oct 30 20:31:14 2012 (r306709) @@ -1,2 +1,2 @@ -SHA256 (seaview20060213.tar) = 3b6cd132a8c9c2d29881e3bcb14a85b9a52524a5974317a9df09d9e15ffc7776 -SIZE (seaview20060213.tar) = 573952 +SHA256 (seaview_4.4.0.tar.gz) = e1dcaef67cb93da63bfa6fa102042340297c18055928645f03defb6547e9ede3 +SIZE (seaview_4.4.0.tar.gz) = 309611