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Date:      Thu, 2 May 2019 22:40:03 GMT
From:      pkg-fallout@FreeBSD.org
To:        yuri@FreeBSD.org
Cc:        pkg-fallout@FreeBSD.org
Subject:   [package - head-amd64-default][science/py-phono3py] Failed for py27-phono3py-1.13.3.27_1 in build
Message-ID:  <201905022240.x42Me3DV015544@beefy12.nyi.freebsd.org>

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You are receiving this mail as a port that you maintain
is failing to build on the FreeBSD package build server.
Please investigate the failure and submit a PR to fix
build.

Maintainer:     yuri@FreeBSD.org
Last committer: gerald@FreeBSD.org
Ident:          $FreeBSD: head/science/py-phono3py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Log URL:        http://beefy12.nyi.freebsd.org/data/head-amd64-default/p500629_s347003/logs/py27-phono3py-1.13.3.27_1.log
Build URL:      http://beefy12.nyi.freebsd.org/build.html?mastername=head-amd64-default&build=p500629_s347003
Log:

=>> Building science/py-phono3py
build started at Thu May  2 22:39:13 UTC 2019
port directory: /usr/ports/science/py-phono3py
package name: py27-phono3py-1.13.3.27_1
building for: FreeBSD head-amd64-default-job-13 13.0-CURRENT FreeBSD 13.0-CURRENT 1300021 amd64
maintained by: yuri@FreeBSD.org
Makefile ident:      $FreeBSD: head/science/py-phono3py/Makefile 487272 2018-12-12 01:35:33Z gerald $
Poudriere version: 3.2.8-3-g02cc9753
Host OSVERSION: 1300018
Jail OSVERSION: 1300021
Job Id: 13




!!! Jail is newer than host. (Jail: 1300021, Host: 1300018) !!!
!!! This is not supported. !!!
!!! Host kernel must be same or newer than jail. !!!
!!! Expect build failures. !!!



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=======================<phase: check-sanity   >============================
===>  License BSD3CLAUSE accepted by the user
===========================================================================
=======================<phase: pkg-depends    >============================
===>   py27-phono3py-1.13.3.27_1 depends on file: /usr/local/sbin/pkg - not found
===>   Installing existing package /packages/All/pkg-1.10.5_5.txz
[head-amd64-default-job-13] Installing pkg-1.10.5_5...
[head-amd64-default-job-13] Extracting pkg-1.10.5_5: .......... done
===>   py27-phono3py-1.13.3.27_1 depends on file: /usr/local/sbin/pkg - found
===>   Returning to build of py27-phono3py-1.13.3.27_1
===========================================================================
=======================<phase: fetch-depends  >============================
===========================================================================
=======================<phase: fetch          >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_1 for building
===========================================================================
=======================<phase: checksum       >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_1 for building
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: extract-depends>============================
===========================================================================
=======================<phase: extract        >============================
===>  License BSD3CLAUSE accepted by the user
===> Fetching all distfiles required by py27-phono3py-1.13.3.27_1 for building
===>  Extracting for py27-phono3py-1.13.3.27_1
=> SHA256 Checksum OK for phono3py-1.13.3.27.tar.gz.
===========================================================================
=======================<phase: patch-depends  >============================
===========================================================================
=======================<phase: patch          >============================
===>  Patching for py27-phono3py-1.13.3.27_1
===========================================================================
=======================<phase: build-depends  >============================
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-numpy>0 - not found
===>   Installing existing package /packages/All/py27-numpy-1.16.1_2,1.txz
[head-amd64-default-job-13] Installing py27-numpy-1.16.1_2,1...
[head-amd64-default-job-13] `-- Installing blas-3.5.0_5...
<snip>
FreeBSD does not, and can not warrant that the certification authorities
whose certificates are included in this package have in any way been
audited for trustworthiness or RFC 3647 compliance.

Assessment and verification of trust is the complete responsibility of the
system administrator.

*********************************** NOTE **********************************

This package installs symlinks to support root certificates discovery by
default for software that uses OpenSSL.

This enables SSL Certificate Verification by client software without manual
intervention.

If you prefer to do this manually, replace the following symlinks with
either an empty file or your site-local certificate bundle.

  * /etc/ssl/cert.pem
  * /usr/local/etc/ssl/cert.pem
  * /usr/local/openssl/cert.pem

***************************************************************************
Message from trousers-0.3.14_2:

To run tcsd automatically, add the following line to /etc/rc.conf:

tcsd_enable="YES"

You might want to edit /usr/local/etc/tcsd.conf to reflect your setup.

If you want to use tcsd with software TPM emulator, use the following
configuration in /etc/rc.conf:

tcsd_enable="YES"
tcsd_mode="emulator"
tpmd_enable="YES"

To use TPM, add your_account to '_tss' group like following:

# pw groupmod _tss -m your_account
Message from dejavu-2.37_1:

Make sure that the freetype module is loaded.  If it is not, add the following
line to the "Modules" section of your X Windows configuration file:

	Load "freetype"

Add the following line to the "Files" section of X Windows configuration file:

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Note: your X Windows configuration file is typically /etc/X11/XF86Config
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Message from xmlcatmgr-2.2_2:

The following catalogs are installed:

 1) /usr/local/share/sgml/catalog

   The top level catalog for SGML stuff.  It is not changed
   by any ports/packages except textproc/xmlcatmgr.

 2) /usr/local/share/sgml/catalog.ports

   This catalog is for handling SGML stuff installed under
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 3) /usr/local/share/xml/catalog

   The top level catalog for XML stuff.  It is not changed
   by any ports/packages except textproc/xmlcatmgr.

 4) /usr/local/share/xml/catalog.ports

   This catalog is for handling XML stuff installed under
   /usr/local/share/xml.  It is changed by ports/packages.
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-matplotlib>0 - found
===>   Returning to build of py27-phono3py-1.13.3.27_1
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-phonopy>=1.13.2 - not found
===>   Installing existing package /packages/All/py27-phonopy-1.13.2.107_1.txz
[head-amd64-default-job-13] Installing py27-phonopy-1.13.2.107_1...
[head-amd64-default-job-13] `-- Installing py27-yaml-5.1...
[head-amd64-default-job-13] `-- Extracting py27-yaml-5.1: .......... done
[head-amd64-default-job-13] Extracting py27-phonopy-1.13.2.107_1: .......... done
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-phonopy>=1.13.2 - found
===>   Returning to build of py27-phono3py-1.13.3.27_1
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-yaml>0 - found
===>   py27-phono3py-1.13.3.27_1 depends on file: /usr/local/include/lapacke.h - not found
===>   Installing existing package /packages/All/lapacke-3.5.0_7.txz
[head-amd64-default-job-13] Installing lapacke-3.5.0_7...
[head-amd64-default-job-13] Extracting lapacke-3.5.0_7: .......... done
===>   py27-phono3py-1.13.3.27_1 depends on file: /usr/local/include/lapacke.h - found
===>   Returning to build of py27-phono3py-1.13.3.27_1
===>   py27-phono3py-1.13.3.27_1 depends on executable: cython-2.7 - not found
===>   Installing existing package /packages/All/py27-cython-0.29_1.txz
[head-amd64-default-job-13] Installing py27-cython-0.29_1...
[head-amd64-default-job-13] Extracting py27-cython-0.29_1: .......... done
===>   py27-phono3py-1.13.3.27_1 depends on executable: cython-2.7 - found
===>   Returning to build of py27-phono3py-1.13.3.27_1
===>   py27-phono3py-1.13.3.27_1 depends on package: py27-setuptools>0 - found
===>   py27-phono3py-1.13.3.27_1 depends on file: /usr/local/bin/python2.7 - found
===========================================================================
=======================<phase: lib-depends    >============================
===>   py27-phono3py-1.13.3.27_1 depends on shared library: libomp.so - found (/usr/lib/libomp.so)
===>   py27-phono3py-1.13.3.27_1 depends on shared library: libopenblas.so - found (/usr/local/lib/libopenblas.so)
===========================================================================
=======================<phase: configure      >============================
===>  Configuring for py27-phono3py-1.13.3.27_1
setuptools is used.
running config
===========================================================================
=======================<phase: build          >============================
===>  Building for py27-phono3py-1.13.3.27_1
setuptools is used.
running build
running build_py
creating build
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/file_IO.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
copying phono3py/version.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/create_supercells.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/translate_settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/phono3py_argparse.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/settings.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/create_force_constants.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/triplets_info.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/show_log.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
copying phono3py/cui/phono3py_yaml.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/cui
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/alm_wrapper.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
copying phono3py/other/isotope.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/other
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
copying phono3py/phonon/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
copying phono3py/phonon/solver.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon
creating build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/collision_matrix.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/displacement_fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/real_to_reciprocal.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity_LBTE.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/gruneisen.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/__init__.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/interaction.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/imag_self_energy.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/frequency_shift.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/fc3.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/joint_dos.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/conductivity_RTA.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/triplets.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
copying phono3py/phonon3/reciprocal_to_normal.py -> build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/phonon3
running build_ext
building 'phono3py._lapackepy' extension
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/c
creating build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/_lapackepy.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/_lapackepy.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/_lapackepy.c:38:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/dynmat.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/dynmat.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonon.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonon.o -fopenmp -DMULTITHREADED_BLAS
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_array.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_array.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_array.c:36:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/phonoc_utils.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_utils.o -fopenmp -DMULTITHREADED_BLAS
In file included from c/harmonic/phonoc_utils.c:37:
In file included from c/harmonic_h/phonoc_array.h:39:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/arrayobject.h:4:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarrayobject.h:12:
In file included from /usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/ndarraytypes.h:1822:
/usr/local/lib/python2.7/site-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: "Using deprecated NumPy API, disable it with "          "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-W#warnings]
#warning "Using deprecated NumPy API, disable it with " \
 ^
1 warning generated.
cc -DNDEBUG -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include -fPIC -Ic/harmonic_h -I/usr/local/lib/python2.7/site-packages/numpy/core/include -I/usr/local/include/python2.7 -c c/harmonic/lapack_wrapper.c -o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/lapack_wrapper.o -fopenmp -DMULTITHREADED_BLAS
cc -shared -fstack-protector-strong -O2 -pipe -fstack-protector-strong -isystem /usr/local/include -fno-strict-aliasing -isystem /usr/local/include build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/_lapackepy.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/dynmat.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonon.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_array.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/phonoc_utils.o build/temp.freebsd-13.0-CURRENT-amd64-2.7/c/harmonic/lapack_wrapper.o -L/usr/local/lib -lpython2.7 -o build/lib.freebsd-13.0-CURRENT-amd64-2.7/phono3py/_lapackepy.so -lgomp -lopenblas
ld: error: unable to find library -lgomp
cc: error: linker command failed with exit code 1 (use -v to see invocation)
error: command 'cc' failed with exit status 1
*** Error code 1

Stop.
make: stopped in /usr/ports/science/py-phono3py



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