Date: Thu, 7 Oct 2004 13:44:03 GMT From: Choe@FreeBSD.org, Cheng-Dae <whitekid@gmail.com> To: freebsd-gnats-submit@FreeBSD.org Subject: ports/72422: biology/paml update to 3.14 Message-ID: <200410071344.i97Di303021117@www.freebsd.org> Resent-Message-ID: <200410071350.i97DoXxM036865@freefall.freebsd.org>
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>Number: 72422
>Category: ports
>Synopsis: biology/paml update to 3.14
>Confidential: no
>Severity: non-critical
>Priority: medium
>Responsible: freebsd-ports-bugs
>State: open
>Quarter:
>Keywords:
>Date-Required:
>Class: change-request
>Submitter-Id: current-users
>Arrival-Date: Thu Oct 07 13:50:33 GMT 2004
>Closed-Date:
>Last-Modified:
>Originator: Choe, Cheng-Dae
>Release: FreeBSD 5.3-BETA7 i386
>Organization:
>Environment:
System: FreeBSD comdongin.com 5.3-BETA7 FreeBSD 5.3-BETA7 #0: Thu Oct 7 03:38:39 KST 2004 root@comdongin.com:/usr/obj/data/src/sys/CDI i386
>Description:
biology/paml update to 3.14
>How-To-Repeat:
N/A
>Fix:
diff -ruN paml.bak/Makefile paml/Makefile
--- paml.bak/Makefile Thu Oct 7 15:18:53 2004
+++ paml/Makefile Thu Oct 7 22:37:19 2004
@@ -6,7 +6,7 @@
#
PORTNAME= paml
-PORTVERSION= 3.13
+PORTVERSION= 3.14
CATEGORIES= biology
MASTER_SITES= ftp://abacus.gene.ucl.ac.uk/pub/paml/
DISTNAME= ${PORTNAME}${PORTVERSION}
diff -ruN paml.bak/distinfo paml/distinfo
--- paml.bak/distinfo Thu Oct 7 15:18:53 2004
+++ paml/distinfo Thu Oct 7 22:38:29 2004
@@ -1,2 +1,2 @@
-MD5 (paml3.13.tar.gz) = a08ebd57332c9fe605439bf0025817bd
-SIZE (paml3.13.tar.gz) = 691916
+MD5 (paml3.14.tar.gz) = 233ef39b09e406dc41fb81e14997b764
+SIZE (paml3.14.tar.gz) = 1744383
diff -ruN paml.bak/pkg-plist paml/pkg-plist
--- paml.bak/pkg-plist Thu Oct 7 15:18:53 2004
+++ paml/pkg-plist Thu Oct 7 22:34:58 2004
@@ -4,7 +4,6 @@
bin/chi2
bin/codeml
bin/evolver
-bin/mcmctree
bin/pamp
bin/yn00
%%PORTDOCS%%%%DOCSDIR%%/pamlDOC.pdf
>Release-Note:
>Audit-Trail:
>Unformatted:
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