Date: Fri, 20 Mar 2020 15:33:43 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/agrum] Failed for agrum-0.17.1 in build Message-ID: <202003201533.02KFXgaT082549@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: yuri@FreeBSD.org Last committer: yuri@FreeBSD.org Ident: $FreeBSD: head/science/agrum/Makefile 528615 2020-03-18 00:09:11Z yuri $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p528679_s359111/logs/agrum-0.17.1.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p528679_s359111 Log: =>> Building science/agrum build started at Fri Mar 20 15:26:12 UTC 2020 port directory: /usr/ports/science/agrum package name: agrum-0.17.1 building for: FreeBSD head-armv6-default-job-12 13.0-CURRENT FreeBSD 13.0-CURRENT 1300084 arm maintained by: yuri@FreeBSD.org Makefile ident: $FreeBSD: head/science/agrum/Makefile 528615 2020-03-18 00:09:11Z yuri $ Poudriere version: 3.2.8-5-gc81843e5 Host OSVERSION: 1300076 Jail OSVERSION: 1300084 Job Id: 12 !!! Jail is newer than host. (Jail: 1300084, Host: 1300076) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1300084 UNAME_v=FreeBSD 13.0-CURRENT 1300084 UNAME_r=13.0-CURRENT BLOCKSIZE=K STATUS=1 HOME=/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin LOCALBASE=/usr/local QEMU_EMULATING=1 USER=root LIBEXECPREFIX=/usr/local/libexec/poudriere POUDRIERE_VERSION=3.2.8-5-gc81843e5 MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref POUDRIERE_BUILD_TYPE=bulk PACKAGE_BUILDING=yes SAVED_TERM= PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool P_PORTS_FEATURES=FLAVORS SELECTED_OPTIONS MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere OLDPWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p SCRIPTPATH=/usr/local/share/poudriere/bulk.sh POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= FLAVOR= DEPENDS_ARGS= MAKE_ARGS= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ===> The following configuration options are available for agrum-0.17.1: ODBC=off: ODBC database backend OPENMP=on: Parallel processing support via OpenMP PYTHON=on: Python bindings or support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --MAINTAINER-- yuri@FreeBSD.org --End MAINTAINER-- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python3.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/agrum/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/agrum/work HOME=/wrkdirs/usr/ports/science/agrum/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/agrum/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/agrum/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/agrum/work HOME=/wrkdirs/usr/ports/science/agrum/work TMPDIR="/tmp" PATH=/wrkdirs/usr/ports/science/agrum/work/.bin:/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES ADDR2LINE="/usr/local/bin/addr2line" AR="/usr/local/bin/ar" AS="/usr/local/bin/as" CPPFILT="/usr/local/bin/c++filt" GPROF="/usr/local/bin/gprof" LD="/usr/local/bin/ld" NM="/usr/local/bin/nm" OBJCOPY="/usr/local/bin/objcopy" OBJDUMP="/usr/local/bin/objdump" RANLIB="/usr/local/bin/ranlib" READELF="/usr/local/bin/readelf" SIZE="/usr/local/bin/size" STRINGS="/usr/local/bin/strings" DESTDIR=/wrkdirs/usr/ports/science/agrum/work/stage PREFIX=/usr/local LOCALBASE=/usr/local CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector-str ong -fuse-ld=bfd " LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -fstack-protector-strong -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- VERSION=0.17.1 ODBC="@comment " NO_ODBC="" OPENMP="" NO_OPENMP="@comment " PYTHON="" NO_PYTHON="@comment " PYTHON_VER_MAJ=3 CMAKE_BUILD_TYPE="release" PYTHON_INCLUDEDIR=include/python3.7m PYTHON_LIBDIR=lib/python3.7 PYTHON_PLATFORM=freebsd13 PYTHON_SITELIBDIR=lib/python3.7/site-packages PYTHON_SUFFIX=37 PYTHON_VER=3.7 PYTHON_VERSION=python3.7 PYTHON2="@comment " PYTHON3="" OSREL=13.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local LIB32DIR=lib DOCSDIR="share/doc/agrum" EXAMPLESDIR="share/examples/agrum" DATADIR="share/agrum" WWWDIR="www/agrum" ETCDIR="etc/agrum" --End PLIST_SUB-- --SUB_LIST-- ODBC="@comment " NO_ODBC="" OPENMP="" NO_OPENMP="@comment " PYTHON="" NO_PYTHON="@comment " PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/agrum DOCSDIR=/usr/local/share/doc/agrum EXAMPLESDIR=/usr/local/share/examples/agrum WWWDIR=/usr/local/www/agrum ETCDIR=/usr/local/etc/agrum --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes PACKAGE_BUILDING_FLAVORS=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### _CCVERSION_9d218390=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _ALTCCVERSION_9d218390=none _CXXINTERNAL_9c45a5b1=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin "/nxb-bin/usr/bin/ld" "--eh-frame-hdr" "-dynamic-linker" "/libexec/ld-elf.so.1" "--hash-style=both" "--enable-new-dtags" "-o" "a.out" "/usr/lib/crt1.o" "/usr/lib/crti.o" "/usr/lib/crtbegin.o" "-L/usr/lib" "/dev/null" "-lc++" "-lm" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "-lc" "-lgcc" "--as-needed" "-lgcc_s" "--no-as-needed" "/usr/lib/crtend.o" "/usr/lib/crtn.o" CC_OUTPUT_9d218390_58173849=yes CC_OUTPUT_9d218390_9bdba57c=yes CC_OUTPUT_9d218390_6a4fe7f5=yes CC_OUTPUT_9d218390_6bcac02b=yes CC_OUTPUT_9d218390_67d20829=yes CC_OUTPUT_9d218390_bfa62e83=yes CC_OUTPUT_9d218390_f0b4d593=yes CC_OUTPUT_9d218390_308abb44=yes CC_OUTPUT_9d218390_f00456e5=yes CC_OUTPUT_9d218390_65ad290d=yes CC_OUTPUT_9d218390_f2776b26=yes CC_OUTPUT_9d218390_b2657cc3=yes CC_OUTPUT_9d218390_380987f7=yes CC_OUTPUT_9d218390_160933ec=yes CC_OUTPUT_9d218390_fb62803b=yes _OBJC_CCVERSION_9d218390=FreeBSD clang version 10.0.0 (git@github.com:llvm/llvm-project.git llvmorg-10.0.0-rc4-5-g52c365aa9ca) Target: armv6-unknown-freebsd13.0-gnueabihf Thread model: posix InstalledDir: /nxb-bin/usr/bin _OBJC_ALTCCVERSION_9d218390=none ARCH=armv6 OPSYS=FreeBSD _OSRELEASE=13.0-CURRENT OSREL=13.0 OSVERSION=1300084 PYTHONBASE=/usr/local CONFIGURE_MAX_CMD_LEN=524288 HAVE_PORTS_ENV=1 #### Misc Poudriere #### GID=0 UID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> agrum-0.17.1 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.13.2.txz [head-armv6-default-job-12] Installing pkg-1.13.2... [head-armv6-default-job-12] Extracting pkg-1.13.2: .......... done ===> agrum-0.17.1 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of agrum-0.17.1 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user => agrumery-aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e_GL0.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch https://gitlab.com/agrumery/aGrUM/repository/9007924bc6b5f3784614f99ba2bf1fcd6487658e/archive.tar.gz?dummy=/agrumery-aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e_GL0.tar.gz <snip> /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:92:28: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~VariableElimination() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: in instantiation of template class 'gum::VariableElimination<double>' requested here extern template class VariableElimination< double >; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: mark 'gum::VariableElimination<double>' as 'final' to silence this warning 5 warnings generated. [45/467] /nxb-bin/usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src -I. -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits -std=c++14 -DSWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT src/CMakeFiles/agrum.dir/agrum/learning/scores_and_tests/scoreMDL.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/learning/scores_and_tests/scoreMDL.cpp.o.d -o src/CMakeFiles/agrum.dir/agrum/learning/sco res_and_tests/scoreMDL.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.cpp In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreBIC.h:36: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:44: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/DAG.h:32: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/diGraph.h:38: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart.h:296: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:21: warning: loop variable 'arc' of type 'const gum::Arc' creates a copy from type 'const gum::Arc' [-Wrange-loop-construct] for (const auto arc: set) ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:10: note: use reference type 'const gum::Arc &' to prevent copying for (const auto arc: set) ^~~~~~~~~~~~~~~ & In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreBIC.h:36: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:45: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorParser.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorSet.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorWithBN.h:36: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:127:17: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~BayesNet() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:78:9: note: mark 'BayesNet<GUM_SCALAR>' as 'final' to silence this warning class BayesNet: public IBayesNet< GUM_SCALAR > { ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:127:17: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~BayesNet() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:692:25: note: in instantiation of template class 'gum::BayesNet<double>' requested here extern template class BayesNet< double >; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:692:25: note: mark 'gum::BayesNet<double>' as 'final' to silence this warning In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreMDL.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scoreBIC.h:36: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:45: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorParser.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorSet.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorWithBN.h:37: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:92:28: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~VariableElimination() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:70:9: note: mark 'VariableElimination<GUM_SCALAR>' as 'final' to silence this warning class VariableElimination: public JointTargetedInference< GUM_SCALAR > { ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:92:28: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~VariableElimination() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: in instantiation of template class 'gum::VariableElimination<double>' requested here extern template class VariableElimination< double >; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: mark 'gum::VariableElimination<double>' as 'final' to silence this warning 5 warnings generated. [46/467] /nxb-bin/usr/bin/c++ -Dagrum_EXPORTS -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src -I. -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits -std=c++14 -DSWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT src/CMakeFiles/agrum.dir/agrum/learning/scores_and_tests/scorefNML.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/learning/scores_and_tests/scorefNML.cpp.o.d -o src/CMakeFiles/agrum.dir/agrum/learning/s cores_and_tests/scorefNML.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.cpp In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:44: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/DAG.h:32: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/diGraph.h:38: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart.h:296: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:21: warning: loop variable 'arc' of type 'const gum::Arc' creates a copy from type 'const gum::Arc' [-Wrange-loop-construct] for (const auto arc: set) ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:10: note: use reference type 'const gum::Arc &' to prevent copying for (const auto arc: set) ^~~~~~~~~~~~~~~ & In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:45: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorParser.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorSet.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorWithBN.h:36: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:127:17: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~BayesNet() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:78:9: note: mark 'BayesNet<GUM_SCALAR>' as 'final' to silence this warning class BayesNet: public IBayesNet< GUM_SCALAR > { ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:127:17: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~BayesNet() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:692:25: note: in instantiation of template class 'gum::BayesNet<double>' requested here extern template class BayesNet< double >; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/BayesNet.h:692:25: note: mark 'gum::BayesNet<double>' as 'final' to silence this warning In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/scorefNML.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/score.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/scores_and_tests/recordCounter.h:45: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorParser.h:33: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorSet.h:37: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/database/DBRowGeneratorWithBN.h:37: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:92:28: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~VariableElimination() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:70:9: note: mark 'VariableElimination<GUM_SCALAR>' as 'final' to silence this warning class VariableElimination: public JointTargetedInference< GUM_SCALAR > { ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:92:28: warning: class with destructor marked 'final' cannot be inherited from [-Wfinal-dtor-non-final-class] ~VariableElimination() final; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: in instantiation of template class 'gum::VariableElimination<double>' requested here extern template class VariableElimination< double >; ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/BN/inference/variableElimination.h:354:25: note: mark 'gum::VariableElimination<double>' as 'final' to silence this warning 5 warnings generated. 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-I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits -std=c++14 -DSWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT src/CMakeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGenerator4DiGraph.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGenerator4DiGraph.cpp.o.d -o src/C MakeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGenerator4DiGraph.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGenerator4DiGraph.cpp In file included from 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'const gum::Arc' creates a copy from type 'const gum::Arc' [-Wrange-loop-construct] for (const auto arc: set) ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:10: note: use reference type 'const gum::Arc &' to prevent copying for (const auto arc: set) ^~~~~~~~~~~~~~~ & 1 warning generated. 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-I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest-3.10-1 -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits/cxxtest -I/wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/testunits -std=c++14 -DSWIG -Wall -pedantic -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -pthread -O2 -pipe -fstack-protector-strong -fno-strict-aliasing -fPIC -MD -MT src/CMakeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp.o -MF src/CMakeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp.o.d -o src/CM akeFiles/agrum.dir/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp.o -c /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.h:56: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/diGraph.h:38: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart.h:296: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:21: warning: loop variable 'arc' of type 'const gum::Arc' creates a copy from type 'const gum::Arc' [-Wrange-loop-construct] for (const auto arc: set) ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/graphs/parts/arcGraphPart_inl.h:92:10: note: use reference type 'const gum::Arc &' to prevent copying for (const auto arc: set) ^~~~~~~~~~~~~~~ & In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.cpp:30: In file included from /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph.h:238: /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/learning/structureUtils/graphChangesGeneratorOnSubDiGraph_tpl.h:215:19: error: no viable overloaded '=' _tail_nodes = node; ~~~~~~~~~~~ ^ ~~~~ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/core/set.h:245:24: note: candidate function not viable: no known conversion from 'gum::NodeId' (aka 'unsigned int') to 'const Set<unsigned int, std::__1::allocator<unsigned int> >' for 1st argument Set< Key, Alloc >& operator=(const Set< Key, Alloc >& from); ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/core/set.h:254:24: note: candidate template ignored: could not match 'Set<unsigned int, type-parameter-0-0>' against 'unsigned int' Set< Key, Alloc >& operator=(const Set< Key, OtherAlloc >& from); ^ /wrkdirs/usr/ports/science/agrum/work/aGrUM-9007924bc6b5f3784614f99ba2bf1fcd6487658e-9007924bc6b5f3784614f99ba2bf1fcd6487658e/src/agrum/core/set.h:261:24: note: candidate function not viable: no known conversion from 'gum::NodeId' (aka 'unsigned int') to 'Set<unsigned int, std::__1::allocator<unsigned int> >' for 1st argument Set< Key, Alloc >& operator=(Set< Key, Alloc >&& from); ^ 1 warning and 1 error generated. ninja: build stopped: subcommand failed. *** Error code 1 Stop. make: stopped in /usr/ports/science/agrum
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