Date: Mon, 25 Apr 2016 06:31:21 GMT From: pkg-fallout@FreeBSD.org To: mauricio@arareko.net Cc: pkg-fallout@FreeBSD.org Subject: [package - head-i386-default][biology/py-biopython] Failed for py27-biopython-1.66 in fetch Message-ID: <201604250631.u3P6VLL4067404@beefy3.nyi.freebsd.org>
next in thread | raw e-mail | index | archive | help
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: mauricio@arareko.net Last committer: wen@FreeBSD.org Ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Log URL: http://beefy3.nyi.freebsd.org/data/head-i386-default/p413919_s298525/logs/py27-biopython-1.66.log Build URL: http://beefy3.nyi.freebsd.org/build.html?mastername=head-i386-default&build=p413919_s298525 Log: ====>> Building biology/py-biopython build started at Mon Apr 25 06:31:18 UTC 2016 port directory: /usr/ports/biology/py-biopython building for: FreeBSD head-i386-default-job-05 11.0-CURRENT FreeBSD 11.0-CURRENT r298525 i386 maintained by: mauricio@arareko.net Makefile ident: $FreeBSD: head/biology/py-biopython/Makefile 413489 2016-04-17 03:55:01Z wen $ Poudriere version: 3.1.12 Host OSVERSION: 1100102 Jail OSVERSION: 1100106 !!! Jail is newer than host. (Jail: 1100106, Host: 1100102) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=i386 UNAME_m=i386 UNAME_v=FreeBSD 11.0-CURRENT r298525 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 OPSYS=FreeBSD ARCH=i386 LINUX_OSRELEASE=2.6.32 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-i386-default/ref UID=0 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin _JAVA_VERSION_LIST_REGEXP=1.6\|1.7\|1.8\|1.6+\|1.7+\|1.8+ POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-biopython-1.66 OSREL=11.0 _OSRELEASE=11.0-CURRENT PYTHONBASE=/usr/local OLDPWD=/ _SMP_CPUS=24 PWD=/usr/local/poudriere/data/.m/head-i386-default/ref/.p/pool MASTERNAME=head-i386-default SCRIPTPREFIX=/usr/local/share/poudriere _JAVA_VENDOR_LIST_REGEXP=openjdk\|oracle\|sun USER=root HOME=/root POUDRIERE_VERSION=3.1.12 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh CONFIGURE_MAX_CMD_LEN=262144 LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local PACKAGE_BUILDING=yes _JAVA_OS_LIST_REGEXP=native\|linux OSVERSION=1100106 ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for py27-biopython-1.66: REPORTLAB=on: PDF support in Bio.Graphics module ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/biology/py-biopython/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/biology/py-biopython/work HOME=/wrkdirs/usr/ports/biology/py-biopython/work TMPDIR="/tmp" NO_PIE=yes WITHOUT_DEBUG_FILES=yes WITHOUT_KERNEL_SYMBOLS=yes SHELL=/bin/sh NO_LINT=YES LDSHARED="cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS=" -fstack-protector" LIBS="" CXX="c++" CXXFLAGS="-O2 -pipe -fstack-protector -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 444" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd11 PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_VER=2.7 PYTHON_VERSION=python2.7 OSREL=11.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/biopython" EXAMPLESDIR="share/examples/biopython" DATADIR="share/biopython" WWWDIR="www/biopython" ETCDIR="etc/biopython" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/biopython DOCSDIR=/usr/local/share/doc/biopython EXAMPLESDIR=/usr/local/share/examples/biopython WWWDIR=/usr/local/www/biopython ETCDIR=/usr/local/etc/biopython --End SUB_LIST-- ---Begin make.conf--- MACHINE=i386 MACHINE_ARCH=i386 ARCH=${MACHINE_ARCH} USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### DISABLE_MAKE_JOBS=poudriere ---End make.conf--- =======================<phase: check-sanity >============================ =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.7.2.txz [head-i386-default-job-05] Installing pkg-1.7.2... [head-i386-default-job-05] Extracting pkg-1.7.2: .......... done ===> py27-biopython-1.66 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-biopython-1.66 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ => biopython-1.66.tar.gz doesn't seem to exist in /portdistfiles/. => Attempting to fetch http://www.biopython.org/DIST/biopython-1.66.tar.gz fetch: http://www.biopython.org/DIST/biopython-1.66.tar.gz: Not Found => Attempting to fetch http://distcache.FreeBSD.org/ports-distfiles/biopython-1.66.tar.gz fetch: http://distcache.FreeBSD.org/ports-distfiles/biopython-1.66.tar.gz: Not Found => Couldn't fetch it - please try to retrieve this => port manually into /portdistfiles/ and try again. *** Error code 1 Stop. make: stopped in /usr/ports/biology/py-biopython
Want to link to this message? Use this URL: <https://mail-archive.FreeBSD.org/cgi/mid.cgi?201604250631.u3P6VLL4067404>