From owner-svn-ports-all@FreeBSD.ORG Sun Nov 2 14:14:01 2014 Return-Path: Delivered-To: svn-ports-all@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1.2 with cipher AECDH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id 4C2CCE31; Sun, 2 Nov 2014 14:14:01 +0000 (UTC) Received: from svn.freebsd.org (svn.freebsd.org [IPv6:2001:1900:2254:2068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mx1.freebsd.org (Postfix) with ESMTPS id 37E82A38; Sun, 2 Nov 2014 14:14:01 +0000 (UTC) Received: from svn.freebsd.org ([127.0.1.70]) by svn.freebsd.org (8.14.9/8.14.9) with ESMTP id sA2EE1NO034285; Sun, 2 Nov 2014 14:14:01 GMT (envelope-from pawel@FreeBSD.org) Received: (from pawel@localhost) by svn.freebsd.org (8.14.9/8.14.9/Submit) id sA2EE0Ho034279; Sun, 2 Nov 2014 14:14:00 GMT (envelope-from pawel@FreeBSD.org) Message-Id: <201411021414.sA2EE0Ho034279@svn.freebsd.org> X-Authentication-Warning: svn.freebsd.org: pawel set sender to pawel@FreeBSD.org using -f From: Pawel Pekala Date: Sun, 2 Nov 2014 14:14:00 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r372070 - head/biology/phylip X-SVN-Group: ports-head MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-BeenThere: svn-ports-all@freebsd.org X-Mailman-Version: 2.1.18-1 Precedence: list List-Id: SVN commit messages for the ports tree List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Sun, 02 Nov 2014 14:14:01 -0000 Author: pawel Date: Sun Nov 2 14:13:59 2014 New Revision: 372070 URL: https://svnweb.freebsd.org/changeset/ports/372070 QAT: https://qat.redports.org/buildarchive/r372070/ Log: - Update to version 3.696 - Add LICENSE, no EXAMPLES included in distfile now - Rework pkg-descr, remove author info - it's available on homepage PR: 194163 Submitted by: tkato432@yahoo.com Modified: head/biology/phylip/Makefile head/biology/phylip/distinfo head/biology/phylip/pkg-descr Modified: head/biology/phylip/Makefile ============================================================================== --- head/biology/phylip/Makefile Sun Nov 2 13:59:24 2014 (r372069) +++ head/biology/phylip/Makefile Sun Nov 2 14:13:59 2014 (r372070) @@ -2,8 +2,7 @@ # $FreeBSD$ PORTNAME= phylip -PORTVERSION= 3.695 -PORTREVISION= 3 +PORTVERSION= 3.696 PORTEPOCH= 1 CATEGORIES= biology MASTER_SITES= http://evolution.gs.washington.edu/phylip/download/ @@ -11,13 +10,16 @@ MASTER_SITES= http://evolution.gs.washin MAINTAINER= ports@FreeBSD.org COMMENT= Phylogeny Inference Package +LICENSE= BSD2CLAUSE +LICENSE_FILES= ${WRKSRC}/COPYRIGHT + BUILD_DEPENDS= bash:${PORTSDIR}/shells/bash BUILD_WRKSRC= ${WRKSRC}/src INSTALL_WRKSRC= ${WRKSRC}/src -USE_XORG= x11 xaw xt USES= gmake +USE_XORG= x11 xaw xt MAKEFILE= Makefile.unx MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} -DUNX" \ DFLAGS="${CFLAGS} -DX -I${LOCALBASE}/include" \ @@ -25,28 +27,23 @@ MAKE_ARGS= CC="${CC}" CFLAGS="${CFLAGS} USE_LDCONFIG= yes PORTDOCS= * -PORTEXAMPLES= * - -OPTIONS_DEFINE= DOCS EXAMPLES -pre-install: - @(cd ${WRKSRC}/src && ${STRIP_CMD} libdrawtree.so libdrawgram.so) +OPTIONS_DEFINE= DOCS post-install: @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -not -name '*.jar' \ -not -name '*.unx' -not -name 'font*' -not -name '*.so' \ - -exec ${INSTALL_PROGRAM} "{}" "${STAGEDIR}${PREFIX}/bin/{}" \; + | ${XARGS} -J % ${INSTALL_PROGRAM} % ${STAGEDIR}${PREFIX}/bin @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -name "*.so" \ - -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${PREFIX}/lib/{}" \; + | ${XARGS} -J % ${INSTALL_LIB} % ${STAGEDIR}${PREFIX}/lib @${MKDIR} ${STAGEDIR}${DATADIR} @cd ${WRKSRC}/exe && \ ${FIND} . -maxdepth 1 -not -type d -name 'font*' \ - -exec ${INSTALL_DATA} "{}" "${STAGEDIR}${DATADIR}/{}" \; + | ${XARGS} -J % ${INSTALL_DATA} % ${STAGEDIR}${DATADIR} @${MKDIR} ${STAGEDIR}${DOCSDIR} - @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . ${STAGEDIR}${DOCSDIR}) - @${MKDIR} ${STAGEDIR}${EXAMPLESDIR} - @(cd ${WRKSRC}/exe && ${COPYTREE_SHARE} testdata ${STAGEDIR}${EXAMPLESDIR}) + @(cd ${WRKSRC}/doc && ${COPYTREE_SHARE} . \ + ${STAGEDIR}${DOCSDIR}) .include Modified: head/biology/phylip/distinfo ============================================================================== --- head/biology/phylip/distinfo Sun Nov 2 13:59:24 2014 (r372069) +++ head/biology/phylip/distinfo Sun Nov 2 14:13:59 2014 (r372070) @@ -1,2 +1,2 @@ -SHA256 (phylip-3.695.tar.gz) = d843ecee0d6bcf57f4f23dc8ef064a668907cc69b4edd7626ff7afdd8d0de370 -SIZE (phylip-3.695.tar.gz) = 4364684 +SHA256 (phylip-3.696.tar.gz) = cd0a452ca51922142ad06d585e2ef98565536a227cbd2bd47a2243af72c84a06 +SIZE (phylip-3.696.tar.gz) = 3955721 Modified: head/biology/phylip/pkg-descr ============================================================================== --- head/biology/phylip/pkg-descr Sun Nov 2 13:59:24 2014 (r372069) +++ head/biology/phylip/pkg-descr Sun Nov 2 14:13:59 2014 (r372070) @@ -1,17 +1,8 @@ - PHYLIP - Phylogeny Inference Package (version 3.6) - PHYLIP (the PHYLogeny Inference Package) is a package of programs for -inferring phylogenies (evolutionary trees). Methods that are -available in the package include parsimony, distance matrix, and -likelihood methods, including bootstrapping and consensus trees. Data -types that can be handled include molecular sequences, gene -frequencies, restriction sites, distance matrices, and 0/1 discrete -characters. - - Joe Felsenstein - Department of Genetics - University of Washington - Box 357360 - Seattle, Washington 98195-7360, U.S.A. +inferring phylogenies (evolutionary trees). Methods that are available +in the package include parsimony, distance matrix, and likelihood +methods, including bootstrapping and consensus trees. Data types that +can be handled include molecular sequences, gene frequencies, +restriction sites, distance matrices, and 0/1 discrete characters. WWW: http://evolution.genetics.washington.edu/phylip.html