Date: Thu, 31 Aug 2017 13:25:32 GMT From: pkg-fallout@FreeBSD.org To: pkg-fallout@FreeBSD.org Subject: [package - head-armv6-default][science/py-mlpy] Failed for py27-mlpy-3.5.0_4 in configure Message-ID: <201708311325.v7VDPWFB042162@beefy8.nyi.freebsd.org>
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You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: wen@FreeBSD.org Last committer: tcberner@FreeBSD.org Ident: $FreeBSD: head/science/py-mlpy/Makefile 444988 2017-07-03 20:38:11Z tcberner $ Log URL: http://beefy8.nyi.freebsd.org/data/head-armv6-default/p448889_s322995/logs/py27-mlpy-3.5.0_4.log Build URL: http://beefy8.nyi.freebsd.org/build.html?mastername=head-armv6-default&build=p448889_s322995 Log: ====>> Building science/py-mlpy build started at Thu Aug 31 13:24:24 UTC 2017 port directory: /usr/ports/science/py-mlpy building for: FreeBSD head-armv6-default-job-11 12.0-CURRENT FreeBSD 12.0-CURRENT 1200043 arm maintained by: wen@FreeBSD.org Makefile ident: $FreeBSD: head/science/py-mlpy/Makefile 444988 2017-07-03 20:38:11Z tcberner $ Poudriere version: 3.1.19-62-gd8fb0333 Host OSVERSION: 1200040 Jail OSVERSION: 1200043 Job Id: 11 !!! Jail is newer than host. (Jail: 1200043, Host: 1200040) !!! !!! This is not supported. !!! !!! Host kernel must be same or newer than jail. !!! !!! Expect build failures. !!! ---Begin Environment--- SHELL=/bin/csh UNAME_p=armv6 UNAME_m=arm ABI_FILE=/usr/lib/crt1.o OSVERSION=1200043 UNAME_v=FreeBSD 12.0-CURRENT 1200043 UNAME_r=12.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root STATUS=1 SAVED_TERM= MASTERMNT=/usr/local/poudriere/data/.m/head-armv6-default/ref QEMU_EMULATING=1 PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/local/sbin:/usr/local/bin:/root/bin POUDRIERE_BUILD_TYPE=bulk PKGNAME=py27-mlpy-3.5.0_4 OLDPWD=/ PWD=/usr/local/poudriere/data/.m/head-armv6-default/ref/.p/pool MASTERNAME=head-armv6-default SCRIPTPREFIX=/usr/local/share/poudriere USER=root HOME=/root POUDRIERE_VERSION=3.1.19-62-gd8fb0333 SCRIPTPATH=/usr/local/share/poudriere/bulk.sh LIBEXECPREFIX=/usr/local/libexec/poudriere LOCALBASE=/usr/local POUDRIEREPATH=/usr/local/bin/poudriere ---End Environment--- ---Begin Poudriere Port Flags/Env--- PORT_FLAGS= PKGENV= ---End Poudriere Port Flags/Env--- ---Begin OPTIONS List--- ---End OPTIONS List--- --CONFIGURE_ARGS-- --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- PYTHON="/usr/local/bin/python2.7" XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mlpy/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mlpy/work HOME=/wrkdirs/usr/ports/science/py-mlpy/work TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh --End CONFIGURE_ENV-- --MAKE_ENV-- XDG_DATA_HOME=/wrkdirs/usr/ports/science/py-mlpy/work XDG_CONFIG_HOME=/wrkdirs/usr/ports/science/py-mlpy/work HOME=/wrkdirs/usr/ports/science/py-mlpy/work TMPDIR="/tmp" NO_PIE=yes MK_DEBUG_FILES=no MK_KERNEL_SYMBOLS=no SHELL=/bin/sh NO_LINT=YES LDSHARED="/nxb-bin/usr/bin/cc -shared" PYTHONDONTWRITEBYTECODE= PYTHONOPTIMIZE= PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="/nxb-bin/usr/bin/cc" CFLAGS="-O2 -pipe -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core -fno-strict-aliasing" CPP="/nxb-bin/usr/bin/cpp" CPPFLAGS="" LDFLAGS=" -L/usr/local/lib" LIBS="" CXX="/nxb-bin/usr/bin/c++" CXXFLAGS="-O2 -pipe -I/usr/local/include -I/usr/local/lib/python2.7/site-packages/numpy/core -fno-strict-aliasing " MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -m 555" BSD_INSTALL_LIB="install -s -m 0644" BSD_INSTALL_SCRIPT="install -m 555" BSD_INSTALL_DATA="install -m 0644" BSD_INSTALL_MAN="install -m 444" --End MAKE_ENV-- --PLIST_SUB-- PYTHON_INCLUDEDIR=include/python2.7 PYTHON_LIBDIR=lib/python2.7 PYTHON_PLATFORM=freebsd12 PYTHON_PYOEXTENSION=pyo PYTHON_SITELIBDIR=lib/python2.7/site-packages PYTHON_SUFFIX=27 PYTHON_VER=2.7 PYTHON_VERSION=python2.7 PYTHON2="" PYTHON3="@comment " OSREL=12.0 PREFIX=%D LOCALBASE=/usr/local RESETPREFIX=/usr/local PORTDOCS="" PORTEXAMPLES="" LIB32DIR=lib DOCSDIR="share/doc/mlpy" EXAMPLESDIR="share/examples/mlpy" DATADIR="share/mlpy" WWWDIR="www/mlpy" ETCDIR="etc/mlpy" --End PLIST_SUB-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/mlpy DOCSDIR=/usr/local/share/doc/mlpy EXAMPLESDIR=/usr/local/share/examples/mlpy WWWDIR=/usr/local/www/mlpy ETCDIR=/usr/local/etc/mlpy --End SUB_LIST-- ---Begin make.conf--- .sinclude "/etc/make.nxb.conf" USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles PACKAGE_BUILDING=yes MACHINE=arm MACHINE_ARCH=armv6 ARCH=${MACHINE_ARCH} #### /usr/local/etc/poudriere.d/make.conf #### # XXX: We really need this but cannot use it while 'make checksum' does not # try the next mirror on checksum failure. It currently retries the same # failed mirror and then fails rather then trying another. It *does* # try the next if the size is mismatched though. #MASTER_SITE_FREEBSD=yes # Build ALLOW_MAKE_JOBS_PACKAGES with 2 jobs MAKE_JOBS_NUMBER=2 #### /usr/ports/Mk/Scripts/ports_env.sh #### ARCH=armv6 CONFIGURE_MAX_CMD_LEN=262144 OPSYS=FreeBSD OSREL=12.0 OSVERSION=1200043 PYTHONBASE=/usr/local UID=0 _JAVA_OS_LIST_REGEXP=native|linux _JAVA_VENDOR_LIST_REGEXP=openjdk|oracle|sun _JAVA_VERSION_LIST_REGEXP=1.6|1.7|1.8|1.6\+|1.7\+|1.8\+ _OSRELEASE=12.0-CURRENT #### Misc Poudriere #### GID=0 DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ---Begin make.nxb.conf--- CC=/nxb-bin/usr/bin/cc CPP=/nxb-bin/usr/bin/cpp CXX=/nxb-bin/usr/bin/c++ AS=/nxb-bin/usr/bin/as NM=/nxb-bin/usr/bin/nm LD=/nxb-bin/usr/bin/ld OBJCOPY=/nxb-bin/usr/bin/objcopy SIZE=/nxb-bin/usr/bin/size STRIPBIN=/nxb-bin/usr/bin/strip SED=/nxb-bin/usr/bin/sed READELF=/nxb-bin/usr/bin/readelf RANLIB=/nxb-bin/usr/bin/ranlib YACC=/nxb-bin/usr/bin/yacc MAKE=/nxb-bin/usr/bin/make STRINGS=/nxb-bin/usr/bin/strings AWK=/nxb-bin/usr/bin/awk FLEX=/nxb-bin/usr/bin/flex ---End make.nxb.conf--- --Resource limits-- cpu time (seconds, -t) unlimited file size (512-blocks, -f) unlimited data seg size (kbytes, -d) 33554432 stack size (kbytes, -s) 524288 core file size (512-blocks, -c) unlimited max memory size (kbytes, -m) unlimited locked memory (kbytes, -l) unlimited max user processes (-u) 89999 open files (-n) 1024 virtual mem size (kbytes, -v) unlimited swap limit (kbytes, -w) unlimited socket buffer size (bytes, -b) unlimited pseudo-terminals (-p) unlimited kqueues (-k) unlimited umtx shared locks (-o) unlimited --End resource limits-- =======================<phase: check-sanity >============================ ===> License GPLv3 accepted by the user =========================================================================== =======================<phase: pkg-depends >============================ ===> py27-mlpy-3.5.0_4 depends on file: /usr/local/sbin/pkg - not found ===> Installing existing package /packages/All/pkg-1.10.1.txz [head-armv6-default-job-11] Installing pkg-1.10.1... [head-armv6-default-job-11] Extracting pkg-1.10.1: .......... done ===> py27-mlpy-3.5.0_4 depends on file: /usr/local/sbin/pkg - found ===> Returning to build of py27-mlpy-3.5.0_4 =========================================================================== =======================<phase: fetch-depends >============================ =========================================================================== =======================<phase: fetch >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_4 for building =========================================================================== =======================<phase: checksum >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_4 for building => SHA256 Checksum OK for mlpy-3.5.0.tar.gz. =========================================================================== =======================<phase: extract-depends>============================ =========================================================================== =======================<phase: extract >============================ ===> License GPLv3 accepted by the user ===> Fetching all distfiles required by py27-mlpy-3.5.0_4 for building ===> Extracting for py27-mlpy-3.5.0_4 => SHA256 Checksum OK for mlpy-3.5.0.tar.gz. =========================================================================== =======================<phase: patch-depends >============================ =========================================================================== =======================<phase: patch >============================ ===> Patching for py27-mlpy-3.5.0_4 =========================================================================== =======================<phase: build-depends >============================ ===> py27-mlpy-3.5.0_4 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - not found ===> Installing existing package /packages/All/py27-numpy-1.13.1_1,1.txz [head-armv6-default-job-11] Installing py27-numpy-1.13.1_1,1... [head-armv6-default-job-11] `-- Installing blas-3.5.0_3... [head-armv6-default-job-11] | `-- Installing gcc5-5.4.0_3... [head-armv6-default-job-11] | | `-- Installing binutils-2.28,1... [head-armv6-default-job-11] | | `-- Installing gettext-runtime-0.19.8.1_1... [head-armv6-default-job-11] | | | `-- Installing indexinfo-0.2.6... [head-armv6-default-job-11] | | | `-- Extracting indexinfo-0.2.6: .... done [head-armv6-default-job-11] | | `-- Extracting gettext-runtime-0.19.8.1_1: .......... done [head-armv6-default-job-11] | | `-- Extracting binutils-2.28,1: .......... done [head-armv6-default-job-11] | | `-- Installing gmp-6.1.2... [head-armv6-default-job-11] | | `-- Extracting gmp-6.1.2: .......... done [head-armv6-default-job-11] | | `-- Installing mpc-1.0.3... [head-armv6-default-job-11] | | `-- Installing mpfr-3.1.5_1... [head-armv6-default-job-11] | | `-- Extracting mpfr-3.1.5_1: .......... done [head-armv6-default-job-11] | | `-- Extracting mpc-1.0.3: ...... done [head-armv6-default-job-11] | `-- Extracting gcc5-5.4.0_3: .......... done [head-armv6-default-job-11] `-- Extracting blas-3.5.0_3: ....... done [head-armv6-default-job-11] `-- Installing cblas-1.0_6... [head-armv6-default-job-11] `-- Extracting cblas-1.0_6: ......... done [head-armv6-default-job-11] `-- Installing lapack-3.5.0_2... [head-armv6-default-job-11] `-- Extracting lapack-3.5.0_2: .......... done [head-armv6-default-job-11] `-- Installing py27-setuptools-36.2.2... [head-armv6-default-job-11] | `-- Installing python27-2.7.13_7... [head-armv6-default-job-11] | | `-- Installing libffi-3.2.1_1... [head-armv6-default-job-11] | | `-- Extracting libffi-3.2.1_1: .......... done [head-armv6-default-job-11] | | `-- Installing readline-7.0.3... [head-armv6-default-job-11] | | `-- Extracting readline-7.0.3: .......... done [head-armv6-default-job-11] | `-- Extracting python27-2.7.13_7: .......... done [head-armv6-default-job-11] `-- Extracting py27-setuptools-36.2.2: .......... done [head-armv6-default-job-11] `-- Installing suitesparse-4.0.2_6... [head-armv6-default-job-11] | `-- Installing openblas-0.2.20,1... [head-armv6-default-job-11] | `-- Extracting openblas-0.2.20,1: ......... done [head-armv6-default-job-11] `-- Extracting suitesparse-4.0.2_6: .......... done [head-armv6-default-job-11] Extracting py27-numpy-1.13.1_1,1: .......... done Message from gcc5-5.4.0_3: To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc5 For ports leveraging USE_GCC, USES=compiler, or USES=fortran this happens transparently. Message from cblas-1.0_6: ===> NOTICE: The cblas port currently does not have a maintainer. As a result, it is more likely to have unresolved issues, not be up-to-date, or even be removed in the future. To volunteer to maintain this port, please create an issue at: https://bugs.freebsd.org/bugzilla More information about port maintainership is available at: https://www.freebsd.org/doc/en/articles/contributing/ports-contributing.html#maintain-port Message from python27-2.7.13_7: =========================================================================== Note that some standard Python modules are provided as separate ports as they require additional dependencies. They are available as: bsddb databases/py-bsddb gdbm databases/py-gdbm sqlite3 databases/py-sqlite3 tkinter x11-toolkits/py-tkinter =========================================================================== ===> py27-mlpy-3.5.0_4 depends on file: /usr/local/lib/python2.7/site-packages/numpy/core/numeric.py - found ===> Returning to build of py27-mlpy-3.5.0_4 ===> py27-mlpy-3.5.0_4 depends on package: cython>0 - not found ===> Installing existing package /packages/All/cython-0.26.txz [head-armv6-default-job-11] Installing cython-0.26... [head-armv6-default-job-11] Extracting cython-0.26: .......... done ===> py27-mlpy-3.5.0_4 depends on package: cython>0 - found ===> Returning to build of py27-mlpy-3.5.0_4 ===> py27-mlpy-3.5.0_4 depends on package: py27-setuptools>0 - found ===> py27-mlpy-3.5.0_4 depends on file: /usr/local/bin/python2.7 - found =========================================================================== =======================<phase: lib-depends >============================ ===> py27-mlpy-3.5.0_4 depends on shared library: libgsl.so - not found ===> Installing existing package /packages/All/gsl-2.4.txz [head-armv6-default-job-11] Installing gsl-2.4... [head-armv6-default-job-11] Extracting gsl-2.4: .......... done ===> py27-mlpy-3.5.0_4 depends on shared library: libgsl.so - found (/usr/local/lib/libgsl.so) ===> Returning to build of py27-mlpy-3.5.0_4 =========================================================================== =======================<phase: configure >============================ ===> Configuring for py27-mlpy-3.5.0_4 Traceback (most recent call last): File "<string>", line 1, in <module> File "setup.py", line 6, in <module> import numpy File "/usr/local/lib/python2.7/site-packages/numpy/__init__.py", line 142, in <module> from . import add_newdocs File "/usr/local/lib/python2.7/site-packages/numpy/add_newdocs.py", line 13, in <module> from numpy.lib import add_newdoc File "/usr/local/lib/python2.7/site-packages/numpy/lib/__init__.py", line 8, in <module> from .type_check import * File "/usr/local/lib/python2.7/site-packages/numpy/lib/type_check.py", line 11, in <module> import numpy.core.numeric as _nx File "/usr/local/lib/python2.7/site-packages/numpy/core/__init__.py", line 26, in <module> raise ImportError(msg) ImportError: Importing the multiarray numpy extension module failed. Most likely you are trying to import a failed build of numpy. If you're working with a numpy git repo, try `git clean -xdf` (removes all files not under version control). Otherwise reinstall numpy. Original error was: /usr/local/lib/libblas.so.2: Undefined symbol "__aeabi_uidiv@GCC_3.5" *** Error code 1 Stop. make: stopped in /usr/ports/science/py-mlpy
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