From owner-svn-ports-head@freebsd.org Mon Dec 17 19:12:40 2018 Return-Path: Delivered-To: svn-ports-head@mailman.ysv.freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2610:1c1:1:606c::19:1]) by mailman.ysv.freebsd.org (Postfix) with ESMTP id 17B3B1349C5E; Mon, 17 Dec 2018 19:12:40 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from mxrelay.nyi.freebsd.org (mxrelay.nyi.freebsd.org [IPv6:2610:1c1:1:606c::19:3]) (using TLSv1.3 with cipher TLS_AES_256_GCM_SHA384 (256/256 bits) server-signature RSA-PSS (4096 bits) client-signature RSA-PSS (4096 bits) client-digest SHA256) (Client CN "mxrelay.nyi.freebsd.org", Issuer "Let's Encrypt Authority X3" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id B1BC785D08; Mon, 17 Dec 2018 19:12:39 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org (repo.freebsd.org [IPv6:2610:1c1:1:6068::e6a:0]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (Client did not present a certificate) by mxrelay.nyi.freebsd.org (Postfix) with ESMTPS id 87D021B587; Mon, 17 Dec 2018 19:12:39 +0000 (UTC) (envelope-from jrm@FreeBSD.org) Received: from repo.freebsd.org ([127.0.1.37]) by repo.freebsd.org (8.15.2/8.15.2) with ESMTP id wBHJCdrC048805; Mon, 17 Dec 2018 19:12:39 GMT (envelope-from jrm@FreeBSD.org) Received: (from jrm@localhost) by repo.freebsd.org (8.15.2/8.15.2/Submit) id wBHJCcaB048802; Mon, 17 Dec 2018 19:12:38 GMT (envelope-from jrm@FreeBSD.org) Message-Id: <201812171912.wBHJCcaB048802@repo.freebsd.org> X-Authentication-Warning: repo.freebsd.org: jrm set sender to jrm@FreeBSD.org using -f From: Joseph Mingrone Date: Mon, 17 Dec 2018 19:12:38 +0000 (UTC) To: ports-committers@freebsd.org, svn-ports-all@freebsd.org, svn-ports-head@freebsd.org Subject: svn commit: r487707 - in head/biology/diamond: . files X-SVN-Group: ports-head X-SVN-Commit-Author: jrm X-SVN-Commit-Paths: in head/biology/diamond: . files X-SVN-Commit-Revision: 487707 X-SVN-Commit-Repository: ports MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit X-Rspamd-Queue-Id: B1BC785D08 X-Spamd-Bar: -- Authentication-Results: mx1.freebsd.org X-Spamd-Result: default: False [-2.98 / 15.00]; local_wl_from(0.00)[FreeBSD.org]; NEURAL_HAM_MEDIUM(-1.00)[-0.997,0]; NEURAL_HAM_SHORT(-0.98)[-0.983,0]; NEURAL_HAM_LONG(-1.00)[-0.997,0] X-BeenThere: svn-ports-head@freebsd.org X-Mailman-Version: 2.1.29 Precedence: list List-Id: SVN commit messages for the ports tree for head List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Mon, 17 Dec 2018 19:12:40 -0000 Author: jrm Date: Mon Dec 17 19:12:38 2018 New Revision: 487707 URL: https://svnweb.freebsd.org/changeset/ports/487707 Log: biology/diamond: Update to 0.9.23 plus fixes after release Also: - update license since upstream changed to GPLv3 - only build/package for amd64, since it is untested on other architectures and currently does not build on i386 Upstream changes: https://github.com/bbuchfink/diamond/releases/tag/v0.9.23 Modified: head/biology/diamond/Makefile (contents, props changed) head/biology/diamond/distinfo (contents, props changed) head/biology/diamond/files/patch-CMakeLists.txt (contents, props changed) Modified: head/biology/diamond/Makefile ============================================================================== --- head/biology/diamond/Makefile Mon Dec 17 19:12:05 2018 (r487706) +++ head/biology/diamond/Makefile Mon Dec 17 19:12:38 2018 (r487707) @@ -2,16 +2,17 @@ PORTNAME= diamond DISTVERSIONPREFIX= v -DISTVERSION= 0.9.22 +DISTVERSION= 0.9.23-6 +DISTVERSIONSUFFIX= -gfecab3e CATEGORIES= biology MAINTAINER= jrm@FreeBSD.org COMMENT= BLAST-compatible local sequence aligner -LICENSE= AGPLv3 +LICENSE= GPLv3 LICENSE_FILE= ${WRKSRC}/LICENSE -ONLY_FOR_ARCHS= amd64 i386 +ONLY_FOR_ARCHS= amd64 USES= cmake:outsource USE_GITHUB= yes Modified: head/biology/diamond/distinfo ============================================================================== --- head/biology/diamond/distinfo Mon Dec 17 19:12:05 2018 (r487706) +++ head/biology/diamond/distinfo Mon Dec 17 19:12:38 2018 (r487707) @@ -1,3 +1,3 @@ -TIMESTAMP = 1526318003 -SHA256 (bbuchfink-diamond-v0.9.22_GH0.tar.gz) = 35e518cfa0ac2fbc57e422d380bdb5123c6335742dd7965b76c34c95f241b729 -SIZE (bbuchfink-diamond-v0.9.22_GH0.tar.gz) = 412996 +TIMESTAMP = 1544706267 +SHA256 (bbuchfink-diamond-v0.9.23-6-gfecab3e_GH0.tar.gz) = 1d7c48b4da45854d75c9f90809a050fead6ffa8ad0b67447df7146e6849d5319 +SIZE (bbuchfink-diamond-v0.9.23-6-gfecab3e_GH0.tar.gz) = 424626 Modified: head/biology/diamond/files/patch-CMakeLists.txt ============================================================================== --- head/biology/diamond/files/patch-CMakeLists.txt Mon Dec 17 19:12:05 2018 (r487706) +++ head/biology/diamond/files/patch-CMakeLists.txt Mon Dec 17 19:12:38 2018 (r487707) @@ -1,8 +1,8 @@ ---- CMakeLists.txt.orig 2017-11-03 03:31:11 UTC +--- CMakeLists.txt.orig 2018-12-07 02:22:51 UTC +++ CMakeLists.txt -@@ -9,16 +9,6 @@ if(BUILD_STATIC) - set(CMAKE_EXE_LINKER_FLAGS "-static") - endif() +@@ -12,16 +12,6 @@ endif() + + set(CMAKE_CXX_STANDARD 11) -if(CMAKE_BUILD_MARCH) - set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -march=${CMAKE_BUILD_MARCH}")