From owner-freebsd-pkg-fallout@FreeBSD.ORG Fri Oct 18 12:01:58 2013 Return-Path: Delivered-To: pkg-fallout@FreeBSD.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTP id 15322C79 for ; Fri, 18 Oct 2013 12:01:58 +0000 (UTC) (envelope-from pkg-fallout@FreeBSD.org) Received: from beefy1.isc.freebsd.org (beefy1.isc.freebsd.org [IPv6:2001:4f8:3:ffe0:4072:0:16:38]) (using TLSv1.2 with cipher ECDHE-RSA-AES256-GCM-SHA384 (256/256 bits)) (No client certificate requested) by mx1.freebsd.org (Postfix) with ESMTPS id C08532A9C for ; Fri, 18 Oct 2013 12:01:57 +0000 (UTC) Received: from beefy1.isc.freebsd.org (localhost [127.0.0.1]) by beefy1.isc.freebsd.org (8.14.7/8.14.7) with ESMTP id r9IC1v9N027670 for ; Fri, 18 Oct 2013 12:01:57 GMT (envelope-from pkg-fallout@FreeBSD.org) Received: (from root@localhost) by beefy1.isc.freebsd.org (8.14.7/8.14.7/Submit) id r9IC1vRi027625; Fri, 18 Oct 2013 12:01:57 GMT (envelope-from pkg-fallout@FreeBSD.org) Date: Fri, 18 Oct 2013 12:01:57 GMT From: pkg-fallout@FreeBSD.org Message-Id: <201310181201.r9IC1vRi027625@beefy1.isc.freebsd.org> To: pkg-fallout@FreeBSD.org Subject: [REL - head-i386-default][biology/lamarc] Failed for lamarc-2.1.8, 1 in build X-BeenThere: freebsd-pkg-fallout@freebsd.org X-Mailman-Version: 2.1.14 Precedence: list List-Id: Fallout logs from package building List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 18 Oct 2013 12:01:58 -0000 You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: ports@FreeBSD.org Last committer: bdrewery@FreeBSD.org Ident: $FreeBSD: head/biology/lamarc/Makefile 328226 2013-09-25 00:54:08Z bdrewery $ Log URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-17_19h54m49s/logs/lamarc-2.1.8,1.log Build URL: http://beefy1.isc.freebsd.org/bulk/head-i386-default/2013-10-17_19h54m49s Log: ====>> Building biology/lamarc build started at Fri Oct 18 12:01:32 UTC 2013 port directory: /usr/ports/biology/lamarc building for: FreeBSD head-i386-default-job-08 11.0-CURRENT FreeBSD 11.0-CURRENT r256430 i386 maintained by: ports@FreeBSD.org Makefile ident: $FreeBSD: head/biology/lamarc/Makefile 328226 2013-09-25 00:54:08Z bdrewery $ Poudriere version: 3.1-pre ---Begin Environment--- UNAME_m=i386 UNAME_p=i386 OSVERSION=1100000 UNAME_v=FreeBSD 11.0-CURRENT r256430 UNAME_r=11.0-CURRENT BLOCKSIZE=K MAIL=/var/mail/root PATH=/sbin:/bin:/usr/sbin:/usr/bin:/usr/games:/usr/local/sbin:/usr/local/bin:/root/bin STATUS=1 MASTERMNT=/usr/local/poudriere/data/build/head-i386-default/ref PKG_EXT=txz tpid=95052 POUDRIERE_BUILD_TYPE=bulk PKGNG=1 PKGNAME=lamarc-2.1.8,1 PKG_DELETE=/usr/local/sbin/pkg-static delete -y -f PKG_ADD=/usr/local/sbin/pkg-static add PWD=/root MASTERNAME=head-i386-default USER=root HOME=/root POUDRIERE_VERSION=3.1-pre LOCALBASE=/usr/local PACKAGE_BUILDING=yes PKG_VERSION=/poudriere/pkg-static version PKG_BIN=/usr/local/sbin/pkg-static ---End Environment--- ---Begin OPTIONS List--- ===> The following configuration options are available for lamarc-2.1.8,1: DOCS=on: Build and/or install documentation WXGTK=off: wxGTK GUI toolkit support ===> Use 'make config' to modify these settings ---End OPTIONS List--- --CONFIGURE_ARGS-- --disable-converter --prefix=/usr/local ${_LATE_CONFIGURE_ARGS} --End CONFIGURE_ARGS-- --CONFIGURE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh CONFIG_SHELL=/bin/sh CONFIG_SITE=/usr/ports/Templates/config.site lt_cv_sys_max_cmd_len=262144 --End CONFIGURE_ENV-- --MAKE_ENV-- TMPDIR="/tmp" TMPDIR="/tmp" SHELL=/bin/sh NO_LINT=YES PREFIX=/usr/local LOCALBASE=/usr/local LIBDIR="/usr/lib" CC="cc" CFLAGS="-O2 -pipe -fno-strict-aliasing" CPP="cpp" CPPFLAGS="" LDFLAGS="" CXX="c++" CXXFLAGS="-O2 -pipe -fno-strict-aliasing" MANPREFIX="/usr/local" BSD_INSTALL_PROGRAM="install -s -o root -g wheel -m 555" BSD_INSTALL_LIB="install -s -o root -g wheel -m 444" BSD_INSTALL_SCRIPT="install -o root -g wheel -m 555" BSD_INSTALL_DATA="install -o root -g wheel -m 444" BSD_INSTALL_MAN="install -o root -g wheel -m 444" --End MAKE_ENV-- --SUB_LIST-- PREFIX=/usr/local LOCALBASE=/usr/local DATADIR=/usr/local/share/lamarc DOCSDIR=/usr/local/share/doc/lamarc EXAMPLESDIR=/usr/local/share/examples/lamarc WWWDIR=/usr/local/www/lamarc ETCDIR=/usr/local/etc/lamarc --End SUB_LIST-- ---Begin make.conf--- ARCH=i386 MACHINE=i386 MACHINE_ARCH=i386 USE_PACKAGE_DEPENDS=yes BATCH=yes WRKDIRPREFIX=/wrkdirs PORTSDIR=/usr/ports PACKAGES=/packages DISTDIR=/distfiles #### /usr/local/etc/poudriere.d/make.conf #### WITH_PKGNG=yes NO_RESTRICTED=yes DISABLE_MAKE_JOBS=poudriere ---End make.conf--- ===> Cleaning for lamarc-2.1.8,1 =================================================== =========================================================================== =================================================== ===> lamarc-2.1.8,1 depends on file: /usr/local/sbin/pkg - not found ===> Verifying install for /usr/local/sbin/pkg in /usr/ports/ports-mgmt/pkg ===> Installing existing package /packages/All/pkg-1.1.4_8.txz Installing pkg-1.1.4_8... done If you are upgrading from the old package format, first run: # pkg2ng ===> Returning to build of lamarc-2.1.8,1 =========================================================================== =================================================== =========================================================================== =================================================== ===> License AL2 accepted by the user ===> Fetching all distfiles required by lamarc-2.1.8,1 for building =========================================================================== =================================================== ===> License AL2 accepted by the user ===> Fetching all distfiles required by lamarc-2.1.8,1 for building => SHA256 Checksum OK for lamarc-2.1.8-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> License AL2 accepted by the user ===> Fetching all distfiles required by lamarc-2.1.8,1 for building ===> Extracting for lamarc-2.1.8,1 => SHA256 Checksum OK for lamarc-2.1.8-src.tar.gz. =========================================================================== =================================================== =========================================================================== =================================================== ===> Patching for lamarc-2.1.8,1 ===> Applying FreeBSD patches for lamarc-2.1.8,1 =========================================================================== =================================================== =========================================================================== =================================================== =========================================================================== =================================================== ===> Configuring for lamarc-2.1.8,1 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8/aclocal.m4 ===> FreeBSD 10 autotools fix applied to /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8/configure configure: loading site script /usr/ports/Templates/config.site checking whether to enable maintainer-specific portions of Makefiles... no checking build system type... i386-portbld-freebsd11.0 checking host system type... i386-portbld-freebsd11.0 checking target system type... i386-portbld-freebsd11.0 checking for a BSD-compatible install... /usr/bin/install -c -o root -g wheel checking whether build environment is sane... yes checking for a thread-safe mkdir -p... (cached) /bin/mkdir -p checking for gawk... (cached) /usr/bin/awk checking whether make sets $(MAKE)... yes checking for C++ compiler default output file name... a.out checking whether the C++ compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether c++ accepts -g... yes checking for style of include used by make... GNU checking dependency style of c++... gcc3 checking for ranlib... ranlib checking for gcc... cc checking whether we are using the GNU C compiler... yes checking whether cc accepts -g... yes checking for cc option to accept ISO C89... none needed checking dependency style of cc... gcc3 checking how to run the C preprocessor... cpp checking for grep that handles long lines and -e... (cached) /usr/bin/grep checking for egrep... (cached) /usr/bin/egrep checking for ANSI C header files... (cached) yes checking for sys/types.h... (cached) yes checking for sys/stat.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for memory.h... (cached) yes checking for strings.h... (cached) yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for float.h... (cached) yes checking for limits.h... (cached) yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdbool.h that conforms to C99... (cached) yes checking for _Bool... (cached) yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for size_t... (cached) yes checking whether struct tm is in sys/time.h or time.h... time.h checking for error_at_line... no checking for working memcmp... yes checking for strftime... (cached) yes checking for getcwd... (cached) yes checking for pow... no checking for sqrt... no checking for strchr... yes checking for strpbrk... (cached) yes configure: creating ./config.status config.status: creating Makefile config.status: creating config/conf.h config.status: executing depfiles commands ************************************************************* Settings for lamarc build. For information on how to change try executing "configure --help" and reading the lamarc documentation section entitled "Compiling Lamarc". ************************************************************* Options that are almost always on: Compile lam_conv, the lamarc data converter? no Compile lam_conv as a GUI? -- Compile LAMARC to read data? yes Compile LAMARC to display progress bar? yes In file included from ./boost/random/uniform_int.hpp:26: ./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter] InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl) ^ In file included from src/bayeslike/bayesanalyzer_1d.cpp:26: In file included from ./src/force/force.h:16: In file included from ./src/postlike/plforces.h:29: ./src/tree/summary.h:33:1: warning: class 'Interval' was previously declared as a struct [-Wmismatched-tags] class Interval; ^ ./src/tree/intervaldata.h:55:8: note: previous use is here struct Interval ^ ./src/tree/summary.h:33:1: note: did you mean struct here? class Interval; ^~~~~ struct ./src/tree/summary.h:195:52: warning: unused parameter 'totals' [-Wunused-parameter] virtual void AdjustSummary(const DoubleVec1d & totals, long region) {}; ^ ./src/tree/summary.h:195:65: warning: unused parameter 'region' [-Wunused-parameter] virtual void AdjustSummary(const DoubleVec1d & totals, long region) {}; ^ In file included from src/bayeslike/bayesanalyzer_1d.cpp:26: In file included from ./src/force/force.h:16: ./src/postlike/plforces.h:401:45: warning: unused parameter 'param' [-Wunused-parameter] double DlnWait (const vector < double >¶m, ^ ./src/postlike/plforces.h:402:41: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata, ^ ./src/postlike/plforces.h:403:33: warning: unused parameter 'whichparam' [-Wunused-parameter] const long &whichparam) { assert(false); return 0;}; ^ ./src/postlike/plforces.h:405:46: warning: unused parameter 'param' [-Wunused-parameter] double DlnPoint (const vector < double >¶m, ^ ./src/postlike/plforces.h:406:42: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata, ^ ./src/postlike/plforces.h:407:34: warning: unused parameter 'whichparam' [-Wunused-parameter] const long &whichparam) { assert(false); return 0;}; ^ ./src/postlike/plforces.h:468:44: warning: unused parameter 'param' [-Wunused-parameter] double lnWait (const vector < double >¶m, ^ ./src/postlike/plforces.h:469:40: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata) { return 1.0; }; ^ ./src/postlike/plforces.h:471:45: warning: unused parameter 'param' [-Wunused-parameter] double lnPoint (const vector < double >¶m, ^ ./src/postlike/plforces.h:472:45: warning: unused parameter 'lparam' [-Wunused-parameter] const vector < double >&lparam, ^ ./src/postlike/plforces.h:473:41: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata) { return 1.0; }; ^ ./src/postlike/plforces.h:475:45: warning: unused parameter 'param' [-Wunused-parameter] double DlnWait (const vector < double >¶m, ^ ./src/postlike/plforces.h:476:41: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata, ^ ./src/postlike/plforces.h:477:33: warning: unused parameter 'whichparam' [-Wunused-parameter] const long &whichparam) { return 1.0; }; ^ ./src/postlike/plforces.h:479:46: warning: unused parameter 'param' [-Wunused-parameter] double DlnPoint (const vector < double >¶m, ^ ./src/postlike/plforces.h:480:42: warning: unused parameter 'treedata' [-Wunused-parameter] const TreeSummary * treedata, ^ ./src/postlike/plforces.h:481:34: warning: unused parameter 'whichparam' [-Wunused-parameter] const long &whichparam) { return 1.0; }; ^ In file included from src/bayeslike/bayesanalyzer_1d.cpp:26: ./src/force/force.h:256:61: warning: unused parameter 'fs' [-Wunused-parameter] virtual void ModifyEvents(const ForceSummary& fs, ^ ./src/force/force.h:549:61: warning: unused parameter 'mystatus' [-Wunused-parameter] virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); }; ^ ./src/force/force.h:583:61: warning: unused parameter 'mystatus' [-Wunused-parameter] virtual std::string MakeStatusXML(const std::string& mystatus) const { return string(""); }; ^ 72 warnings generated. mv -f .deps/lamarc-bayesanalyzer_1d.Tpo .deps/lamarc-bayesanalyzer_1d.Po c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fno-strict-aliasing -MT lamarc-bayescurve.o -MD -MP -MF .deps/lamarc-bayescurve.Tpo -c -o lamarc-bayescurve.o `test -f 'src/bayeslike/bayescurve.cpp' || echo './'`src/bayeslike/bayescurve.cpp In file included from src/bayeslike/bayescurve.cpp:31: In file included from ./src/control/registry.h:22: In file included from ./src/tools/random.h:15: In file included from ./boost/random.hpp:42: In file included from ./boost/random/ranlux.hpp:21: ./boost/random/discard_block.hpp:68:38: warning: unused parameter 'x' [-Wunused-parameter] static bool validation(result_type x) { return true; } // dummy ^ In file included from src/bayeslike/bayescurve.cpp:31: In file included from ./src/control/registry.h:22: In file included from ./src/tools/random.h:15: In file included from ./boost/random.hpp:53: In file included from ./boost/random/random_number_generator.hpp:22: In file included from ./boost/random/uniform_int.hpp:26: ./boost/random/uniform_smallint.hpp:39:63: warning: unused parameter 'ud' [-Wunused-parameter] InputStream& extract_uniform_int(InputStream& is, UniformInt& ud, Impl& impl) ^ In file included from src/bayeslike/bayescurve.cpp:31: In file included from ./src/control/registry.h:24: In file included from ./src/control/regiongammainfo.h:16: ./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_identical); }; ^ ./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ 14 warnings generated. mv -f .deps/lamarc-bayescurve.Tpo .deps/lamarc-bayescurve.Po c++ -DHAVE_CONFIG_H -I. -I./config -DLAMARC_COMPILE_LINUX -DNDEBUG -Wall -Wextra -Wno-unused -I ./config -I ./config -I ./src/bayeslike -I ./src/control -I ./src/conversion -I ./src/convErr -I ./src/convModel -I ./src/convParse -I ./src/convStrings -I ./src/convUtil -I ./src/datalike -I ./src/force -I ./src/guiconv -I ./src/guiutil -I ./src/lamarcmenus -I ./src/menu -I ./src/postlike -I ./src/report -I ./src/tools -I ./src/tree -I ./src/ui_interface -I ./src/ui_util -I ./src/ui_vars -I ./src/xml -I ./boost -I ./resources -I ./tinyxml -DTIXML_USE_STL -O2 -pipe -fno-strict-aliasing -MT lamarc-bayesparamlike_1d.o -MD -MP -MF .deps/lamarc-bayesparamlike_1d.Tpo -c -o lamarc-bayesparamlike_1d.o `test -f 'src/bayeslike/bayesparamlike_1d.cpp' || echo './'`src/bayeslike/bayesparamlike_1d.cpp In file included from src/bayeslike/bayesparamlike_1d.cpp:18: ./src/control/defaults.h:286:18: error: unknown type name 'time_t' static const time_t programstarttime; ^ In file included from src/bayeslike/bayesparamlike_1d.cpp:20: In file included from ./src/tree/parameter.h:66: ./src/force/paramstat.h:99:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:100:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_identical); }; ^ ./src/force/paramstat.h:121:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:122:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:163:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:164:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:181:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:182:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:201:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:202:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ ./src/force/paramstat.h:219:59: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleIndividualStatus(force_type ftype) const { return ToString(pstat_unconstrained); }; ^ ./src/force/paramstat.h:220:54: warning: unused parameter 'ftype' [-Wunused-parameter] virtual std::string ToggleGroupStatus(force_type ftype) const { return ToString(pstat_constant); }; ^ 12 warnings and 1 error generated. *** Error code 1 Stop. make[1]: stopped in /wrkdirs/usr/ports/biology/lamarc/work/lamarc-2.1.8 *** Error code 1 Stop. make: stopped in /usr/ports/biology/lamarc ===> Cleaning for lamarc-2.1.8,1