From owner-freebsd-python@FreeBSD.ORG Fri May 9 03:33:30 2014 Return-Path: Delivered-To: python@freebsd.org Received: from mx1.freebsd.org (mx1.freebsd.org [IPv6:2001:1900:2254:206a::19:1]) (using TLSv1 with cipher ADH-AES256-SHA (256/256 bits)) (No client certificate requested) by hub.freebsd.org (Postfix) with ESMTPS id CF1E429D; Fri, 9 May 2014 03:33:30 +0000 (UTC) Received: from mail-ve0-x235.google.com (mail-ve0-x235.google.com [IPv6:2607:f8b0:400c:c01::235]) (using TLSv1 with cipher ECDHE-RSA-RC4-SHA (128/128 bits)) (Client CN "smtp.gmail.com", Issuer "Google Internet Authority G2" (verified OK)) by mx1.freebsd.org (Postfix) with ESMTPS id 7C1F3AA8; Fri, 9 May 2014 03:33:30 +0000 (UTC) Received: by mail-ve0-f181.google.com with SMTP id pa12so4480585veb.12 for ; Thu, 08 May 2014 20:33:29 -0700 (PDT) DKIM-Signature: v=1; a=rsa-sha256; c=relaxed/relaxed; d=gmail.com; s=20120113; h=mime-version:in-reply-to:references:date:message-id:subject:from:to :cc:content-type; bh=RKfYAFp7ayRkAnEqeyz450lpsXNopb7D+rnTfHtsUxw=; b=v9dww9G7AoB3gpbEHdEzreD7bJ+nhZfy+7/HtQ0eTfnS/N6jlYfUm5Z9Sx0J4lB26f DagfH3NCfuXiQsuE1E9zV2YootJ4cxrf8blJq6KkO/S9ObtPCKUS7gomvrPzjQrzppO1 QxJwrjYBD+Uf7RX95RUvVnlGB4Q8uVoVySnT8Dpy0yaWfA4Dt6dTA32PU2cggH0M3E1b ih94rUoCEgXFjTwdLUatJlfYlQtXnkaILk2pGWoBJYFhfeb4NgdJk4sx1sbv6upkmEH4 PBdZV/sOb7u11Z0ryoBDcInV98iKW4ML0n7Mq9SQ7vuD47IN3uGiTS7iODNyUNsl4TY8 mWAw== MIME-Version: 1.0 X-Received: by 10.58.116.175 with SMTP id jx15mr6156736veb.9.1399606409538; Thu, 08 May 2014 20:33:29 -0700 (PDT) Received: by 10.58.168.199 with HTTP; Thu, 8 May 2014 20:33:29 -0700 (PDT) In-Reply-To: <536C40B0.2060705@saltant.com> References: <536C40B0.2060705@saltant.com> Date: Fri, 9 May 2014 11:33:29 +0800 Message-ID: Subject: Re: py27-pandas-0.13.1_1 conflict with py27-MySQLdb-1.2.3_4/ py27-MySQLdb55-1.2.3_4 From: Irjohn Junus To: "John W. O'Brien" Content-Type: text/plain; charset=UTF-8 X-Content-Filtered-By: Mailman/MimeDel 2.1.18 Cc: python@freebsd.org, Jimmy Olgeni X-BeenThere: freebsd-python@freebsd.org X-Mailman-Version: 2.1.18 Precedence: list List-Id: FreeBSD-specific Python issues List-Unsubscribe: , List-Archive: List-Post: List-Help: List-Subscribe: , X-List-Received-Date: Fri, 09 May 2014 03:33:31 -0000 Hi John, No worries and yes I'm still having the problem. I remember seeing this message: ===>>> pkg-message for gcc-4.7.3_1 To ensure binaries built with this toolchain find appropriate versions of the necessary run-time libraries, you may want to link using -Wl,-rpath=/usr/local/lib/gcc47 after upgrading gcc port a few days ago, which is described in your link [0]. Do I issue this command as root? Need advice here, thanks. Regards, Irjohn On Fri, May 9, 2014 at 10:42 AM, John W. O'Brien wrote: > On 4/18/14 8:45 AM, Irjohn Junus wrote: > > Dear All, > > > > I'm running 9.1-RELEASE and today just after freebsd-update to p11 and > > updating ports to the latest found out that pandas won't import after > > MySQLdb is imported first. Strangely, it will import no problem if > > MySQLdb is imported after: > > Hi Irjohn, > > Sorry for the long delay. Are you still having this problem? > > >>>> import MySQLdb > >>>> import pandas as pd > > /lib/libgcc_s.so.1: version GCC_4.6.0 required by > > /usr/local/lib/gcc47/libgfortran.so.3 not found > [...] > > Traceback (most recent call last): > [...] > > File "/usr/local/lib/python2.7/site-packages/numpy/linalg/linalg.py", > > line 29, in > > from numpy.linalg import lapack_lite, _umath_linalg > > ImportError: /lib/libgcc_s.so.1: version GCC_4.6.0 required by > > /usr/local/lib/gcc47/libgfortran.so.3 not found > > It looks like this thread [0], these commits [1] [2], and this PR [3] > are related. > > [0] > > https://lists.freebsd.org/pipermail/freebsd-toolchain/2014-April/001149.html > > [1] https://svnweb.freebsd.org/ports?view=revision&revision=351167 > > [2] https://svnweb.freebsd.org/ports?view=revision&revision=351159 > > [3] https://www.freebsd.org/cgi/query-pr.cgi?pr=185902 > > Regards, > John > >